MD03G1030400.v1.1

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0009344
Physical Location & Seq
Reverse (-)
2456093 .. 2459092
3000 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1030400.v1.1.491

Sequence Viewer

Length: 1056 bp
ATGGGTTCGAAGTCGAATGCCGGCCATCCTCACACAGGCGATGGCGCCAGCCCTGGAAAGATCTTCATCGGTGGATTGGCAAAAGACACTACAAATGCTACATTTACCAAGCACTTTGGGAAATATGGAGAGATAGTGGACTCAGTGATAATGAAAGACCGCTTCACGGGTACCCCACGGGGATTTGGGTTTATTACCTATGCTGATCCATCAGTTGTTGACACAGTTATTGAGGAAACTCATGTTATTAATGGAAAGCAGGTTGAGATCAAGCGAACCATTCCGAAAGGTCAAGGGCAATCAAAGGATTTTAAGACAAAGAAGATATTTGTTGGTGGCATTCCATCATCTGTCTCTGAGGATGAGTTGAAAAGTTTCTTCTCTGAGTATGGGAAAGTGGTGGAACACCAGATCATACGAGATCATGAGACCAATCGTTCTAGAGGCTTTGGGTTTGTTATTTTTGACAGTGAGGAAGTTGTAGATGAGTTGTTATCTAAAGGAAACATGATTGATATGGAGGGTACCCAGGTGGAGATCAAGAAAGCTGAACCAAAGAAAGCCTCAAATCCACCATCTGCTCCTGCATATGGTAGCAATTCTAGGGCTCGTTCTTTCAATGATGGCTTTGGTGGATATGGCAGTTCTTATGGTAGTTTTGATGGAGGGTTTGGCCCTGGACCCTATAGGACACCAGGTGGTCTTGGTGGTAGATATGGTGGTGGTTATGGCTACGGTTATGGTAGCGATAGTGGCGAATTTGGCAGTGGTTATGGGAATTTTGGCAGCAGTAGCTTAGGTGGCTATCGAGGTGAGACTTCCCTTGGTTATTCTAGCCGCTTTGGACCATATGGTGGTGGTTATGGTGGGGGCTATAATGCGAGTGGTTTAGGTGGTTATGGCCGAGGCAGTGAAGGCTATGGAAGTTACGGAGGTTCAAACTATGGTGGTGGCTATGACTCTGGTCCTGGGGCTACTTATGGTGGAGGAGCAGGTGGACCATATGGAAGGGGGGGATATAGTAGCAGTAGTCGGTACCACCCCTATGGAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0001667 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006403 GO:0006417 GO:0006928 GO:0006935 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007298 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007319 GO:0007350 GO:0007351 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008298 GO:0008358 GO:0008595 GO:0009605 GO:0009653 GO:0009790 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010631 GO:0016043 GO:0016477 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0030030 GO:0030154 GO:0030182 GO:0030707 GO:0030855 GO:0031175 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0034248 GO:0034249 GO:0034250 GO:0035282 GO:0035770 GO:0036464 GO:0040011 GO:0042221 GO:0042330 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045451 GO:0045495 GO:0045727 GO:0046011 GO:0048024 GO:0048027 GO:0048468 GO:0048469 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048599 GO:0048609 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051641 GO:0051674 GO:0051704 GO:0060255 GO:0060293 GO:0060429 GO:0060810 GO:0060811 GO:0061564 GO:0065007 GO:0070013 GO:0070727 GO:0071840 GO:0080090 GO:0090130 GO:0090132 GO:0097159 GO:0097485 GO:0120036 GO:0120039 GO:1901363 GO:1903311 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

352

Amino Acids

36.58

Weight (kDa)

8.37

Isoelectric Point (pI)

23.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 21 - 80 2.3e-13 RNA recognition motif
RRM_7 PF16367 107 - 170 1.1e-09 RNA recognition motif
RRM_1 PF00076 109 - 177 2.5e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 983
Acc36I ACCTGC 2 cut(s) 250, 983
Acc65I GGTACC 3 cut(s) 170, 524, 1035
AccB1I GGYRCC 4 cut(s) 44, 170, 524, 1035
AccB7I CCANNNNNTGG 1 cut(s) 854
AciI CCGC 2 cut(s) 160, 838
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 2 cut(s) 22, 901
AcsI RAATTY 2 cut(s) 758, 778
AcyI GRCGYC 1 cut(s) 45
AdeI CACNNNGTG 1 cut(s) 698
AfaI GTAC 3 cut(s) 172, 526, 1037
AfiI CCNNNNNNNGG 5 cut(s) 35, 166, 590, 854, 1050
AgsI TTSAA 3 cut(s) 370, 619, 939
AjnI CCWGG 5 cut(s) 52, 528, 676, 694, 967
AluBI AGCT 2 cut(s) 548, 795
AluI AGCT 2 cut(s) 548, 795
Alw26I GTCTC 3 cut(s) 358, 422, 809
AlwI GGATC 1 cut(s) 200
AoxI GGCC 3 cut(s) 22, 673, 901
ApeKI GCWGC 1 cut(s) 786
ApoI RAATTY 2 cut(s) 758, 778
AseI ATTAAT 1 cut(s) 249
Asp700I GAANNNNTTC 1 cut(s) 374
Asp718I GGTACC 3 cut(s) 170, 524, 1035
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 5 cut(s) 674, 680, 845, 965, 998
AsuHPI GGTGA 1 cut(s) 824
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 4 cut(s) 680, 845, 965, 998
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
BanI GGYRCC 4 cut(s) 44, 170, 524, 1035
BanII GRGCYC 1 cut(s) 610
BbvI GCAGC 1 cut(s) 798
BccI CCATC 7 cut(s) 33, 35, 217, 352, 583, 617, 656
BciT130I CCWGG 5 cut(s) 54, 530, 678, 696, 969
BcoDI GTCTC 3 cut(s) 358, 422, 809
BfaI CTAG 3 cut(s) 441, 603, 834
BfmI CTRYAG 1 cut(s) 685
BfoI RGCGCY 1 cut(s) 48
BfuAI ACCTGC 2 cut(s) 250, 983
BglII AGATCT 1 cut(s) 60
BisI GCNGC 2 cut(s) 787, 838
BlsI GCNGC 2 cut(s) 788, 839
Bme1390I CCNGG 5 cut(s) 54, 530, 678, 696, 969
Bme18I GGWCC 4 cut(s) 680, 845, 965, 998
BmgT120I GGNCC 5 cut(s) 674, 680, 845, 965, 998
BmiI GGNNCC 5 cut(s) 46, 172, 526, 682, 1037
BmrFI CCNGG 5 cut(s) 54, 530, 678, 696, 969
BoxI GACNNNNGTC 1 cut(s) 963
Bpu10I CCTNAGC 1 cut(s) 796
Bpu14I TTCGAA 1 cut(s) 8
BsaBI GATNNNNATC 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 45
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 7 cut(s) 52, 176, 528, 676, 823, 904, 968
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 5 cut(s) 35, 166, 590, 854, 1050
Bse118I RCCGGY 1 cut(s) 20
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 5 cut(s) 54, 530, 678, 696, 969
BseDI CCNNGG 7 cut(s) 52, 176, 528, 676, 823, 904, 968
BseGI GGATG 2 cut(s) 25, 367
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 5 cut(s) 35, 166, 590, 854, 1050
BseMII CTCAG 3 cut(s) 156, 348, 375
BseRI GAGGAG 1 cut(s) 1002
BseXI GCAGC 1 cut(s) 798
BshFI GGCC 3 cut(s) 24, 675, 903
BshNI GGYRCC 4 cut(s) 44, 170, 524, 1035
BsiSI CCGG 1 cut(s) 21
BslI CCNNNNNNNGG 5 cut(s) 35, 166, 590, 854, 1050
BsmAI GTCTC 3 cut(s) 358, 422, 809
BsmI GAATGC 2 cut(s) 22, 339
BsnI GGCC 3 cut(s) 24, 675, 903
Bso31I GGTCTC 1 cut(s) 422
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 610
Bsp143I GATC 6 cut(s) 60, 205, 267, 411, 421, 537
BspACI CCGC 2 cut(s) 160, 838
BspANI GGCC 3 cut(s) 24, 675, 903
BspCNI CTCAG 3 cut(s) 155, 349, 376
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 5 cut(s) 46, 172, 526, 682, 1037
BspMI ACCTGC 2 cut(s) 250, 983
BspPI GGATC 1 cut(s) 200
BspT104I TTCGAA 1 cut(s) 8
BspT107I GGYRCC 4 cut(s) 44, 170, 524, 1035
BspTNI GGTCTC 1 cut(s) 422
BsrFI RCCGGY 1 cut(s) 20
BssAI RCCGGY 1 cut(s) 20
BssECI CCNNGG 7 cut(s) 52, 176, 528, 676, 823, 904, 968
BssMI GATC 6 cut(s) 60, 205, 267, 411, 421, 537
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 823
Bst2UI CCWGG 5 cut(s) 54, 530, 678, 696, 969
Bst4CI ACNGT 3 cut(s) 226, 470, 737
BstACI GRCGYC 1 cut(s) 45
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 22, 49
BstDEI CTNAG 4 cut(s) 142, 357, 384, 796
BstDSI CCRYGG 1 cut(s) 176
BstENI CCTNNNNNAGG 2 cut(s) 33, 1048
BstF5I GGATG 2 cut(s) 25, 367
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 6 cut(s) 63, 208, 270, 414, 424, 540
BstMAI GTCTC 3 cut(s) 358, 422, 809
BstMBI GATC 6 cut(s) 60, 205, 267, 411, 421, 537
BstMWI GCNNNNNNNGC 5 cut(s) 753, 762, 792, 801, 915
BstNI CCWGG 5 cut(s) 54, 530, 678, 696, 969
BstPAI GACNNNNGTC 1 cut(s) 963
BstSCI CCNGG 5 cut(s) 52, 528, 676, 694, 967
BstSFI CTRYAG 1 cut(s) 685
BstV1I GCAGC 1 cut(s) 798
BstX2I RGATCY 1 cut(s) 60
BstXI CCANNNNNNTGG 1 cut(s) 1046
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 3 cut(s) 24, 675, 903
BtgI CCRYGG 1 cut(s) 176
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 2 cut(s) 25, 367
BtsI GCAGTG 2 cut(s) 772, 916
BtsIMutI CAGTG 4 cut(s) 150, 475, 772, 916
BveI ACCTGC 2 cut(s) 250, 983
Cac8I GCNNGC 2 cut(s) 22, 49
CciI TCATGA 1 cut(s) 424
CfoI GCGC 1 cut(s) 47
Cfr10I RCCGGY 1 cut(s) 20
Cfr13I GGNCC 5 cut(s) 674, 680, 845, 965, 998
CsiI ACCWGGT 1 cut(s) 694
Csp6I GTAC 3 cut(s) 171, 525, 1036
CviAII CATG 3 cut(s) 242, 425, 508
CviQI GTAC 3 cut(s) 171, 525, 1036
DdeI CTNAG 4 cut(s) 142, 357, 384, 796
DinI GGCGCC 1 cut(s) 46
DpnI GATC 6 cut(s) 62, 207, 269, 413, 423, 539
DpnII GATC 6 cut(s) 60, 205, 267, 411, 421, 537
DraIII CACNNNGTG 1 cut(s) 698
EaeI YGGCCR 2 cut(s) 22, 901
Eco130I CCWWGG 1 cut(s) 823
Eco24I GRGCYC 1 cut(s) 610
Eco31I GGTCTC 1 cut(s) 422
Eco47I GGWCC 4 cut(s) 680, 845, 965, 998
EcoNI CCTNNNNNAGG 2 cut(s) 33, 1048
EcoRII CCWGG 5 cut(s) 52, 528, 676, 694, 967
EcoT14I CCWWGG 1 cut(s) 823
EcoT38I GRGCYC 1 cut(s) 610
EgeI GGCGCC 1 cut(s) 46
EheI GGCGCC 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 823
FaeI CATG 3 cut(s) 245, 428, 511
FatI CATG 3 cut(s) 241, 424, 507
FauNDI CATATG 3 cut(s) 589, 850, 1003
Fnu4HI GCNGC 2 cut(s) 787, 838
FokI GGATG 2 cut(s) 12, 374
FriOI GRGCYC 1 cut(s) 610
Fsp4HI GCNGC 2 cut(s) 787, 838
FspBI CTAG 3 cut(s) 441, 603, 834
GlaI GCGC 1 cut(s) 46
GluI GCNGC 2 cut(s) 787, 838
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 3 cut(s) 24, 675, 903
HapII CCGG 1 cut(s) 21
HhaI GCGC 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 3 cut(s) 245, 428, 511
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 2 cut(s) 140, 959
HpaII CCGG 1 cut(s) 21
HphI GGTGA 1 cut(s) 824
Hpy166II GTNNAC 3 cut(s) 139, 220, 998
Hpy188I TCNGA 3 cut(s) 285, 358, 385
Hpy188III TCNNGA 3 cut(s) 425, 441, 541
Hpy8I GTNNAC 3 cut(s) 139, 220, 998
HpyAV CCTTC 3 cut(s) 908, 1002, 1044
HpyCH4III ACNGT 3 cut(s) 226, 470, 737
HpyCH4V TGCA 1 cut(s) 587
HpyF10VI GCNNNNNNNGC 5 cut(s) 753, 762, 792, 801, 915
HpyF3I CTNAG 4 cut(s) 142, 357, 384, 796
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 3 cut(s) 245, 428, 511
HspAI GCGC 1 cut(s) 45
KasI GGCGCC 1 cut(s) 44
KpnI GGTACC 3 cut(s) 174, 528, 1039
KroI GCCGGC 1 cut(s) 20
KroNI GCCGGC 1 cut(s) 22
Kzo9I GATC 6 cut(s) 60, 205, 267, 411, 421, 537
LmnI GCTCC 2 cut(s) 586, 989
Lsp1109I GCAGC 1 cut(s) 798
MabI ACCWGGT 1 cut(s) 694
MaeI CTAG 3 cut(s) 441, 603, 834
MaeIII GTNAC 1 cut(s) 926
MalI GATC 6 cut(s) 62, 207, 269, 413, 423, 539
MboI GATC 6 cut(s) 60, 205, 267, 411, 421, 537
MboII GAAGA 3 cut(s) 55, 334, 370
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 610
MluCI AATT 3 cut(s) 598, 758, 778
Mly113I GGCGCC 1 cut(s) 45
MlyI GAGTC 2 cut(s) 134, 953
MroNI GCCGGC 1 cut(s) 20
MroXI GAANNNNTTC 1 cut(s) 374
MseI TTAA 2 cut(s) 249, 312
MslI CAYNNNNRTG 1 cut(s) 1044
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 5 cut(s) 54, 530, 678, 696, 969
Mva1269I GAATGC 2 cut(s) 22, 339
MvaI CCWGG 5 cut(s) 54, 530, 678, 696, 969
MwoI GCNNNNNNNGC 5 cut(s) 753, 762, 792, 801, 915
NaeI GCCGGC 1 cut(s) 22
NarI GGCGCC 1 cut(s) 45
NdeI CATATG 3 cut(s) 589, 850, 1003
NdeII GATC 6 cut(s) 60, 205, 267, 411, 421, 537
NgoMIV GCCGGC 1 cut(s) 20
NlaIII CATG 3 cut(s) 245, 428, 511
NlaIV GGNNCC 5 cut(s) 46, 172, 526, 682, 1037
NmeAIII GCCGAG 1 cut(s) 929
NspV TTCGAA 1 cut(s) 8
PagI TCATGA 1 cut(s) 424
PaqCI CACCTGC 1 cut(s) 983
PctI GAATGC 2 cut(s) 22, 339
PdiI GCCGGC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 854
PkrI GCNGC 2 cut(s) 788, 839
PleI GAGTC 2 cut(s) 134, 953
PluTI GGCGCC 1 cut(s) 48
PpsI GAGTC 2 cut(s) 134, 953
PshAI GACNNNNGTC 1 cut(s) 963
PshBI ATTAAT 1 cut(s) 249
Psp6I CCWGG 5 cut(s) 52, 528, 676, 694, 967
PspGI CCWGG 5 cut(s) 52, 528, 676, 694, 967
PspN4I GGNNCC 5 cut(s) 46, 172, 526, 682, 1037
PspPI GGNCC 5 cut(s) 674, 680, 845, 965, 998
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 3 cut(s) 172, 526, 1037
RsaNI GTAC 3 cut(s) 171, 525, 1036
RseI CAYNNNNRTG 1 cut(s) 1044
SaqAI TTAA 2 cut(s) 249, 312
SatI GCNGC 2 cut(s) 787, 838
Sau3AI GATC 6 cut(s) 60, 205, 267, 411, 421, 537
Sau96I GGNCC 5 cut(s) 674, 680, 845, 965, 998
SchI GAGTC 2 cut(s) 134, 953
ScrFI CCNGG 5 cut(s) 54, 530, 678, 696, 969
SduI GDGCHC 1 cut(s) 610
SexAI ACCWGGT 1 cut(s) 694
SfcI CTRYAG 1 cut(s) 685
SfoI GGCGCC 1 cut(s) 46
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 4 cut(s) 680, 845, 965, 998
SmiMI CAYNNNNRTG 1 cut(s) 1044
Sse9I AATT 3 cut(s) 598, 758, 778
SsiI CCGC 2 cut(s) 160, 838
SspDI GGCGCC 1 cut(s) 44
SspMI CTAG 3 cut(s) 441, 603, 834
StyD4I CCNGG 5 cut(s) 52, 528, 676, 694, 967
StyI CCWWGG 1 cut(s) 823
TaaI ACNGT 3 cut(s) 226, 470, 737
TaqI TCGA 3 cut(s) 8, 14, 808
TasI AATT 3 cut(s) 598, 758, 778
TauI GCSGC 1 cut(s) 840
Tru1I TTAA 2 cut(s) 249, 312
Tru9I TTAA 2 cut(s) 249, 312
TscAI CASTG 4 cut(s) 150, 475, 772, 916
TseI GCWGC 1 cut(s) 786
TspDTI ATGAA 2 cut(s) 55, 167
TspGWI ACGGA 1 cut(s) 945
TspRI CASTG 4 cut(s) 150, 475, 772, 916
Van91I CCANNNNNTGG 1 cut(s) 854
VpaK11BI GGWCC 4 cut(s) 680, 845, 965, 998
VspI ATTAAT 1 cut(s) 249
XagI CCTNNNNNAGG 2 cut(s) 33, 1048
XapI RAATTY 2 cut(s) 758, 778
XbaI TCTAGA 1 cut(s) 440
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 3 cut(s) 441, 603, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.