Rh5DG535400

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0009344
Physical Location & Seq
Forward (+)
82590459 .. 82614710
24252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG535400.1

Sequence Viewer

Length: 576 bp
ATGGGTTCGAAATCGCACAGCGGTCATCCTCACTCCGGCGACGGTGCTAGCCCTGGAAAGATCTTCATTGGTGGATTGGCAAAAGATACCACATATGCTACATTTACTAAGCATTTTGGGAAATATGGAGAAATAGTGGACTCTGTGATAATGAAAGATCGGTTCACCGGAACTCCAAGGGGCTTTGGGTTTATTACCTATGCTGATCCTTCCGTTGTTGACAAAGTTATTGAGGACACTCATGTGATCAATGGAAAGCAGGTCGAGATCAAGAGGACCATTCCTAAAGGCCAAGGCCAATCAAAGGACTTTAGGACAAAGAAGATATTTGTTGGTGGAATTCCATCTGCAGTTCCCGAGGAAGAGTTGAAAAATTTCTTCTCAAAGTATGGAGAGGTTGTGGAACACCAGATCATACGGGATCATGAAACCAACCGTTCTCGAGGCTTTGGATTTGTAATTTTTGACAGTGAGGAAGTTGTAGATGAATTGTTATCTAAAGGAAACATGATAGATATGGAGGGTACCCAGCTAGCTGAGATGGGTTGGATTTTGAAGCAACAGCGTGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0001667 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006403 GO:0006417 GO:0006928 GO:0006935 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007298 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007319 GO:0007350 GO:0007351 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008298 GO:0008358 GO:0008595 GO:0009605 GO:0009653 GO:0009790 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010631 GO:0016043 GO:0016477 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0030030 GO:0030154 GO:0030182 GO:0030707 GO:0030855 GO:0031175 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0034248 GO:0034249 GO:0034250 GO:0035282 GO:0035770 GO:0036464 GO:0040011 GO:0042221 GO:0042330 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045451 GO:0045495 GO:0045727 GO:0046011 GO:0048024 GO:0048027 GO:0048468 GO:0048469 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048599 GO:0048609 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051641 GO:0051674 GO:0051704 GO:0060255 GO:0060293 GO:0060429 GO:0060810 GO:0060811 GO:0061564 GO:0065007 GO:0070013 GO:0070727 GO:0071840 GO:0080090 GO:0090130 GO:0090132 GO:0097159 GO:0097485 GO:0120036 GO:0120039 GO:1901363 GO:1903311 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

191

Amino Acids

21.25

Weight (kDa)

6.66

Isoelectric Point (pI)

25.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 21 - 88 1.3e-14 RNA recognition motif
RRM_7 PF16367 107 - 169 1e-09 RNA recognition motif
RRM_1 PF00076 109 - 177 4.4e-17 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
Acc65I GGTACC 1 cut(s) 524
AccB1I GGYRCC 1 cut(s) 524
AciI CCGC 1 cut(s) 21
AclWI GGATC 2 cut(s) 200, 429
AcsI RAATTY 2 cut(s) 339, 373
AfaI GTAC 1 cut(s) 526
AfiI CCNNNNNNNGG 2 cut(s) 35, 304
AgsI TTSAA 2 cut(s) 370, 556
AjnI CCWGG 1 cut(s) 52
AleI CACNNNNGTG 1 cut(s) 242
AluBI AGCT 2 cut(s) 532, 536
AluI AGCT 2 cut(s) 532, 536
AlwI GGATC 2 cut(s) 200, 429
Ama87I CYCGRG 2 cut(s) 356, 441
AoxI GGCC 2 cut(s) 289, 295
ApoI RAATTY 2 cut(s) 339, 373
Asp700I GAANNNNTTC 1 cut(s) 374
Asp718I GGTACC 1 cut(s) 524
AspS9I GGNCC 1 cut(s) 276
AsuHPI GGTGA 1 cut(s) 157
AsuII TTCGAA 1 cut(s) 8
AsuNHI GCTAGC 2 cut(s) 47, 532
AvaI CYCGRG 2 cut(s) 356, 441
AvaII GGWCC 1 cut(s) 276
BanI GGYRCC 1 cut(s) 524
BccI CCATC 2 cut(s) 352, 535
BciT130I CCWGG 1 cut(s) 54
BclI TGATCA 1 cut(s) 246
BfaI CTAG 2 cut(s) 48, 533
BfmI CTRYAG 1 cut(s) 348
BfuAI ACCTGC 1 cut(s) 250
BglII AGATCT 1 cut(s) 60
Bme1390I CCNGG 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 276
BmeT110I CYCGRG 2 cut(s) 356, 441
BmgT120I GGNCC 1 cut(s) 276
BmiI GGNNCC 1 cut(s) 526
BmrFI CCNGG 1 cut(s) 54
BmtI GCTAGC 2 cut(s) 51, 536
Bpu14I TTCGAA 1 cut(s) 8
BsaJI CCNNGG 4 cut(s) 52, 176, 292, 357
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 6 cut(s) 120, 150, 157, 187, 384, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 35, 304
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 4 cut(s) 52, 176, 292, 357
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 2 cut(s) 35, 304
BseMII CTCAG 1 cut(s) 528
BseYI CCCAGC 1 cut(s) 528
BshFI GGCC 2 cut(s) 291, 297
BshNI GGYRCC 1 cut(s) 524
BsiHKCI CYCGRG 2 cut(s) 356, 441
BsiSI CCGG 2 cut(s) 36, 168
BslI CCNNNNNNNGG 2 cut(s) 35, 304
BsnI GGCC 2 cut(s) 291, 297
BsoBI CYCGRG 2 cut(s) 356, 441
Bsp119I TTCGAA 1 cut(s) 8
Bsp143I GATC 7 cut(s) 60, 157, 205, 246, 267, 411, 421
BspACI CCGC 1 cut(s) 21
BspANI GGCC 2 cut(s) 291, 297
BspCNI CTCAG 1 cut(s) 529
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 1 cut(s) 526
BspMAI CTGCAG 1 cut(s) 352
BspMI ACCTGC 1 cut(s) 250
BspOI GCTAGC 2 cut(s) 51, 536
BspPI GGATC 2 cut(s) 200, 429
BspT104I TTCGAA 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 524
BssECI CCNNGG 4 cut(s) 52, 176, 292, 357
BssMI GATC 7 cut(s) 60, 157, 205, 246, 267, 411, 421
BssT1I CCWWGG 2 cut(s) 176, 292
Bst2UI CCWGG 1 cut(s) 54
Bst4CI ACNGT 3 cut(s) 44, 437, 470
Bst6I CTCTTC 1 cut(s) 357
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 49, 534
BstDEI CTNAG 2 cut(s) 108, 537
BstF5I GGATG 1 cut(s) 25
BstKTI GATC 7 cut(s) 63, 160, 208, 249, 270, 414, 424
BstMBI GATC 7 cut(s) 60, 157, 205, 246, 267, 411, 421
BstNI CCWGG 1 cut(s) 54
BstSCI CCNGG 1 cut(s) 52
BstSFI CTRYAG 1 cut(s) 348
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuRI GGCC 2 cut(s) 291, 297
BtsCI GGATG 1 cut(s) 25
BtsIMutI CAGTG 1 cut(s) 475
BveI ACCTGC 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 49, 534
CciI TCATGA 1 cut(s) 424
Cfr13I GGNCC 1 cut(s) 276
Csp6I GTAC 1 cut(s) 525
CviAII CATG 3 cut(s) 242, 425, 508
CviJI RGCY 7 cut(s) 51, 183, 291, 297, 447, 532, 536
CviKI_1 RGCY 7 cut(s) 51, 183, 291, 297, 447, 532, 536
CviQI GTAC 1 cut(s) 525
DdeI CTNAG 2 cut(s) 108, 537
DpnI GATC 7 cut(s) 62, 159, 207, 248, 269, 413, 423
DpnII GATC 7 cut(s) 60, 157, 205, 246, 267, 411, 421
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 2 cut(s) 176, 292
Eco47I GGWCC 1 cut(s) 276
Eco88I CYCGRG 2 cut(s) 356, 441
EcoRI GAATTC 1 cut(s) 339
EcoRII CCWGG 1 cut(s) 52
EcoT14I CCWWGG 2 cut(s) 176, 292
ErhI CCWWGG 2 cut(s) 176, 292
FaeI CATG 3 cut(s) 245, 428, 511
FatI CATG 3 cut(s) 241, 424, 507
FauNDI CATATG 1 cut(s) 94
FbaI TGATCA 1 cut(s) 246
FokI GGATG 1 cut(s) 12
FspBI CTAG 2 cut(s) 48, 533
GsaI CCCAGC 1 cut(s) 532
HaeIII GGCC 2 cut(s) 291, 297
HapII CCGG 2 cut(s) 36, 168
Hin1II CATG 3 cut(s) 245, 428, 511
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 1 cut(s) 140
HpaII CCGG 2 cut(s) 36, 168
HphI GGTGA 1 cut(s) 157
Hpy166II GTNNAC 3 cut(s) 139, 165, 220
Hpy188III TCNNGA 5 cut(s) 265, 271, 356, 425, 441
Hpy8I GTNNAC 3 cut(s) 139, 165, 220
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 219
HpyCH4III ACNGT 3 cut(s) 44, 437, 470
HpyCH4V TGCA 1 cut(s) 350
HpyF3I CTNAG 2 cut(s) 108, 537
Hsp92II CATG 3 cut(s) 245, 428, 511
KpnI GGTACC 1 cut(s) 528
Ksp22I TGATCA 1 cut(s) 246
Kzo9I GATC 7 cut(s) 60, 157, 205, 246, 267, 411, 421
LpnPI CCDG 7 cut(s) 39, 49, 66, 181, 245, 422, 542
MaeI CTAG 2 cut(s) 48, 533
MalI GATC 7 cut(s) 62, 159, 207, 248, 269, 413, 423
MboI GATC 7 cut(s) 60, 157, 205, 246, 267, 411, 421
MboII GAAGA 4 cut(s) 55, 334, 370, 374
MflI RGATCY 1 cut(s) 60
MluCI AATT 4 cut(s) 339, 373, 459, 488
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 527
MnlI CCTC 8 cut(s) 39, 226, 267, 352, 388, 437, 466, 514
MroXI GAANNNNTTC 1 cut(s) 374
MslI CAYNNNNRTG 1 cut(s) 242
MspA1I CMGCKG 1 cut(s) 21
MspI CCGG 2 cut(s) 36, 168
MspR9I CCNGG 1 cut(s) 54
MvaI CCWGG 1 cut(s) 54
NdeI CATATG 1 cut(s) 94
NdeII GATC 7 cut(s) 60, 157, 205, 246, 267, 411, 421
NheI GCTAGC 2 cut(s) 47, 532
NlaIII CATG 3 cut(s) 245, 428, 511
NlaIV GGNNCC 1 cut(s) 526
NspV TTCGAA 1 cut(s) 8
OliI CACNNNNGTG 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 441
PagI TCATGA 1 cut(s) 424
PdmI GAANNNNTTC 1 cut(s) 374
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp6I CCWGG 1 cut(s) 52
PspFI CCCAGC 1 cut(s) 528
PspGI CCWGG 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 526
PspPI GGNCC 1 cut(s) 276
PstI CTGCAG 1 cut(s) 352
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 1 cut(s) 526
RsaNI GTAC 1 cut(s) 525
RseI CAYNNNNRTG 1 cut(s) 242
Sau3AI GATC 7 cut(s) 60, 157, 205, 246, 267, 411, 421
Sau96I GGNCC 1 cut(s) 276
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 54
SetI ASST 5 cut(s) 200, 264, 399, 534, 538
SfcI CTRYAG 1 cut(s) 348
Sfr274I CTCGAG 1 cut(s) 441
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 1 cut(s) 276
SlaI CTCGAG 1 cut(s) 441
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
Sse9I AATT 4 cut(s) 339, 373, 459, 488
SsiI CCGC 1 cut(s) 21
SspMI CTAG 2 cut(s) 48, 533
StyD4I CCNGG 1 cut(s) 52
StyI CCWWGG 2 cut(s) 176, 292
TaaI ACNGT 3 cut(s) 44, 437, 470
TaqI TCGA 3 cut(s) 8, 264, 442
TasI AATT 4 cut(s) 339, 373, 459, 488
TscAI CASTG 1 cut(s) 475
TspDTI ATGAA 4 cut(s) 55, 167, 441, 501
TspGWI ACGGA 1 cut(s) 202
TspRI CASTG 1 cut(s) 475
VpaK11BI GGWCC 1 cut(s) 276
XapI RAATTY 2 cut(s) 339, 373
XhoI CTCGAG 1 cut(s) 441
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 2 cut(s) 48, 533
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.