FvH4_3g42510

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009344
Physical Location & Seq
Forward (+)
35443794 .. 35446909
3116 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42510.t2

Sequence Viewer

Length: 915 bp
ATGAAAGATCGCTTCACCGGTACTCCGAGGGGTTTTGGGTTTATCACCTATGCTGATCCTTCTGTTGTTGACAAAGTTATCGAGGACACTCATGTGATCAATGGGAAGCAGGTTGAGATCAAGAGGACCATTCCCAAAGGCCAAGGGCAATCAAAGGACTTTAGGACTAAGAAGATATTTGTTGGTGGAATTCCATCTGCAGTTTCTGAGGAGGAGTTGAAAAGTTTCTTCTCGAAGTATGGGGAGGTTGTGGAACACCAGATCATACGGGATCATGAAACCAACCGTTCTCGAGGCTTTGGATTTGTAATTTTTGACAGTGAGGAAGTTGTAGATGAATTGTTATCCAAAGGAAACATGATTGATATGGAGGGTACCCAGGTGGAGATCAAGAAAGCTGAACCAAAGAAATCCTCAAATCCCCCACCTGCTCCTGCATATGGTAGCAATTCTAGGGCTCGTTCTTTCAATGATGGCTATGGTCCATATGGCAGTTCTTATGGTGGTTTTGATGGAGGATTTCCCCCTGGCCCCTATAGGACACCAGGTGCTCTTGGTGGAGGTAGATATGGTGGTGGTTATGGGTATGGTTATGGTAGCGATAGTGGTGAATTTGGCACTGGCTATGGAAGTTTTGGCAGCAGTAGCTTAGGTGGCTATAGGAGTGAATCTTCCCTTGGTTACACTAGTCGCCTGGGCCCTTATGGTGGTGGTTTTGGTGGTGGTTATGGTGCAAGTGGTTTAGGTGGTTATGGTCGAGGTGGTGGGGAAGGCTATGGAAGTGGAACTTATGGAAGTTCAAACTATGGTGGTGGATATGAATCTGGCACTGGTGGTACTTATGGTGGAGCAGGTGGAGCATATGGAAGGGGGGGCTATAGTAGCAGTAGTCGGTACCATCCATATTCAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0001667 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006403 GO:0006417 GO:0006928 GO:0006935 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007298 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007319 GO:0007350 GO:0007351 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008298 GO:0008358 GO:0008595 GO:0009605 GO:0009653 GO:0009790 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010631 GO:0016043 GO:0016477 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0030030 GO:0030154 GO:0030182 GO:0030707 GO:0030855 GO:0031175 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0034248 GO:0034249 GO:0034250 GO:0035282 GO:0035770 GO:0036464 GO:0040011 GO:0042221 GO:0042330 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045451 GO:0045495 GO:0045727 GO:0046011 GO:0048024 GO:0048027 GO:0048468 GO:0048469 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048599 GO:0048609 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051641 GO:0051674 GO:0051704 GO:0060255 GO:0060293 GO:0060429 GO:0060810 GO:0060811 GO:0061564 GO:0065007 GO:0070013 GO:0070727 GO:0071840 GO:0080090 GO:0090130 GO:0090132 GO:0097159 GO:0097485 GO:0120036 GO:0120039 GO:1901363 GO:1903311 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

305

Amino Acids

31.75

Weight (kDa)

8.42

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 20 - 87 1e-13 RNA recognition motif
RRM_7 PF16367 106 - 169 3.1e-09 RNA recognition motif
RRM_1 PF00076 108 - 176 3.3e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 436, 842
Acc36I ACCTGC 3 cut(s) 100, 436, 842
Acc65I GGTACC 2 cut(s) 374, 894
AccB1I GGYRCC 2 cut(s) 374, 894
AclWI GGATC 2 cut(s) 50, 279
AcsI RAATTY 2 cut(s) 189, 611
AdeI CACNNNGTG 1 cut(s) 548
AfaI GTAC 4 cut(s) 22, 376, 838, 896
AfiI CCNNNNNNNGG 2 cut(s) 440, 707
AgeI ACCGGT 1 cut(s) 17
AgsI TTSAA 4 cut(s) 220, 469, 801, 909
AhlI ACTAGT 1 cut(s) 686
AjnI CCWGG 4 cut(s) 378, 526, 544, 693
AjuI GAANNNNNNNTTGG 2 cut(s) 660, 692
AleI CACNNNNGTG 1 cut(s) 92
AluBI AGCT 2 cut(s) 398, 648
AluI AGCT 2 cut(s) 398, 648
Alw21I GWGCWC 1 cut(s) 553
AlwI GGATC 2 cut(s) 50, 279
AlwNI CAGNNNCTG 1 cut(s) 206
Ama87I CYCGRG 1 cut(s) 291
AoxI GGCC 3 cut(s) 139, 529, 697
ApaI GGGCCC 1 cut(s) 701
ApeKI GCWGC 1 cut(s) 639
ApoI RAATTY 2 cut(s) 189, 611
AsiGI ACCGGT 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 224
Asp718I GGTACC 2 cut(s) 374, 894
AspS9I GGNCC 5 cut(s) 126, 482, 530, 697, 698
AsuHPI GGTGA 3 cut(s) 7, 37, 620
AvaI CYCGRG 1 cut(s) 291
AvaII GGWCC 2 cut(s) 126, 482
BaeGI GKGCMC 1 cut(s) 701
BaeI ACNNNNGTAYC 2 cut(s) 366, 399
BanI GGYRCC 2 cut(s) 374, 894
BanII GRGCYC 2 cut(s) 460, 701
Bbv12I GWGCWC 1 cut(s) 553
BbvI GCAGC 1 cut(s) 651
BccI CCATC 4 cut(s) 202, 467, 506, 906
BciT130I CCWGG 4 cut(s) 380, 528, 546, 695
BclI TGATCA 1 cut(s) 96
BcuI ACTAGT 1 cut(s) 686
BfaI CTAG 2 cut(s) 453, 687
BfmI CTRYAG 4 cut(s) 198, 535, 658, 877
BfuAI ACCTGC 3 cut(s) 100, 436, 842
BisI GCNGC 1 cut(s) 640
BlsI GCNGC 1 cut(s) 641
Bme1390I CCNGG 4 cut(s) 380, 528, 546, 695
Bme18I GGWCC 2 cut(s) 126, 482
BmeT110I CYCGRG 1 cut(s) 291
BmgT120I GGNCC 5 cut(s) 126, 482, 530, 697, 698
BmiI GGNNCC 4 cut(s) 376, 532, 699, 896
BmrFI CCNGG 4 cut(s) 380, 528, 546, 695
Bpu10I CCTNAGC 1 cut(s) 649
BsaBI GATNNNNATC 1 cut(s) 820
BsaJI CCNNGG 6 cut(s) 26, 142, 378, 526, 676, 694
BsaWI WCCGGW 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 2 cut(s) 440, 707
Bse118I RCCGGY 1 cut(s) 17
Bse1I ACTGG 2 cut(s) 625, 835
Bse8I GATNNNNATC 1 cut(s) 820
BseBI CCWGG 4 cut(s) 380, 528, 546, 695
BseDI CCNNGG 6 cut(s) 26, 142, 378, 526, 676, 694
BseGI GGATG 1 cut(s) 898
BseJI GATNNNNATC 1 cut(s) 820
BseLI CCNNNNNNNGG 2 cut(s) 440, 707
BseMII CTCAG 1 cut(s) 198
BseNI ACTGG 2 cut(s) 625, 835
BseRI GAGGAG 2 cut(s) 224, 227
BseSI GKGCMC 1 cut(s) 701
BseXI GCAGC 1 cut(s) 651
BshFI GGCC 3 cut(s) 141, 531, 699
BshNI GGYRCC 2 cut(s) 374, 894
BshTI ACCGGT 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 553
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 1 cut(s) 18
BslI CCNNNNNNNGG 2 cut(s) 440, 707
BsnI GGCC 3 cut(s) 141, 531, 699
BsoBI CYCGRG 1 cut(s) 291
Bsp120I GGGCCC 1 cut(s) 697
Bsp1286I GDGCHC 3 cut(s) 460, 553, 701
Bsp143I GATC 7 cut(s) 7, 55, 96, 117, 261, 271, 387
BspANI GGCC 3 cut(s) 141, 531, 699
BspCNI CTCAG 1 cut(s) 199
BspHI TCATGA 1 cut(s) 274
BspLI GGNNCC 4 cut(s) 376, 532, 699, 896
BspMAI CTGCAG 1 cut(s) 202
BspMI ACCTGC 3 cut(s) 100, 436, 842
BspPI GGATC 2 cut(s) 50, 279
BspT107I GGYRCC 2 cut(s) 374, 894
BsrFI RCCGGY 1 cut(s) 17
BsrI ACTGG 2 cut(s) 625, 835
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 6 cut(s) 26, 142, 378, 526, 676, 694
BssMI GATC 7 cut(s) 7, 55, 96, 117, 261, 271, 387
BssT1I CCWWGG 2 cut(s) 142, 676
Bst2UI CCWGG 4 cut(s) 380, 528, 546, 695
Bst4CI ACNGT 2 cut(s) 287, 320
BstDEI CTNAG 3 cut(s) 168, 207, 649
BstF5I GGATG 1 cut(s) 898
BstKTI GATC 7 cut(s) 10, 58, 99, 120, 264, 274, 390
BstMBI GATC 7 cut(s) 7, 55, 96, 117, 261, 271, 387
BstMWI GCNNNNNNNGC 4 cut(s) 645, 654, 857, 882
BstNI CCWGG 4 cut(s) 380, 528, 546, 695
BstSCI CCNGG 4 cut(s) 378, 526, 544, 693
BstSFI CTRYAG 4 cut(s) 198, 535, 658, 877
BstSLI GKGCMC 1 cut(s) 701
BstV1I GCAGC 1 cut(s) 651
BsuRI GGCC 3 cut(s) 141, 531, 699
BtsCI GGATG 1 cut(s) 898
BtsIMutI CAGTG 3 cut(s) 325, 618, 828
BveI ACCTGC 3 cut(s) 100, 436, 842
CaiI CAGNNNCTG 1 cut(s) 206
CciI TCATGA 1 cut(s) 274
Cfr10I RCCGGY 1 cut(s) 17
Cfr13I GGNCC 5 cut(s) 126, 482, 530, 697, 698
CsiI ACCWGGT 1 cut(s) 544
Csp6I GTAC 4 cut(s) 21, 375, 837, 895
CspAI ACCGGT 1 cut(s) 17
CviAII CATG 3 cut(s) 92, 275, 358
CviQI GTAC 4 cut(s) 21, 375, 837, 895
DdeI CTNAG 3 cut(s) 168, 207, 649
DpnI GATC 7 cut(s) 9, 57, 98, 119, 263, 273, 389
DpnII GATC 7 cut(s) 7, 55, 96, 117, 261, 271, 387
DraIII CACNNNGTG 1 cut(s) 548
Eco130I CCWWGG 2 cut(s) 142, 676
Eco24I GRGCYC 2 cut(s) 460, 701
Eco47I GGWCC 2 cut(s) 126, 482
Eco88I CYCGRG 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 698
EcoRI GAATTC 1 cut(s) 189
EcoRII CCWGG 4 cut(s) 378, 526, 544, 693
EcoT14I CCWWGG 2 cut(s) 142, 676
EcoT38I GRGCYC 2 cut(s) 460, 701
ErhI CCWWGG 2 cut(s) 142, 676
FaeI CATG 3 cut(s) 95, 278, 361
FalI AAGNNNNNCTT 2 cut(s) 772, 804
FatI CATG 3 cut(s) 91, 274, 357
FauNDI CATATG 3 cut(s) 439, 487, 862
FbaI TGATCA 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 640
FokI GGATG 1 cut(s) 885
FriOI GRGCYC 2 cut(s) 460, 701
Fsp4HI GCNGC 1 cut(s) 640
FspBI CTAG 2 cut(s) 453, 687
GluI GCNGC 1 cut(s) 640
HaeIII GGCC 3 cut(s) 141, 531, 699
HapII CCGG 1 cut(s) 18
Hin1II CATG 3 cut(s) 95, 278, 361
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 2 cut(s) 668, 821
HpaII CCGG 1 cut(s) 18
HphI GGTGA 3 cut(s) 7, 37, 620
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 27, 208
Hpy188III TCNNGA 6 cut(s) 121, 232, 275, 291, 391, 909
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 3 cut(s) 69, 764, 861
HpyCH4III ACNGT 2 cut(s) 287, 320
HpyCH4V TGCA 3 cut(s) 200, 437, 734
HpyF10VI GCNNNNNNNGC 4 cut(s) 645, 654, 857, 882
HpyF3I CTNAG 3 cut(s) 168, 207, 649
Hsp92II CATG 3 cut(s) 95, 278, 361
KpnI GGTACC 2 cut(s) 378, 898
Ksp22I TGATCA 1 cut(s) 96
Kzo9I GATC 7 cut(s) 7, 55, 96, 117, 261, 271, 387
LmnI GCTCC 3 cut(s) 436, 848, 857
Lsp1109I GCAGC 1 cut(s) 651
MabI ACCWGGT 1 cut(s) 544
MaeI CTAG 2 cut(s) 453, 687
MaeIII GTNAC 1 cut(s) 680
MalI GATC 7 cut(s) 9, 57, 98, 119, 263, 273, 389
MboI GATC 7 cut(s) 7, 55, 96, 117, 261, 271, 387
MboII GAAGA 3 cut(s) 184, 220, 663
MhlI GDGCHC 3 cut(s) 460, 553, 701
MluCI AATT 5 cut(s) 189, 309, 338, 448, 611
MroXI GAANNNNTTC 1 cut(s) 224
MslI CAYNNNNRTG 1 cut(s) 92
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 4 cut(s) 380, 528, 546, 695
MvaI CCWGG 4 cut(s) 380, 528, 546, 695
MwoI GCNNNNNNNGC 4 cut(s) 645, 654, 857, 882
NdeI CATATG 3 cut(s) 439, 487, 862
NdeII GATC 7 cut(s) 7, 55, 96, 117, 261, 271, 387
NlaIII CATG 3 cut(s) 95, 278, 361
NlaIV GGNNCC 4 cut(s) 376, 532, 699, 896
OliI CACNNNNGTG 1 cut(s) 92
PaeR7I CTCGAG 1 cut(s) 291
PagI TCATGA 1 cut(s) 274
PaqCI CACCTGC 2 cut(s) 436, 842
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 2 cut(s) 668, 821
PinAI ACCGGT 1 cut(s) 17
PkrI GCNGC 1 cut(s) 641
Psp6I CCWGG 4 cut(s) 378, 526, 544, 693
PspGI CCWGG 4 cut(s) 378, 526, 544, 693
PspN4I GGNNCC 4 cut(s) 376, 532, 699, 896
PspOMI GGGCCC 1 cut(s) 697
PspPI GGNCC 5 cut(s) 126, 482, 530, 697, 698
PstI CTGCAG 1 cut(s) 202
PstNI CAGNNNCTG 1 cut(s) 206
RsaI GTAC 4 cut(s) 22, 376, 838, 896
RsaNI GTAC 4 cut(s) 21, 375, 837, 895
RseI CAYNNNNRTG 1 cut(s) 92
SatI GCNGC 1 cut(s) 640
Sau3AI GATC 7 cut(s) 7, 55, 96, 117, 261, 271, 387
Sau96I GGNCC 5 cut(s) 126, 482, 530, 697, 698
ScrFI CCNGG 4 cut(s) 380, 528, 546, 695
SduI GDGCHC 3 cut(s) 460, 553, 701
SexAI ACCWGGT 1 cut(s) 544
SfcI CTRYAG 4 cut(s) 198, 535, 658, 877
Sfr274I CTCGAG 1 cut(s) 291
SinI GGWCC 2 cut(s) 126, 482
SlaI CTCGAG 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
SpeI ACTAGT 1 cut(s) 686
Sse9I AATT 5 cut(s) 189, 309, 338, 448, 611
SspMI CTAG 2 cut(s) 453, 687
StyD4I CCNGG 4 cut(s) 378, 526, 544, 693
StyI CCWWGG 2 cut(s) 142, 676
TaaI ACNGT 2 cut(s) 287, 320
TaqI TCGA 4 cut(s) 81, 233, 292, 757
TasI AATT 5 cut(s) 189, 309, 338, 448, 611
TfiI GAWTC 2 cut(s) 668, 821
TscAI CASTG 3 cut(s) 325, 625, 835
TseI GCWGC 1 cut(s) 639
TspDTI ATGAA 4 cut(s) 17, 291, 351, 834
TspRI CASTG 3 cut(s) 325, 625, 835
VpaK11BI GGWCC 2 cut(s) 126, 482
XapI RAATTY 2 cut(s) 189, 611
XhoI CTCGAG 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 2 cut(s) 453, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.