Rorug05G0445400

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009344
Physical Location & Seq
Reverse (-)
61706037 .. 61706753
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0445400.1

Sequence Viewer

Length: 480 bp
ATGGCCCATAGGAGCCTCATTAACTTTGCCCCACAGACCCAAAGGCCAACGATTTTTATTAGTTCTCCCGTGACAAAGTGGAAATGCCCTCTGCGGGGTAGACTCAAAATAAACAATGTTGGTGCTTCTAGATTGGCTAATGGTGAAGGAGGTATTGGTGTGGTGGTCAAAGATGATTTGGGCCTGGGTATTGCAGCCATTGCTAGACATTTTCTACATACACACTCGGCTATTAATATGGAGGTTGAGGCGTGTAGAGCTGGTCTTCTTCTTGGTATACACCAAGGTTGGACGAAAGTAGACATTGAGAGCGACTCTGCCCTTCTAATTGCTGCACTAAAGAATGAGGACAAAAATTTCTCGGATGTAAGTTGGGTTTTTGATGATTGTAAGGAGTACTTAACTATTTTTCAATATGTAGAAATTCGACATATTTGCCGTGAAGCAAATGGTGTTGCACATAAGCTTGTACCTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0001667 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006403 GO:0006417 GO:0006928 GO:0006935 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007298 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007319 GO:0007350 GO:0007351 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008298 GO:0008358 GO:0008595 GO:0009605 GO:0009653 GO:0009790 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010631 GO:0016043 GO:0016477 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0030030 GO:0030154 GO:0030182 GO:0030707 GO:0030855 GO:0031175 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0034248 GO:0034249 GO:0034250 GO:0035282 GO:0035770 GO:0036464 GO:0040011 GO:0042221 GO:0042330 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045451 GO:0045495 GO:0045727 GO:0046011 GO:0048024 GO:0048027 GO:0048468 GO:0048469 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048599 GO:0048609 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051641 GO:0051674 GO:0051704 GO:0060255 GO:0060293 GO:0060429 GO:0060810 GO:0060811 GO:0061564 GO:0065007 GO:0070013 GO:0070727 GO:0071840 GO:0080090 GO:0090130 GO:0090132 GO:0097159 GO:0097485 GO:0120036 GO:0120039 GO:1901363 GO:1903311 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

159

Amino Acids

17.56

Weight (kDa)

8.31

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 45 - 157 8.1e-18 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 100, 277, 300
AciI CCGC 1 cut(s) 94
AcsI RAATTY 2 cut(s) 355, 423
AfaI GTAC 2 cut(s) 398, 471
AfiI CCNNNNNNNGG 2 cut(s) 94, 95
AgsI TTSAA 1 cut(s) 413
AjnI CCWGG 1 cut(s) 183
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AluBI AGCT 2 cut(s) 260, 466
AluI AGCT 2 cut(s) 260, 466
AoxI GGCC 3 cut(s) 3, 44, 181
ApeKI GCWGC 2 cut(s) 194, 332
ApoI RAATTY 2 cut(s) 355, 423
AseI ATTAAT 1 cut(s) 234
AspS9I GGNCC 2 cut(s) 4, 181
AsuHPI GGTGA 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 257
BbvI GCAGC 2 cut(s) 206, 319
BceAI ACGGC 1 cut(s) 423
BcgI CGANNNNNNTGC 2 cut(s) 417, 451
BciT130I CCWGG 1 cut(s) 185
BfaI CTAG 3 cut(s) 129, 204, 478
BisI GCNGC 2 cut(s) 195, 333
BlsI GCNGC 2 cut(s) 196, 334
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 1 cut(s) 185
BmgT120I GGNCC 2 cut(s) 4, 181
BmiI GGNNCC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 257
BplI GAGNNNNNCTC 2 cut(s) 299, 331
BsaJI CCNNGG 2 cut(s) 184, 283
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 95
Bse3DI GCAATG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 184, 283
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 2 cut(s) 94, 95
BseMI GCAATG 1 cut(s) 198
BseXI GCAGC 2 cut(s) 206, 319
BsgI GTGCAG 1 cut(s) 318
BshFI GGCC 3 cut(s) 5, 46, 183
BslI CCNNNNNNNGG 2 cut(s) 94, 95
BsnI GGCC 3 cut(s) 5, 46, 183
BspACI CCGC 1 cut(s) 94
BspANI GGCC 3 cut(s) 5, 46, 183
BspLI GGNNCC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 184, 283
BssNAI GTATAC 1 cut(s) 278
BssT1I CCWWGG 1 cut(s) 283
Bst1107I GTATAC 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 200
BstF5I GGATG 1 cut(s) 370
BstMWI GCNNNNNNNGC 2 cut(s) 200, 257
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 206, 319
BstV2I GAAGAC 1 cut(s) 257
BstZ17I GTATAC 1 cut(s) 278
BsuRI GGCC 3 cut(s) 5, 46, 183
BtsCI GGATG 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 4, 181
Csp6I GTAC 2 cut(s) 397, 470
CviJI RGCY 9 cut(s) 5, 15, 46, 137, 183, 197, 230, 260, 466
CviKI_1 RGCY 9 cut(s) 5, 15, 46, 137, 183, 197, 230, 260, 466
CviQI GTAC 2 cut(s) 397, 470
Eco130I CCWWGG 1 cut(s) 283
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
FaiI YATR 7 cut(s) 9, 219, 239, 278, 417, 432, 462
FalI AAGNNNNNCTT 2 cut(s) 383, 415
FauI CCCGC 1 cut(s) 87
FblI GTMKAC 3 cut(s) 100, 277, 300
Fnu4HI GCNGC 2 cut(s) 195, 333
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 2 cut(s) 195, 333
FspBI CTAG 3 cut(s) 129, 204, 478
GluI GCNGC 2 cut(s) 195, 333
HaeIII GGCC 3 cut(s) 5, 46, 183
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 2 cut(s) 102, 314
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 3 cut(s) 101, 278, 301
Hpy188I TCNGA 1 cut(s) 364
Hpy188III TCNNGA 1 cut(s) 129
Hpy8I GTNNAC 3 cut(s) 101, 278, 301
HpyAV CCTTC 2 cut(s) 140, 332
HpyCH4V TGCA 3 cut(s) 194, 335, 458
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 257
LmnI GCTCC 1 cut(s) 12
LpnPI CCDG 3 cut(s) 170, 197, 246
Lsp1109I GCAGC 2 cut(s) 206, 319
MaeI CTAG 3 cut(s) 129, 204, 478
MaeIII GTNAC 1 cut(s) 70
MboII GAAGA 2 cut(s) 257, 260
MluCI AATT 3 cut(s) 327, 355, 423
MlyI GAGTC 2 cut(s) 96, 308
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 6 cut(s) 26, 99, 143, 235, 241, 340
MseI TTAA 3 cut(s) 21, 234, 401
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 200, 257
NlaIV GGNNCC 1 cut(s) 14
NmeAIII GCCGAG 1 cut(s) 206
NmuCI GTSAC 1 cut(s) 70
PkrI GCNGC 2 cut(s) 196, 334
PleI GAGTC 2 cut(s) 96, 308
PpsI GAGTC 2 cut(s) 96, 308
PshBI ATTAAT 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspN4I GGNNCC 1 cut(s) 14
PspPI GGNCC 2 cut(s) 4, 181
RsaI GTAC 2 cut(s) 398, 471
RsaNI GTAC 2 cut(s) 397, 470
SaqAI TTAA 3 cut(s) 21, 234, 401
SatI GCNGC 2 cut(s) 195, 333
Sau96I GGNCC 2 cut(s) 4, 181
ScaI AGTACT 1 cut(s) 398
SchI GAGTC 2 cut(s) 96, 308
ScrFI CCNGG 1 cut(s) 185
SetI ASST 6 cut(s) 154, 246, 262, 289, 468, 475
Sse9I AATT 3 cut(s) 327, 355, 423
SsiI CCGC 1 cut(s) 94
SspMI CTAG 3 cut(s) 129, 204, 478
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 1 cut(s) 283
TaqI TCGA 1 cut(s) 427
TasI AATT 3 cut(s) 327, 355, 423
TatI WGTACW 1 cut(s) 396
Tru1I TTAA 3 cut(s) 21, 234, 401
Tru9I TTAA 3 cut(s) 21, 234, 401
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 2 cut(s) 194, 332
Tsp45I GTSAC 1 cut(s) 70
VspI ATTAAT 1 cut(s) 234
XapI RAATTY 2 cut(s) 355, 423
XbaI TCTAGA 1 cut(s) 128
XmiI GTMKAC 3 cut(s) 100, 277, 300
XspI CTAG 3 cut(s) 129, 204, 478
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.