RLG00000036608

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0009344
Physical Location & Seq
Forward (+)
82448346 .. 82450287
1942 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036608

Sequence Viewer

Length: 1065 bp
ATGGGTTCAAAATCGCACAGCGGTCATCCCCACTCCGGCGATGGCGCTAGCCCTGGAAAGATCTTCATTGGTGGATTGGCAAAAGACACCACATATGCTACATTTACTAAGCATTTTGGGAAATATGGAGAAATAGTGGACTCTGTGATAATGAAAGATCGGTTCACCGGTACTCCAAGGGGCTTTGGGTTTATCACCTATGCTGATCCTTCCGTTGTTGACAAAGTTATTGAGGACACTCATGTGATCAATGGAAAGCAGGTTGAGATCAAGAGGACCATTCCTAAAGGCCAAGGGCAATCAAAGGACTTTAGGACAAAGAAGATATTTGTTGGTGGAATTCCATCTGCAGTTCCCGAGGAAGAGTTGAAAAATTTCTTCTCAAAGTATGGAGAGGTTGTGGAACACCAGATCATACGGGATCATGAAACCAACCGTTCTCGAGGCTTTGGATTTGTAATTTTTGACAGTGAGGAAGTTGTAGATGAATTGTTATCTAAAGGAAACATGATAGATATGGAGGGTACCCAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAATCCCCCACCTGCTTCTGCATATGGTAGCAATTCTAGGGCTCGTTCTTTCAATGATGGCTATGGTCCATATGGCAGTTCTTATGGTGGTTTTGATGGAGGATTTGGCCCTGGCCCCTATAGGACACCAGGTGGTCTTGGTGGCGGTAGATACGGTGGTGGTTATGGATATGGTTATGGTAGCGATAGTGGTGAATTTGGCACTGGGTATGGAAGTTTTGGCAGCAGTAGCTTAGGTGGCTATAGGGGTGAATCTTCCCTTGGTTACACTAGTCGCTTGGGCCCCTATGGTGGTGGTTTTGGTGGTGGTTATGGTGCAAGTGGTTTAGGTGGCTATGGTCGAGGTGGTGGTGAAGGCTATGGAAGTGGAAGTTATGGAAGTTCAAATTATGGTGGTGGATATGAATCTGGCACTGGTGGTACTTATGGTGGAGCAGGTGGAGCGTATGGAAGGGGGGGCTATAGTAGCAGTAGTCGGTACCATCCATATTCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0001667 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006403 GO:0006417 GO:0006928 GO:0006935 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007298 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007319 GO:0007350 GO:0007351 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008298 GO:0008358 GO:0008595 GO:0009605 GO:0009653 GO:0009790 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010631 GO:0016043 GO:0016477 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0030030 GO:0030154 GO:0030182 GO:0030707 GO:0030855 GO:0031175 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0034248 GO:0034249 GO:0034250 GO:0035282 GO:0035770 GO:0036464 GO:0040011 GO:0042221 GO:0042330 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045451 GO:0045495 GO:0045727 GO:0046011 GO:0048024 GO:0048027 GO:0048468 GO:0048469 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048599 GO:0048609 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051641 GO:0051674 GO:0051704 GO:0060255 GO:0060293 GO:0060429 GO:0060810 GO:0060811 GO:0061564 GO:0065007 GO:0070013 GO:0070727 GO:0071840 GO:0080090 GO:0090130 GO:0090132 GO:0097159 GO:0097485 GO:0120036 GO:0120039 GO:1901363 GO:1903311 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

355

Amino Acids

36.86

Weight (kDa)

8.65

Isoelectric Point (pI)

24.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 21 - 88 3.9e-14 RNA recognition motif
RRM_7 PF16367 107 - 170 2.8e-09 RNA recognition motif
RRM_1 PF00076 109 - 177 1.4e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 586, 992
Acc36I ACCTGC 3 cut(s) 250, 586, 992
Acc65I GGTACC 2 cut(s) 524, 1044
AccB1I GGYRCC 2 cut(s) 524, 1044
AciI CCGC 2 cut(s) 21, 711
AclWI GGATC 2 cut(s) 200, 429
AcsI RAATTY 3 cut(s) 339, 373, 761
AdeI CACNNNGTG 1 cut(s) 698
AfaI GTAC 4 cut(s) 172, 526, 988, 1046
AfiI CCNNNNNNNGG 2 cut(s) 35, 857
AgeI ACCGGT 1 cut(s) 167
AgsI TTSAA 5 cut(s) 9, 370, 619, 951, 1059
AhlI ACTAGT 1 cut(s) 836
AjnI CCWGG 4 cut(s) 52, 528, 676, 694
AjuI GAANNNNNNNTTGG 2 cut(s) 810, 842
AleI CACNNNNGTG 1 cut(s) 242
AluBI AGCT 2 cut(s) 548, 798
AluI AGCT 2 cut(s) 548, 798
AlwI GGATC 2 cut(s) 200, 429
Ama87I CYCGRG 2 cut(s) 356, 441
AoxI GGCC 4 cut(s) 289, 673, 679, 847
ApaI GGGCCC 1 cut(s) 851
ApeKI GCWGC 1 cut(s) 789
ApoI RAATTY 3 cut(s) 339, 373, 761
AsiGI ACCGGT 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 374
Asp718I GGTACC 2 cut(s) 524, 1044
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 6 cut(s) 276, 632, 674, 680, 847, 848
AsuHPI GGTGA 5 cut(s) 157, 187, 770, 827, 929
AsuNHI GCTAGC 1 cut(s) 47
AvaI CYCGRG 2 cut(s) 356, 441
AvaII GGWCC 2 cut(s) 276, 632
BaeGI GKGCMC 1 cut(s) 851
BaeI ACNNNNGTAYC 4 cut(s) 516, 549, 709, 742
BanI GGYRCC 2 cut(s) 524, 1044
BanII GRGCYC 2 cut(s) 610, 851
BbvI GCAGC 1 cut(s) 801
BccI CCATC 5 cut(s) 35, 352, 617, 656, 1056
BciT130I CCWGG 4 cut(s) 54, 530, 678, 696
BclI TGATCA 1 cut(s) 246
BcuI ACTAGT 1 cut(s) 836
BfaI CTAG 3 cut(s) 48, 603, 837
BfmI CTRYAG 4 cut(s) 348, 685, 808, 1027
BfoI RGCGCY 1 cut(s) 48
BfuAI ACCTGC 3 cut(s) 250, 586, 992
BglII AGATCT 1 cut(s) 60
BisI GCNGC 1 cut(s) 790
BlsI GCNGC 1 cut(s) 791
Bme1390I CCNGG 4 cut(s) 54, 530, 678, 696
Bme18I GGWCC 2 cut(s) 276, 632
BmeT110I CYCGRG 2 cut(s) 356, 441
BmgT120I GGNCC 6 cut(s) 276, 632, 674, 680, 847, 848
BmiI GGNNCC 5 cut(s) 526, 682, 849, 850, 1046
BmrFI CCNGG 4 cut(s) 54, 530, 678, 696
BmrI ACTGGG 1 cut(s) 780
BmtI GCTAGC 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 780
Bpu10I CCTNAGC 1 cut(s) 799
BsaBI GATNNNNATC 1 cut(s) 970
BsaJI CCNNGG 7 cut(s) 52, 176, 292, 357, 528, 676, 826
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 6 cut(s) 120, 150, 157, 187, 384, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 857
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 2 cut(s) 775, 985
Bse8I GATNNNNATC 1 cut(s) 970
BseBI CCWGG 4 cut(s) 54, 530, 678, 696
BseDI CCNNGG 7 cut(s) 52, 176, 292, 357, 528, 676, 826
BseGI GGATG 2 cut(s) 25, 1048
BseJI GATNNNNATC 1 cut(s) 970
BseLI CCNNNNNNNGG 2 cut(s) 35, 857
BseNI ACTGG 2 cut(s) 775, 985
BseSI GKGCMC 1 cut(s) 851
BseXI GCAGC 1 cut(s) 801
BshFI GGCC 4 cut(s) 291, 675, 681, 849
BshNI GGYRCC 2 cut(s) 524, 1044
BshTI ACCGGT 1 cut(s) 167
BsiHKCI CYCGRG 2 cut(s) 356, 441
BsiSI CCGG 2 cut(s) 36, 168
BslI CCNNNNNNNGG 2 cut(s) 35, 857
BsnI GGCC 4 cut(s) 291, 675, 681, 849
BsoBI CYCGRG 2 cut(s) 356, 441
Bsp120I GGGCCC 1 cut(s) 847
Bsp1286I GDGCHC 2 cut(s) 610, 851
Bsp143I GATC 8 cut(s) 60, 157, 205, 246, 267, 411, 421, 537
BspACI CCGC 2 cut(s) 21, 711
BspANI GGCC 4 cut(s) 291, 675, 681, 849
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 5 cut(s) 526, 682, 849, 850, 1046
BspMAI CTGCAG 1 cut(s) 352
BspMI ACCTGC 3 cut(s) 250, 586, 992
BspOI GCTAGC 1 cut(s) 51
BspPI GGATC 2 cut(s) 200, 429
BspT107I GGYRCC 2 cut(s) 524, 1044
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 2 cut(s) 775, 985
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 7 cut(s) 52, 176, 292, 357, 528, 676, 826
BssMI GATC 8 cut(s) 60, 157, 205, 246, 267, 411, 421, 537
BssT1I CCWWGG 3 cut(s) 176, 292, 826
Bst2UI CCWGG 4 cut(s) 54, 530, 678, 696
Bst4CI ACNGT 3 cut(s) 437, 470, 722
Bst6I CTCTTC 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 108, 799
BstF5I GGATG 2 cut(s) 25, 1048
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 8 cut(s) 63, 160, 208, 249, 270, 414, 424, 540
BstMBI GATC 8 cut(s) 60, 157, 205, 246, 267, 411, 421, 537
BstMWI GCNNNNNNNGC 4 cut(s) 795, 804, 1007, 1032
BstNI CCWGG 4 cut(s) 54, 530, 678, 696
BstSCI CCNGG 4 cut(s) 52, 528, 676, 694
BstSFI CTRYAG 4 cut(s) 348, 685, 808, 1027
BstSLI GKGCMC 1 cut(s) 851
BstV1I GCAGC 1 cut(s) 801
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 4 cut(s) 291, 675, 681, 849
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 2 cut(s) 25, 1048
BtsIMutI CAGTG 3 cut(s) 475, 768, 978
BveI ACCTGC 3 cut(s) 250, 586, 992
Cac8I GCNNGC 1 cut(s) 49
CciI TCATGA 1 cut(s) 424
CfoI GCGC 1 cut(s) 47
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 6 cut(s) 276, 632, 674, 680, 847, 848
CsiI ACCWGGT 1 cut(s) 694
Csp6I GTAC 4 cut(s) 171, 525, 987, 1045
CspAI ACCGGT 1 cut(s) 167
CviAII CATG 3 cut(s) 242, 425, 508
CviQI GTAC 4 cut(s) 171, 525, 987, 1045
DdeI CTNAG 2 cut(s) 108, 799
DpnI GATC 8 cut(s) 62, 159, 207, 248, 269, 413, 423, 539
DpnII GATC 8 cut(s) 60, 157, 205, 246, 267, 411, 421, 537
DraIII CACNNNGTG 1 cut(s) 698
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 3 cut(s) 176, 292, 826
Eco24I GRGCYC 2 cut(s) 610, 851
Eco47I GGWCC 2 cut(s) 276, 632
Eco88I CYCGRG 2 cut(s) 356, 441
EcoO109I RGGNCCY 1 cut(s) 848
EcoRI GAATTC 1 cut(s) 339
EcoRII CCWGG 4 cut(s) 52, 528, 676, 694
EcoT14I CCWWGG 3 cut(s) 176, 292, 826
EcoT38I GRGCYC 2 cut(s) 610, 851
ErhI CCWWGG 3 cut(s) 176, 292, 826
FaeI CATG 3 cut(s) 245, 428, 511
FatI CATG 3 cut(s) 241, 424, 507
FauNDI CATATG 3 cut(s) 94, 589, 637
FbaI TGATCA 1 cut(s) 246
Fnu4HI GCNGC 1 cut(s) 790
FokI GGATG 2 cut(s) 12, 1035
FriOI GRGCYC 2 cut(s) 610, 851
Fsp4HI GCNGC 1 cut(s) 790
FspBI CTAG 3 cut(s) 48, 603, 837
GlaI GCGC 1 cut(s) 46
GluI GCNGC 1 cut(s) 790
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 4 cut(s) 291, 675, 681, 849
HapII CCGG 2 cut(s) 36, 168
HhaI GCGC 1 cut(s) 47
Hin1II CATG 3 cut(s) 245, 428, 511
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 3 cut(s) 140, 818, 971
HpaII CCGG 2 cut(s) 36, 168
HphI GGTGA 5 cut(s) 157, 187, 770, 827, 929
Hpy166II GTNNAC 3 cut(s) 139, 165, 220
Hpy188III TCNNGA 6 cut(s) 271, 356, 425, 441, 541, 1059
Hpy8I GTNNAC 3 cut(s) 139, 165, 220
HpyAV CCTTC 3 cut(s) 219, 914, 1011
HpyCH4III ACNGT 3 cut(s) 437, 470, 722
HpyCH4V TGCA 3 cut(s) 350, 587, 884
HpyF10VI GCNNNNNNNGC 4 cut(s) 795, 804, 1007, 1032
HpyF3I CTNAG 2 cut(s) 108, 799
Hsp92II CATG 3 cut(s) 245, 428, 511
HspAI GCGC 1 cut(s) 45
KpnI GGTACC 2 cut(s) 528, 1048
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 8 cut(s) 60, 157, 205, 246, 267, 411, 421, 537
LmnI GCTCC 2 cut(s) 998, 1007
Lsp1109I GCAGC 1 cut(s) 801
MabI ACCWGGT 1 cut(s) 694
MaeI CTAG 3 cut(s) 48, 603, 837
MaeIII GTNAC 1 cut(s) 830
MalI GATC 8 cut(s) 62, 159, 207, 248, 269, 413, 423, 539
MboI GATC 8 cut(s) 60, 157, 205, 246, 267, 411, 421, 537
MboII GAAGA 5 cut(s) 55, 334, 370, 374, 813
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 2 cut(s) 610, 851
MluCI AATT 7 cut(s) 339, 373, 459, 488, 598, 761, 952
MlyI GAGTC 1 cut(s) 134
MroXI GAANNNNTTC 1 cut(s) 374
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 21
MspI CCGG 2 cut(s) 36, 168
MspR9I CCNGG 4 cut(s) 54, 530, 678, 696
MvaI CCWGG 4 cut(s) 54, 530, 678, 696
MwoI GCNNNNNNNGC 4 cut(s) 795, 804, 1007, 1032
NdeI CATATG 3 cut(s) 94, 589, 637
NdeII GATC 8 cut(s) 60, 157, 205, 246, 267, 411, 421, 537
NheI GCTAGC 1 cut(s) 47
NlaIII CATG 3 cut(s) 245, 428, 511
NlaIV GGNNCC 5 cut(s) 526, 682, 849, 850, 1046
OliI CACNNNNGTG 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 441
PagI TCATGA 1 cut(s) 424
PaqCI CACCTGC 2 cut(s) 586, 992
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 2 cut(s) 818, 971
PinAI ACCGGT 1 cut(s) 167
PkrI GCNGC 1 cut(s) 791
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp6I CCWGG 4 cut(s) 52, 528, 676, 694
PspGI CCWGG 4 cut(s) 52, 528, 676, 694
PspN4I GGNNCC 5 cut(s) 526, 682, 849, 850, 1046
PspOMI GGGCCC 1 cut(s) 847
PspPI GGNCC 6 cut(s) 276, 632, 674, 680, 847, 848
PstI CTGCAG 1 cut(s) 352
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 4 cut(s) 172, 526, 988, 1046
RsaNI GTAC 4 cut(s) 171, 525, 987, 1045
RseI CAYNNNNRTG 1 cut(s) 242
SatI GCNGC 1 cut(s) 790
Sau3AI GATC 8 cut(s) 60, 157, 205, 246, 267, 411, 421, 537
Sau96I GGNCC 6 cut(s) 276, 632, 674, 680, 847, 848
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 4 cut(s) 54, 530, 678, 696
SduI GDGCHC 2 cut(s) 610, 851
SexAI ACCWGGT 1 cut(s) 694
SfcI CTRYAG 4 cut(s) 348, 685, 808, 1027
Sfr274I CTCGAG 1 cut(s) 441
SinI GGWCC 2 cut(s) 276, 632
SlaI CTCGAG 1 cut(s) 441
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
SpeI ACTAGT 1 cut(s) 836
Sse9I AATT 7 cut(s) 339, 373, 459, 488, 598, 761, 952
SsiI CCGC 2 cut(s) 21, 711
SspMI CTAG 3 cut(s) 48, 603, 837
StyD4I CCNGG 4 cut(s) 52, 528, 676, 694
StyI CCWWGG 3 cut(s) 176, 292, 826
TaaI ACNGT 3 cut(s) 437, 470, 722
TaqI TCGA 2 cut(s) 442, 907
TasI AATT 7 cut(s) 339, 373, 459, 488, 598, 761, 952
TfiI GAWTC 2 cut(s) 818, 971
TscAI CASTG 3 cut(s) 475, 775, 985
TseI GCWGC 1 cut(s) 789
TspDTI ATGAA 5 cut(s) 55, 167, 441, 501, 984
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 3 cut(s) 475, 775, 985
VpaK11BI GGWCC 2 cut(s) 276, 632
XapI RAATTY 3 cut(s) 339, 373, 761
XcmI CCANNNNNNNNNTGG 1 cut(s) 38
XhoI CTCGAG 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 3 cut(s) 48, 603, 837
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.