Rh5AG501500

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0009344
Physical Location & Seq
Forward (+)
84903527 .. 84906565
3039 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG501500.1

Sequence Viewer

Length: 768 bp
ATGGGTTCGAAATCGCACAGCGGTCATCCTCACTCCGGCGACGGCGCTAGCCCTGGAAAGATCTTCATTGGTGGATTGGCAAAAGACACCACATATGCTACATTTACAAAGCATTTTGGGAAATATGGAGAAATAGTGGACTCTGTGATAATGAAAGATCGGTTCACCGGAACTCCAAGGGGCTTTGGGTTTATTACCTATGCTGATCCTTCCGTTGTTGACAAAGTTATCGAGGACACTCATGTGATCAATGGAAAGCAGGTTGAGATCAAGAGGACCATTCCTAAAGGCCAAGGGCAATCAAAGGACTTTAGGACAAAGAAGATATTTGTTGGTGGAATTCCATCTGCAGTTCCCGAGGAAGAGTTGAAAAATTTCTTCTCAAAGTATGGAGAGGTTGTGGAACACCAGATCATACGGGATCATGAAACCAACCGTTCTCGAGGCTTTGGATTTGTAATTTTTGACAGTGAGGAAGTTGTAGATGAATTGTTATCTAAAGGAAACATGATAGATATGGAGGGTACCCAGGTGAGCTTATTTAAATGGTATCCGGGTTACCAGCATGTATACAAATTCCTGTTAGACATGGAACATGGAATCTTGCATTCCCCAGTTTTGTTACATAGATGCATTAAATGGTTGTTTTTTTCTTTATCACTTAGTTTTCACATAATTCACTTTAGTGATTTGTCACTAATTCTAGGTGGAGGTTGTTACAGGTATAGATCTTCTGAGGAAAGGGTGATCGCAGTAGCTCCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0001667 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006403 GO:0006417 GO:0006928 GO:0006935 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007298 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007319 GO:0007350 GO:0007351 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008298 GO:0008358 GO:0008595 GO:0009605 GO:0009653 GO:0009790 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010631 GO:0016043 GO:0016477 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0030030 GO:0030154 GO:0030182 GO:0030707 GO:0030855 GO:0031175 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0034248 GO:0034249 GO:0034250 GO:0035282 GO:0035770 GO:0036464 GO:0040011 GO:0042221 GO:0042330 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045451 GO:0045495 GO:0045727 GO:0046011 GO:0048024 GO:0048027 GO:0048468 GO:0048469 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048599 GO:0048609 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051641 GO:0051674 GO:0051704 GO:0060255 GO:0060293 GO:0060429 GO:0060810 GO:0060811 GO:0061564 GO:0065007 GO:0070013 GO:0070727 GO:0071840 GO:0080090 GO:0090130 GO:0090132 GO:0097159 GO:0097485 GO:0120036 GO:0120039 GO:1901363 GO:1903311 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

255

Amino Acids

28.71

Weight (kDa)

7.24

Isoelectric Point (pI)

28.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 21 - 88 2.2e-14 RNA recognition motif
RRM_7 PF16367 107 - 169 2e-09 RNA recognition motif
RRM_1 PF00076 109 - 176 8.2e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
Acc65I GGTACC 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 524
AccI GTMKAC 1 cut(s) 570
AciI CCGC 1 cut(s) 21
AclWI GGATC 2 cut(s) 200, 429
AcsI RAATTY 3 cut(s) 339, 373, 575
AfaI GTAC 1 cut(s) 526
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 1 cut(s) 370
AjnI CCWGG 2 cut(s) 52, 528
AleI CACNNNNGTG 2 cut(s) 242, 684
AluBI AGCT 2 cut(s) 537, 758
AluI AGCT 2 cut(s) 537, 758
AlwI GGATC 2 cut(s) 200, 429
Ama87I CYCGRG 2 cut(s) 356, 441
AoxI GGCC 1 cut(s) 289
ApoI RAATTY 3 cut(s) 339, 373, 575
Asp700I GAANNNNTTC 1 cut(s) 374
Asp718I GGTACC 1 cut(s) 524
AspLEI GCGC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 276
AsuC2I CCSGG 1 cut(s) 555
AsuHPI GGTGA 3 cut(s) 157, 544, 757
AsuII TTCGAA 1 cut(s) 8
AsuNHI GCTAGC 1 cut(s) 47
AvaI CYCGRG 2 cut(s) 356, 441
AvaII GGWCC 1 cut(s) 276
BaeI ACNNNNGTAYC 2 cut(s) 516, 549
BanI GGYRCC 1 cut(s) 524
BccI CCATC 1 cut(s) 352
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 2 cut(s) 54, 530
BciVI GTATCC 1 cut(s) 561
BclI TGATCA 1 cut(s) 246
BcnI CCSGG 1 cut(s) 555
BfaI CTAG 2 cut(s) 48, 704
BfmI CTRYAG 1 cut(s) 348
BfoI RGCGCY 1 cut(s) 48
BfuAI ACCTGC 1 cut(s) 250
BfuI GTATCC 1 cut(s) 561
BglII AGATCT 2 cut(s) 60, 728
Bme1390I CCNGG 3 cut(s) 54, 530, 555
Bme18I GGWCC 1 cut(s) 276
BmeT110I CYCGRG 2 cut(s) 356, 441
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 526
BmrFI CCNGG 3 cut(s) 54, 530, 555
BmrI ACTGGG 1 cut(s) 608
BmsI GCATC 1 cut(s) 620
BmtI GCTAGC 1 cut(s) 51
BmuI ACTGGG 1 cut(s) 608
Bpu14I TTCGAA 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 555
BsaJI CCNNGG 5 cut(s) 52, 176, 292, 357, 528
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 6 cut(s) 120, 150, 157, 187, 384, 414
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse1I ACTGG 1 cut(s) 614
BseBI CCWGG 2 cut(s) 54, 530
BseDI CCNNGG 5 cut(s) 52, 176, 292, 357, 528
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 35
BseMII CTCAG 1 cut(s) 726
BseNI ACTGG 1 cut(s) 614
BshFI GGCC 1 cut(s) 291
BshNI GGYRCC 1 cut(s) 524
BsiHKCI CYCGRG 2 cut(s) 356, 441
BsiSI CCGG 3 cut(s) 36, 168, 554
BslI CCNNNNNNNGG 1 cut(s) 35
BsmI GAATGC 1 cut(s) 607
BsnI GGCC 1 cut(s) 291
BsoBI CYCGRG 2 cut(s) 356, 441
Bsp119I TTCGAA 1 cut(s) 8
Bsp143I GATC 9 cut(s) 60, 157, 205, 246, 267, 411, 421, 728, 747
BspACI CCGC 1 cut(s) 21
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 1 cut(s) 727
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 526
BspMAI CTGCAG 1 cut(s) 352
BspMI ACCTGC 1 cut(s) 250
BspOI GCTAGC 1 cut(s) 51
BspPI GGATC 2 cut(s) 200, 429
BspT104I TTCGAA 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 524
BsrI ACTGG 1 cut(s) 614
BssECI CCNNGG 5 cut(s) 52, 176, 292, 357, 528
BssMI GATC 9 cut(s) 60, 157, 205, 246, 267, 411, 421, 728, 747
BssNAI GTATAC 1 cut(s) 571
BssT1I CCWWGG 2 cut(s) 176, 292
Bst1107I GTATAC 1 cut(s) 571
Bst2UI CCWGG 2 cut(s) 54, 530
Bst4CI ACNGT 2 cut(s) 437, 470
Bst6I CTCTTC 1 cut(s) 357
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 662, 735
BstEII GGTNACC 1 cut(s) 557
BstF5I GGATG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 48
BstHHI GCGC 1 cut(s) 47
BstKTI GATC 9 cut(s) 63, 160, 208, 249, 270, 414, 424, 731, 750
BstMBI GATC 9 cut(s) 60, 157, 205, 246, 267, 411, 421, 728, 747
BstNI CCWGG 2 cut(s) 54, 530
BstNSI RCATGY 1 cut(s) 569
BstPI GGTNACC 1 cut(s) 557
BstSCI CCNGG 3 cut(s) 52, 528, 553
BstSFI CTRYAG 1 cut(s) 348
BstX2I RGATCY 2 cut(s) 60, 728
BstYI RGATCY 2 cut(s) 60, 728
BstZ17I GTATAC 1 cut(s) 571
BsuI GTATCC 1 cut(s) 561
BsuRI GGCC 1 cut(s) 291
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 475
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 49
CciI TCATGA 1 cut(s) 424
CfoI GCGC 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 525
CviAII CATG 6 cut(s) 242, 425, 508, 566, 589, 596
CviJI RGCY 6 cut(s) 51, 183, 291, 447, 537, 758
CviKI_1 RGCY 6 cut(s) 51, 183, 291, 447, 537, 758
CviQI GTAC 1 cut(s) 525
DdeI CTNAG 2 cut(s) 662, 735
DpnI GATC 9 cut(s) 62, 159, 207, 248, 269, 413, 423, 730, 749
DpnII GATC 9 cut(s) 60, 157, 205, 246, 267, 411, 421, 728, 747
DraI TTTAAA 1 cut(s) 544
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 2 cut(s) 176, 292
Eco47I GGWCC 1 cut(s) 276
Eco88I CYCGRG 2 cut(s) 356, 441
Eco91I GGTNACC 1 cut(s) 557
EcoO65I GGTNACC 1 cut(s) 557
EcoRI GAATTC 1 cut(s) 339
EcoRII CCWGG 2 cut(s) 52, 528
EcoT14I CCWWGG 2 cut(s) 176, 292
EcoT22I ATGCAT 1 cut(s) 635
ErhI CCWWGG 2 cut(s) 176, 292
FaeI CATG 6 cut(s) 245, 428, 511, 569, 592, 599
FatI CATG 6 cut(s) 241, 424, 507, 565, 588, 595
FauNDI CATATG 1 cut(s) 94
FbaI TGATCA 1 cut(s) 246
FblI GTMKAC 1 cut(s) 570
FokI GGATG 1 cut(s) 12
FspBI CTAG 2 cut(s) 48, 704
GlaI GCGC 1 cut(s) 46
HaeII RGCGCY 1 cut(s) 48
HaeIII GGCC 1 cut(s) 291
HapII CCGG 3 cut(s) 36, 168, 554
HhaI GCGC 1 cut(s) 47
Hin1II CATG 6 cut(s) 245, 428, 511, 569, 592, 599
Hin6I GCGC 1 cut(s) 45
HinP1I GCGC 1 cut(s) 45
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 2 cut(s) 140, 600
HpaII CCGG 3 cut(s) 36, 168, 554
HphI GGTGA 3 cut(s) 157, 544, 757
Hpy166II GTNNAC 4 cut(s) 139, 165, 220, 571
Hpy188I TCNGA 1 cut(s) 736
Hpy188III TCNNGA 4 cut(s) 271, 356, 425, 441
Hpy8I GTNNAC 4 cut(s) 139, 165, 220, 571
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 219
HpyCH4III ACNGT 2 cut(s) 437, 470
HpyCH4V TGCA 3 cut(s) 350, 607, 633
HpyF3I CTNAG 2 cut(s) 662, 735
Hsp92II CATG 6 cut(s) 245, 428, 511, 569, 592, 599
HspAI GCGC 1 cut(s) 45
KpnI GGTACC 1 cut(s) 528
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 9 cut(s) 60, 157, 205, 246, 267, 411, 421, 728, 747
LmnI GCTCC 1 cut(s) 763
LweI GCATC 1 cut(s) 620
MaeI CTAG 2 cut(s) 48, 704
MaeIII GTNAC 4 cut(s) 557, 621, 693, 716
MalI GATC 9 cut(s) 62, 159, 207, 248, 269, 413, 423, 730, 749
MboI GATC 9 cut(s) 60, 157, 205, 246, 267, 411, 421, 728, 747
MboII GAAGA 5 cut(s) 55, 334, 370, 374, 723
MflI RGATCY 2 cut(s) 60, 728
MluCI AATT 7 cut(s) 339, 373, 459, 488, 575, 675, 699
MlyI GAGTC 1 cut(s) 134
Mph1103I ATGCAT 1 cut(s) 635
MroXI GAANNNNTTC 1 cut(s) 374
MseI TTAA 2 cut(s) 543, 636
MslI CAYNNNNRTG 2 cut(s) 242, 684
MspA1I CMGCKG 1 cut(s) 21
MspI CCGG 3 cut(s) 36, 168, 554
MspR9I CCNGG 3 cut(s) 54, 530, 555
Mva1269I GAATGC 1 cut(s) 607
MvaI CCWGG 2 cut(s) 54, 530
NciI CCSGG 1 cut(s) 555
NdeI CATATG 1 cut(s) 94
NdeII GATC 9 cut(s) 60, 157, 205, 246, 267, 411, 421, 728, 747
NheI GCTAGC 1 cut(s) 47
NlaIII CATG 6 cut(s) 245, 428, 511, 569, 592, 599
NlaIV GGNNCC 1 cut(s) 526
NmuCI GTSAC 1 cut(s) 693
NsiI ATGCAT 1 cut(s) 635
NspI RCATGY 1 cut(s) 569
NspV TTCGAA 1 cut(s) 8
OliI CACNNNNGTG 2 cut(s) 242, 684
PaeR7I CTCGAG 1 cut(s) 441
PagI TCATGA 1 cut(s) 424
PctI GAATGC 1 cut(s) 607
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 1 cut(s) 600
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp6I CCWGG 2 cut(s) 52, 528
PspEI GGTNACC 1 cut(s) 557
PspGI CCWGG 2 cut(s) 52, 528
PspN4I GGNNCC 1 cut(s) 526
PspPI GGNCC 1 cut(s) 276
PstI CTGCAG 1 cut(s) 352
PsuI RGATCY 2 cut(s) 60, 728
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
RseI CAYNNNNRTG 2 cut(s) 242, 684
SaqAI TTAA 2 cut(s) 543, 636
Sau3AI GATC 9 cut(s) 60, 157, 205, 246, 267, 411, 421, 728, 747
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 54, 530, 555
SetI ASST 9 cut(s) 200, 264, 399, 534, 539, 709, 715, 725, 760
SfaNI GCATC 1 cut(s) 620
SfcI CTRYAG 1 cut(s) 348
Sfr274I CTCGAG 1 cut(s) 441
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 1 cut(s) 276
SlaI CTCGAG 1 cut(s) 441
SmiI ATTTAAAT 1 cut(s) 544
SmiMI CAYNNNNRTG 2 cut(s) 242, 684
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 7 cut(s) 339, 373, 459, 488, 575, 675, 699
SsiI CCGC 1 cut(s) 21
SspMI CTAG 2 cut(s) 48, 704
StyD4I CCNGG 3 cut(s) 52, 528, 553
StyI CCWWGG 2 cut(s) 176, 292
SwaI ATTTAAAT 1 cut(s) 544
TaaI ACNGT 2 cut(s) 437, 470
TaqI TCGA 3 cut(s) 8, 231, 442
TasI AATT 7 cut(s) 339, 373, 459, 488, 575, 675, 699
TfiI GAWTC 1 cut(s) 600
Tru1I TTAA 2 cut(s) 543, 636
Tru9I TTAA 2 cut(s) 543, 636
TscAI CASTG 1 cut(s) 475
TseFI GTSAC 1 cut(s) 693
Tsp45I GTSAC 1 cut(s) 693
TspDTI ATGAA 4 cut(s) 55, 167, 441, 501
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 276
XapI RAATTY 3 cut(s) 339, 373, 575
XceI RCATGY 1 cut(s) 569
XhoI CTCGAG 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 570
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 2 cut(s) 48, 704
Zsp2I ATGCAT 1 cut(s) 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.