Rorug05G0445500

Heterogeneous nuclear ribonucleoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009344
Physical Location & Seq
Reverse (-)
61734962 .. 61737683
2722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0445500.1

Sequence Viewer

Length: 1872 bp
ATGAGGAACTTGTTCTTTAGATCAGCATCTCCATCGCCTTCAAACTCTCCATCCAGAAGCACCATACCACCTTCCTCACCTCGCCACAGCTTCTCCGACTCGTTGATGGAGGAGAACATCGAAATCGCACAGACTCTTATCACGAAATGGGACTCTTCCGACGTCTCGTCTTATACAAAGCTCACCTGTCTCTTCTACGACAACCGCCAGGAAGCCAAGCTGTATCTCAAATGCGTCACGGACTTACAGTCGGCCATGCACCACTTCGTTAATTCTCCAGACTCCAGCGCGGAAAAGCTAATTACGGCCCAAACTTTGATGCAGACGGCAATGAAGAGACTTGAGAAGGAATTTTACCAGGTTTTATCGGATAACAGAGAGAATCTAGACGCCGAGACAGTGTCGTCTAGCCGCTCTTCTGAATCGAGGGCCTCCCCTCCCCGAACCCCGACTCGGTCCAGCGTTTCGGATTTGGAATCTGAATCCGAGGACGAGTCGACATTTCTGGAAGGGGAGCAAATTGCCACTATTCCTATGGAGGATTTGAAATCCATCGCCGACTGTATGATATCCGCCGGCTATGGAAAAGAGTGCGTCAAGATCTACAAGATCATCAGAAAATCGATTGTGGACGAAGGACTGTACCATCTCGGAGTCGAGAAGCTGAGCCTCTCTCAGGTTCAGAAGATGGACTGGAACGTTCTGGAGACGAAAATCAAGTACTGGCTTAACGCCGTCAAAGTCGCCGTGAAAAATCTCTTCTACGGCGAGAGGATGCTCTGCGACTATGTCTTCTCCGCCTCCAATTCCATAAGGGAGTCTTGCTTCAGCGAGATTTCCAAAGAGGCCGCCATGACACTGTTTGGCTTCCCGGAATTGGTGGCCAGATGCAAGAAATCTCCAGAGAAGATGTTCCGGACTCTCGATTTGTACCAGGCCATATCCGATTTGTGGCCGGAAATCGAGTCCATATTCTCGTTCGAATCAACCTCGGCCGTCCGATCTTTGGGCGTTAACTCTCTCATCAAACTCGGCGAGGCCGTCCGGACGATGCTCGAGGATTTCGAAGCTGCCATTCAGAAGGACCATTCCAAAACCGCTGTCCCAGCCGGTGGGGTCCACCCTCTTACGCGTTATGTCATGAATTACATCACCTTCCTAACGGATTACACCGAAATACTCGCCGATATTTTCGCCGACTACCCGCTGACGCTTCAGACGCCGTTGCCGGAAGCCTACTTCGGCTGCTATGACGTCGATGAGTCGCCGATTTCAGTACGGATCGCTTGGCTGGTTCTTGTGCTGCTCTGCAAACTCGACGGTAAGACCGAGCTGTACAAGGACGTGGCACTTTCCTATTTGTTCTTGGCCAATAATTTGCAATATGTTGTCGCTAAGGTTCGTAACTCCAACCTCAAGTACTTACTCGGCGACTACTGGGTCGGCAAGCACGAGTCCAAGGTCAAACAATACGCCGGCAACTACGAGCGCATGGGATGGAGCAAGGTTTATGCTTCATTGCCGGAAAATCCAACGGCTGAGATTTCCTCCGACCAGGCAAAGAAATACTTCAAGCAATTCAACGCAGCGTTTGAGGAAGCGTACAAGAAGCAATCCTCATGGGTCGTGACGGACCCGAAACTCCGAGACGAGCTCAAGGTTGCGGTGGCGAAGAAGCTGGTGCCGGCTTACCGGGAGTTTTACGAGAAGCATAGAGTCGGGTTGAGGAGGGAGTGCGGAGTGGACTCATTGGTCAGATATGCCCCTGAGAATTTAGATAATTACTTGTCGGATTTGTTGTATGGGGCCTCAGGTGCAGGGAGCGTTTCGTCATCTTTCTCGATGTCGTGTTCGAATTCACAGGGTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000578 GO:0000902 GO:0000904 GO:0001667 GO:0002064 GO:0002065 GO:0002066 GO:0003002 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0003729 GO:0003730 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006403 GO:0006417 GO:0006928 GO:0006935 GO:0007028 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007297 GO:0007298 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007316 GO:0007319 GO:0007350 GO:0007351 GO:0007389 GO:0007399 GO:0007409 GO:0007411 GO:0008150 GO:0008298 GO:0008358 GO:0008595 GO:0009605 GO:0009653 GO:0009790 GO:0009798 GO:0009880 GO:0009888 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009948 GO:0009952 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010629 GO:0010631 GO:0016043 GO:0016477 GO:0017148 GO:0019094 GO:0019219 GO:0019222 GO:0019953 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0030030 GO:0030154 GO:0030182 GO:0030707 GO:0030855 GO:0031175 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032270 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0032990 GO:0032991 GO:0033036 GO:0034248 GO:0034249 GO:0034250 GO:0035282 GO:0035770 GO:0036464 GO:0040011 GO:0042221 GO:0042330 GO:0043186 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043484 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045451 GO:0045495 GO:0045727 GO:0046011 GO:0048024 GO:0048027 GO:0048468 GO:0048469 GO:0048477 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048599 GO:0048609 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0048870 GO:0050684 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051179 GO:0051246 GO:0051247 GO:0051248 GO:0051252 GO:0051641 GO:0051674 GO:0051704 GO:0060255 GO:0060293 GO:0060429 GO:0060810 GO:0060811 GO:0061564 GO:0065007 GO:0070013 GO:0070727 GO:0071840 GO:0080090 GO:0090130 GO:0090132 GO:0097159 GO:0097485 GO:0120036 GO:0120039 GO:1901363 GO:1903311 GO:1990904 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

623

Amino Acids

70.43

Weight (kDa)

5.74

Isoelectric Point (pI)

51.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo70_N PF20669 40 - 123 7.8e-18 Exocyst complex component Exo70 N-terminal
Exo70_C PF03081 242 - 598 8.2e-123 Exo70 exocyst complex subunit C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 3 cut(s) 403, 1439, 1751
AatII GACGTC 2 cut(s) 165, 1257
AccB1I GGYRCC 1 cut(s) 1681
AccB7I CCANNNNNTGG 1 cut(s) 1112
AccBSI CCGCTC 1 cut(s) 414
AccI GTMKAC 1 cut(s) 497
AccII CGCG 2 cut(s) 290, 1132
AccIII TCCGGA 2 cut(s) 915, 1044
AclI AACGTT 1 cut(s) 699
AclWI GGATC 1 cut(s) 1289
AcoI YGGCCR 5 cut(s) 252, 882, 953, 993, 1368
AcsI RAATTY 3 cut(s) 350, 1771, 1855
AcuI CTGAAG 2 cut(s) 811, 1199
AcyI GRCGYC 4 cut(s) 162, 390, 1220, 1254
AfaI GTAC 7 cut(s) 644, 722, 932, 1278, 1337, 1421, 1604
AfiI CCNNNNNNNGG 6 cut(s) 453, 676, 877, 951, 1006, 1112
AflIII ACRYGT 1 cut(s) 1130
AgsI TTSAA 4 cut(s) 42, 547, 1573, 1582
AhdI GACNNNNNGTC 2 cut(s) 166, 247
AjiI CACGTC 1 cut(s) 1345
AjnI CCWGG 4 cut(s) 207, 357, 933, 1554
AluBI AGCT 9 cut(s) 90, 181, 220, 298, 664, 1070, 1333, 1654, 1678
AluI AGCT 9 cut(s) 90, 181, 220, 298, 664, 1070, 1333, 1654, 1678
Alw21I GWGCWC 1 cut(s) 1656
Alw26I GTCTC 6 cut(s) 169, 194, 331, 389, 701, 1641
AlwI GGATC 1 cut(s) 1289
Ama87I CYCGRG 1 cut(s) 1055
Aor13HI TCCGGA 2 cut(s) 915, 1044
ApeKI GCWGC 4 cut(s) 1070, 1245, 1303, 1586
ApoI RAATTY 3 cut(s) 350, 1771, 1855
ArsI GACNNNNNNTTYG 4 cut(s) 910, 942, 1086, 1118
Asp700I GAANNNNTTC 3 cut(s) 11, 911, 1568
AspLEI GCGC 2 cut(s) 290, 1491
AspS9I GGNCC 7 cut(s) 307, 429, 456, 1084, 1117, 1633, 1806
AsuC2I CCSGG 2 cut(s) 872, 1694
AsuHPI GGTGA 3 cut(s) 69, 175, 1144
AsuII TTCGAA 3 cut(s) 981, 1065, 1853
AvaI CYCGRG 1 cut(s) 1055
AvaII GGWCC 4 cut(s) 456, 1084, 1117, 1633
AxyI CCTNAGG 1 cut(s) 1810
BalI TGGCCA 2 cut(s) 884, 1370
BanI GGYRCC 1 cut(s) 1681
BanII GRGCYC 1 cut(s) 1656
BarI GAAGNNNNNNTAC 2 cut(s) 338, 370
BauI CACGAG 1 cut(s) 1451
BbsI GAAGAC 1 cut(s) 784
Bbv12I GWGCWC 1 cut(s) 1656
BbvI GCAGC 4 cut(s) 1057, 1232, 1290, 1598
BccI CCATC 7 cut(s) 40, 58, 100, 560, 654, 682, 1491
BceAI ACGGC 9 cut(s) 321, 342, 719, 731, 781, 980, 1025, 1207, 1551
BcgI CGANNNNNNTGC 2 cut(s) 15, 49
BciT130I CCWGG 4 cut(s) 209, 359, 935, 1556
BcnI CCSGG 2 cut(s) 872, 1694
BcoDI GTCTC 6 cut(s) 169, 194, 331, 389, 701, 1641
BfaI CTAG 2 cut(s) 386, 408
BglII AGATCT 1 cut(s) 600
BisI GCNGC 6 cut(s) 412, 849, 1071, 1246, 1304, 1587
BlpI GCTNAGC 1 cut(s) 665
BlsI GCNGC 6 cut(s) 413, 850, 1072, 1247, 1305, 1588
BmcAI AGTACT 2 cut(s) 722, 1421
Bme1390I CCNGG 6 cut(s) 209, 359, 872, 935, 1556, 1694
Bme18I GGWCC 4 cut(s) 456, 1084, 1117, 1633
BmeRI GACNNNNNGTC 2 cut(s) 166, 247
BmeT110I CYCGRG 1 cut(s) 1055
BmgBI CACGTC 1 cut(s) 1345
BmgT120I GGNCC 7 cut(s) 307, 429, 456, 1084, 1117, 1633, 1806
BmiI GGNNCC 4 cut(s) 1118, 1635, 1683, 1807
BmrFI CCNGG 6 cut(s) 209, 359, 872, 935, 1556, 1694
BmrI ACTGGG 1 cut(s) 1447
BmsI GCATC 5 cut(s) 35, 309, 765, 878, 1041
BmuI ACTGGG 1 cut(s) 1447
BpiI GAAGAC 1 cut(s) 784
BplI GAGNNNNNCTC 6 cut(s) 658, 690, 1532, 1564, 1638, 1670
BpmI CTGGAG 4 cut(s) 261, 268, 725, 885
Bpu10I CCTNAGC 1 cut(s) 1395
Bpu1102I GCTNAGC 1 cut(s) 665
Bpu14I TTCGAA 3 cut(s) 981, 1065, 1853
BpuEI CTTGAG 3 cut(s) 362, 1400, 1640
BpuMI CCSGG 2 cut(s) 872, 1694
Bsa29I ATCGAT 1 cut(s) 623
BsaBI GATNNNNATC 1 cut(s) 25
BsaHI GRCGYC 4 cut(s) 162, 390, 1220, 1254
BsaJI CCNNGG 3 cut(s) 486, 990, 1458
BsaWI WCCGGW 2 cut(s) 915, 1044
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bsc4I CCNNNNNNNGG 6 cut(s) 453, 676, 877, 951, 1006, 1112
Bse118I RCCGGY 4 cut(s) 575, 1109, 1475, 1684
Bse1I ACTGG 3 cut(s) 698, 728, 1442
Bse21I CCTNAGG 1 cut(s) 1810
Bse3DI GCAATG 2 cut(s) 336, 1517
Bse8I GATNNNNATC 1 cut(s) 25
BseAI TCCGGA 2 cut(s) 915, 1044
BseBI CCWGG 4 cut(s) 209, 359, 935, 1556
BseCI ATCGAT 1 cut(s) 623
BseDI CCNNGG 3 cut(s) 486, 990, 1458
BseGI GGATG 3 cut(s) 50, 780, 1502
BseJI GATNNNNATC 1 cut(s) 25
BseLI CCNNNNNNNGG 6 cut(s) 453, 676, 877, 951, 1006, 1112
BseMI GCAATG 2 cut(s) 336, 1517
BseMII CTCAG 5 cut(s) 656, 689, 1530, 1758, 1824
BseNI ACTGG 3 cut(s) 698, 728, 1442
BseRI GAGGAG 2 cut(s) 125, 1741
BseX3I CGGCCG 1 cut(s) 993
BseXI GCAGC 4 cut(s) 1057, 1232, 1290, 1598
BseYI CCCAGC 1 cut(s) 1105
BsgI GTGCAG 1 cut(s) 1836
Bsh1236I CGCG 2 cut(s) 290, 1132
Bsh1285I CGRYCG 1 cut(s) 996
BshNI GGYRCC 1 cut(s) 1681
BshVI ATCGAT 1 cut(s) 623
BsiEI CGRYCG 1 cut(s) 996
BsiHKAI GWGCWC 1 cut(s) 1656
BsiHKCI CYCGRG 1 cut(s) 1055
BslFI GGGAC 2 cut(s) 164, 1088
BslI CCNNNNNNNGG 6 cut(s) 453, 676, 877, 951, 1006, 1112
BsmAI GTCTC 6 cut(s) 169, 194, 331, 389, 701, 1641
BsmBI CGTCTC 3 cut(s) 169, 701, 1641
BsmFI GGGAC 2 cut(s) 164, 1088
BsoBI CYCGRG 1 cut(s) 1055
Bsp119I TTCGAA 3 cut(s) 981, 1065, 1853
Bsp1286I GDGCHC 1 cut(s) 1656
Bsp13I TCCGGA 2 cut(s) 915, 1044
Bsp1407I TGTACA 1 cut(s) 1335
Bsp143I GATC 5 cut(s) 20, 600, 609, 1001, 1281
Bsp1720I GCTNAGC 1 cut(s) 665
BspCNI CTCAG 5 cut(s) 657, 688, 1531, 1759, 1823
BspDI ATCGAT 1 cut(s) 623
BspEI TCCGGA 2 cut(s) 915, 1044
BspFNI CGCG 2 cut(s) 290, 1132
BspHI TCATGA 1 cut(s) 1140
BspLI GGNNCC 4 cut(s) 1118, 1635, 1683, 1807
BspPI GGATC 1 cut(s) 1289
BspQI GCTCTTC 1 cut(s) 421
BspT104I TTCGAA 3 cut(s) 981, 1065, 1853
BspT107I GGYRCC 1 cut(s) 1681
BsrBI CCGCTC 1 cut(s) 414
BsrDI GCAATG 2 cut(s) 336, 1517
BsrFI RCCGGY 4 cut(s) 575, 1109, 1475, 1684
BsrGI TGTACA 1 cut(s) 1335
BsrI ACTGG 3 cut(s) 698, 728, 1442
BssAI RCCGGY 4 cut(s) 575, 1109, 1475, 1684
BssECI CCNNGG 3 cut(s) 486, 990, 1458
BssMI GATC 5 cut(s) 20, 600, 609, 1001, 1281
BssNI GRCGYC 4 cut(s) 162, 390, 1220, 1254
BssSI CACGAG 1 cut(s) 1451
BssT1I CCWWGG 1 cut(s) 1458
Bst2BI CACGAG 1 cut(s) 1451
Bst2UI CCWGG 4 cut(s) 209, 359, 935, 1556
Bst4CI ACNGT 6 cut(s) 249, 400, 563, 642, 861, 1322
Bst6I CTCTTC 5 cut(s) 160, 197, 329, 421, 764
BstACI GRCGYC 4 cut(s) 162, 390, 1220, 1254
BstAUI TGTACA 1 cut(s) 1335
BstBI TTCGAA 3 cut(s) 981, 1065, 1853
BstC8I GCNNGC 4 cut(s) 577, 1448, 1477, 1686
BstDEI CTNAG 6 cut(s) 665, 675, 1395, 1539, 1767, 1810
BstENI CCTNNNNNAGG 1 cut(s) 674
BstF5I GGATG 3 cut(s) 50, 780, 1502
BstFNI CGCG 2 cut(s) 290, 1132
BstHHI GCGC 2 cut(s) 290, 1491
BstKTI GATC 5 cut(s) 23, 603, 612, 1004, 1284
BstMAI GTCTC 6 cut(s) 169, 194, 331, 389, 701, 1641
BstMBI GATC 5 cut(s) 20, 600, 609, 1001, 1281
BstMCI CGRYCG 1 cut(s) 996
BstMWI GCNNNNNNNGC 3 cut(s) 1106, 1219, 1814
BstNI CCWGG 4 cut(s) 209, 359, 935, 1556
BstSCI CCNGG 6 cut(s) 207, 357, 870, 933, 1554, 1692
BstUI CGCG 2 cut(s) 290, 1132
BstV1I GCAGC 4 cut(s) 1057, 1232, 1290, 1598
BstV2I GAAGAC 1 cut(s) 784
BstX2I RGATCY 1 cut(s) 600
BstYI RGATCY 1 cut(s) 600
BstZI CGGCCG 1 cut(s) 993
Bsu15I ATCGAT 1 cut(s) 623
Bsu36I CCTNAGG 1 cut(s) 1810
BsuTUI ATCGAT 1 cut(s) 623
BtgZI GCGATG 2 cut(s) 18, 538
BtrI CACGTC 1 cut(s) 1345
BtsCI GGATG 3 cut(s) 50, 780, 1502
BtsIMutI CAGTG 2 cut(s) 405, 857
Cac8I GCNNGC 4 cut(s) 577, 1448, 1477, 1686
CciI TCATGA 1 cut(s) 1140
CfoI GCGC 2 cut(s) 290, 1491
Cfr10I RCCGGY 4 cut(s) 575, 1109, 1475, 1684
Cfr13I GGNCC 7 cut(s) 307, 429, 456, 1084, 1117, 1633, 1806
ClaI ATCGAT 1 cut(s) 623
CseI GACGC 5 cut(s) 223, 398, 583, 1219, 1228
CsiI ACCWGGT 1 cut(s) 357
Csp6I GTAC 7 cut(s) 643, 721, 931, 1277, 1336, 1420, 1603
CviAII CATG 5 cut(s) 256, 853, 1141, 1492, 1620
CviQI GTAC 7 cut(s) 643, 721, 931, 1277, 1336, 1420, 1603
DdeI CTNAG 6 cut(s) 665, 675, 1395, 1539, 1767, 1810
DpnI GATC 5 cut(s) 22, 602, 611, 1003, 1283
DpnII GATC 5 cut(s) 20, 600, 609, 1001, 1281
DrdI GACNNNNNNGTC 3 cut(s) 403, 1439, 1751
DriI GACNNNNNGTC 2 cut(s) 166, 247
DseDI GACNNNNNNGTC 3 cut(s) 403, 1439, 1751
EaeI YGGCCR 5 cut(s) 252, 882, 953, 993, 1368
EagI CGGCCG 1 cut(s) 993
Eam1104I CTCTTC 5 cut(s) 160, 197, 329, 421, 764
Eam1105I GACNNNNNGTC 2 cut(s) 166, 247
EarI CTCTTC 5 cut(s) 160, 197, 329, 421, 764
EciI GGCGGA 2 cut(s) 562, 787
Ecl136II GAGCTC 1 cut(s) 1654
EclXI CGGCCG 1 cut(s) 993
Eco130I CCWWGG 1 cut(s) 1458
Eco24I GRGCYC 1 cut(s) 1656
Eco32I GATATC 1 cut(s) 570
Eco47I GGWCC 4 cut(s) 456, 1084, 1117, 1633
Eco52I CGGCCG 1 cut(s) 993
Eco53kI GAGCTC 1 cut(s) 1654
Eco57I CTGAAG 2 cut(s) 811, 1199
Eco81I CCTNAGG 1 cut(s) 1810
Eco88I CYCGRG 1 cut(s) 1055
EcoICRI GAGCTC 1 cut(s) 1654
EcoNI CCTNNNNNAGG 1 cut(s) 674
EcoO109I RGGNCCY 2 cut(s) 429, 1806
EcoRI GAATTC 1 cut(s) 1855
EcoRII CCWGG 4 cut(s) 207, 357, 933, 1554
EcoRV GATATC 1 cut(s) 570
EcoT14I CCWWGG 1 cut(s) 1458
EcoT38I GRGCYC 1 cut(s) 1656
ErhI CCWWGG 1 cut(s) 1458
Esp3I CGTCTC 3 cut(s) 169, 701, 1641
FaeI CATG 5 cut(s) 259, 856, 1144, 1495, 1623
FalI AAGNNNNNCTT 4 cut(s) 805, 837, 1553, 1585
FaqI GGGAC 2 cut(s) 164, 1088
FatI CATG 5 cut(s) 255, 852, 1140, 1491, 1619
FauI CCCGC 1 cut(s) 1212
FblI GTMKAC 1 cut(s) 497
Fnu4HI GCNGC 6 cut(s) 412, 849, 1071, 1246, 1304, 1587
FokI GGATG 3 cut(s) 37, 787, 1509
FriOI GRGCYC 1 cut(s) 1656
Fsp4HI GCNGC 6 cut(s) 412, 849, 1071, 1246, 1304, 1587
FspBI CTAG 2 cut(s) 386, 408
GlaI GCGC 2 cut(s) 289, 1490
GluI GCNGC 6 cut(s) 412, 849, 1071, 1246, 1304, 1587
GsaI CCCAGC 1 cut(s) 1109
GsuI CTGGAG 4 cut(s) 261, 268, 725, 885
HgaI GACGC 5 cut(s) 223, 398, 583, 1219, 1228
HhaI GCGC 2 cut(s) 290, 1491
Hin1I GRCGYC 4 cut(s) 162, 390, 1220, 1254
Hin1II CATG 5 cut(s) 259, 856, 1144, 1495, 1623
Hin6I GCGC 2 cut(s) 288, 1489
HinP1I GCGC 2 cut(s) 288, 1489
HincII GTYRAC 2 cut(s) 498, 1015
HindII GTYRAC 2 cut(s) 498, 1015
HpaI GTTAAC 1 cut(s) 1015
HphI GGTGA 3 cut(s) 69, 175, 1144
Hpy166II GTNNAC 5 cut(s) 498, 631, 1015, 1120, 1744
Hpy8I GTNNAC 5 cut(s) 498, 631, 1015, 1120, 1744
Hpy99I CGWCG 3 cut(s) 164, 1259, 1322
HpyAV CCTTC 7 cut(s) 48, 81, 340, 503, 629, 1075, 1165
HpyCH4III ACNGT 6 cut(s) 249, 400, 563, 642, 861, 1322
HpyCH4IV ACGT 4 cut(s) 162, 699, 1254, 1344
HpyCH4V TGCA 6 cut(s) 259, 322, 891, 1311, 1381, 1817
HpyF10VI GCNNNNNNNGC 3 cut(s) 1106, 1219, 1814
HpyF3I CTNAG 6 cut(s) 665, 675, 1395, 1539, 1767, 1810
HpySE526I ACGT 4 cut(s) 162, 699, 1254, 1344
Hsp92I GRCGYC 4 cut(s) 162, 390, 1220, 1254
Hsp92II CATG 5 cut(s) 259, 856, 1144, 1495, 1623
HspAI GCGC 2 cut(s) 288, 1489
Kpn2I TCCGGA 2 cut(s) 915, 1044
KroI GCCGGC 3 cut(s) 575, 1475, 1684
KroNI GCCGGC 3 cut(s) 577, 1477, 1686
KspAI GTTAAC 1 cut(s) 1015
Kzo9I GATC 5 cut(s) 20, 600, 609, 1001, 1281
LguI GCTCTTC 1 cut(s) 421
LmnI GCTCC 3 cut(s) 514, 1500, 1821
Lsp1109I GCAGC 4 cut(s) 1057, 1232, 1290, 1598
LweI GCATC 5 cut(s) 35, 309, 765, 878, 1041
MabI ACCWGGT 1 cut(s) 357
MaeI CTAG 2 cut(s) 386, 408
MaeII ACGT 4 cut(s) 162, 699, 1254, 1344
MaeIII GTNAC 3 cut(s) 235, 1403, 1627
MalI GATC 5 cut(s) 22, 602, 611, 1003, 1283
MbiI CCGCTC 1 cut(s) 414
MboI GATC 5 cut(s) 20, 600, 609, 1001, 1281
MboII GAAGA 9 cut(s) 147, 184, 346, 408, 697, 751, 784, 919, 1684
MflI RGATCY 1 cut(s) 600
MhlI GDGCHC 1 cut(s) 1656
MlsI TGGCCA 2 cut(s) 884, 1370
MluI ACGCGT 1 cut(s) 1130
MluNI TGGCCA 2 cut(s) 884, 1370
MmeI TCCRAC 6 cut(s) 120, 183, 1434, 1556, 1575, 1770
Mox20I TGGCCA 2 cut(s) 884, 1370
MroI TCCGGA 2 cut(s) 915, 1044
MroNI GCCGGC 3 cut(s) 575, 1475, 1684
MroXI GAANNNNTTC 3 cut(s) 11, 911, 1568
MscI TGGCCA 2 cut(s) 884, 1370
MseI TTAA 3 cut(s) 270, 729, 1014
Msp20I TGGCCA 2 cut(s) 884, 1370
MspA1I CMGCKG 2 cut(s) 1100, 1207
MspR9I CCNGG 6 cut(s) 209, 359, 872, 935, 1556, 1694
MvaI CCWGG 4 cut(s) 209, 359, 935, 1556
MvnI CGCG 2 cut(s) 290, 1132
MwoI GCNNNNNNNGC 3 cut(s) 1106, 1219, 1814
NaeI GCCGGC 3 cut(s) 577, 1477, 1686
NciI CCSGG 2 cut(s) 872, 1694
NdeII GATC 5 cut(s) 20, 600, 609, 1001, 1281
NgoMIV GCCGGC 3 cut(s) 575, 1475, 1684
NlaIII CATG 5 cut(s) 259, 856, 1144, 1495, 1623
NlaIV GGNNCC 4 cut(s) 1118, 1635, 1683, 1807
NmeAIII GCCGAG 4 cut(s) 418, 971, 1011, 1407
NmuCI GTSAC 2 cut(s) 235, 1627
NspV TTCGAA 3 cut(s) 981, 1065, 1853
PaeR7I CTCGAG 1 cut(s) 1055
PagI TCATGA 1 cut(s) 1140
PciSI GCTCTTC 1 cut(s) 421
PcsI WCGNNNNNNNCGW 4 cut(s) 1038, 1062, 1326, 1449
PdiI GCCGGC 3 cut(s) 577, 1477, 1686
PdmI GAANNNNTTC 3 cut(s) 11, 911, 1568
PfeI GAWTC 5 cut(s) 382, 422, 476, 482, 983
PflFI GACNNNGTC 3 cut(s) 400, 454, 788
PflMI CCANNNNNTGG 1 cut(s) 1112
PfoI TCCNGGA 1 cut(s) 870
PkrI GCNGC 6 cut(s) 413, 850, 1072, 1247, 1305, 1588
Psp124BI GAGCTC 1 cut(s) 1656
Psp1406I AACGTT 1 cut(s) 699
Psp6I CCWGG 4 cut(s) 207, 357, 933, 1554
PspFI CCCAGC 1 cut(s) 1105
PspGI CCWGG 4 cut(s) 207, 357, 933, 1554
PspN4I GGNNCC 4 cut(s) 1118, 1635, 1683, 1807
PspPI GGNCC 7 cut(s) 307, 429, 456, 1084, 1117, 1633, 1806
PspXI VCTCGAGB 1 cut(s) 1055
PsuI RGATCY 1 cut(s) 600
PsyI GACNNNGTC 3 cut(s) 400, 454, 788
RsaI GTAC 7 cut(s) 644, 722, 932, 1278, 1337, 1421, 1604
RsaNI GTAC 7 cut(s) 643, 721, 931, 1277, 1336, 1420, 1603
SacI GAGCTC 1 cut(s) 1656
SalI GTCGAC 1 cut(s) 496
SapI GCTCTTC 1 cut(s) 421
SaqAI TTAA 3 cut(s) 270, 729, 1014
SatI GCNGC 6 cut(s) 412, 849, 1071, 1246, 1304, 1587
Sau3AI GATC 5 cut(s) 20, 600, 609, 1001, 1281
Sau96I GGNCC 7 cut(s) 307, 429, 456, 1084, 1117, 1633, 1806
ScaI AGTACT 2 cut(s) 722, 1421
ScrFI CCNGG 6 cut(s) 209, 359, 872, 935, 1556, 1694
SduI GDGCHC 1 cut(s) 1656
SexAI ACCWGGT 1 cut(s) 357
SfaNI GCATC 5 cut(s) 35, 309, 765, 878, 1041
Sfr274I CTCGAG 1 cut(s) 1055
SfuI TTCGAA 3 cut(s) 981, 1065, 1853
SinI GGWCC 4 cut(s) 456, 1084, 1117, 1633
SlaI CTCGAG 1 cut(s) 1055
SmlI CTYRAG 4 cut(s) 341, 1055, 1415, 1655
SmoI CTYRAG 4 cut(s) 341, 1055, 1415, 1655
SspMI CTAG 2 cut(s) 386, 408
SstI GAGCTC 1 cut(s) 1656
StyD4I CCNGG 6 cut(s) 207, 357, 870, 933, 1554, 1692
StyI CCWWGG 1 cut(s) 1458
TaaI ACNGT 6 cut(s) 249, 400, 563, 642, 861, 1322
TaiI ACGT 4 cut(s) 165, 702, 1257, 1347
TaqII GACCGA 2 cut(s) 444, 1343
TatI WGTACW 3 cut(s) 720, 1335, 1419
TauI GCSGC 2 cut(s) 414, 851
TfiI GAWTC 5 cut(s) 382, 422, 476, 482, 983
Tru1I TTAA 3 cut(s) 270, 729, 1014
Tru9I TTAA 3 cut(s) 270, 729, 1014
TscAI CASTG 2 cut(s) 405, 864
TseFI GTSAC 2 cut(s) 235, 1627
TseI GCWGC 4 cut(s) 1070, 1245, 1303, 1586
Tsp45I GTSAC 2 cut(s) 235, 1627
TspDTI ATGAA 3 cut(s) 347, 1157, 1506
TspGWI ACGGA 4 cut(s) 254, 1178, 1294, 1646
TspRI CASTG 2 cut(s) 405, 864
Tth111I GACNNNGTC 3 cut(s) 400, 454, 788
Van91I CCANNNNNTGG 1 cut(s) 1112
VpaK11BI GGWCC 4 cut(s) 456, 1084, 1117, 1633
XagI CCTNNNNNAGG 1 cut(s) 674
XapI RAATTY 3 cut(s) 350, 1771, 1855
XbaI TCTAGA 1 cut(s) 385
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XhoI CTCGAG 1 cut(s) 1055
XmiI GTMKAC 1 cut(s) 497
XmnI GAANNNNTTC 3 cut(s) 11, 911, 1568
XspI CTAG 2 cut(s) 386, 408
ZraI GACGTC 2 cut(s) 163, 1255
ZrmI AGTACT 2 cut(s) 722, 1421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.