Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009637

Physical Location & Seq

Genomic Coordinates Forward (+)

4377097 .. 4379575

Gene Structure 2479 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G13440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCTGACCAAGGATTAGAAGAGAGTAATCCAATGGACCTTAGCAAACATCCTTCAGGGATTGTTCCTACTCCTCATAGTCAAGTCATTTACAAGATGCCACCAAGAATTGCTGCTATCCGTCTTGTAAGCTCGCATCGTGAGGTCTATGAACCATGTGATGATTCATTTGCGCTAGTTGATGCATTACTCGCTGATCGCACCAACCTTATAGAGCACAACCCTAAGATTTGTATGGAGATTGGATGCGGAAGCGGATATGTCATAACTTCACTTATACTTCTTCTTCAAAACGAAGTTCCTGGTGTTCATTATCTCGCCATTGACACTAACCCGATAGCTACAAGAGTGACAAAAGAAACTCTAGAAGCACATGGAGTTAATGCTGATGTTATCTGCGCAGATTTAGCTACTGGTCTAGAGAAGAGACTTGCTGGCTCAGTCGACGTGATTGTGGTGAATCCGCCTTATGTGCCAACACCTGAATATGAAGTTGGAATGGAAGGTATTGCCTCTGCTTGGGCAGGAGGGGAAAATGGCCGGACAGTCATCGATAAAATCTTGCCTGTGGTTGATCTTTTGCTATCAGAGAAAGGATGGTTCTACTTAGTGACATTAACTTCAAATTTCCCAGCAGAGATTTGTCTGATGATGAGAAAGAAAGGTTATGCTTCGAGAATCGTAGTTCAGAGATCAACAGAAGAGGAGAATCTCGTTATCCTAAAGTTCTGGAGAGACAAGGATGAGGAGAGCCAGGACAAAGAGACATCATCATCATCGTTTGTTTCGCAGTTTTCGAAATCCTTATCTTCGCTTATGGAGAAACAATGGCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS

Protein Analysis

278

Amino Acids

30.76

Weight (kDa)

5.0

Isoelectric Point (pI)

37.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTS	PF05175	75 - 168	2.6e-09	Methyltransferase small domain
Methyltransf_25	PF13649	79 - 167	3.7e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13440 AT3G13440 AT3G13440
fragaria_vesca	FvH4_3g13390 FvH4_3g13390
malus_domestica	MD05G1242200.v1.1
prunus_persica	Prupe.4G121300_v2.0.a1 Prupe.4G121300_v2.0.a1 Prupe.4G121300_v2.0.a1
pyrus_communis	pycom05g21870
rosa_chinensis	RchiOBHm_Chr5g0022101
rosa_laevigata	RLG00000032644
rosa_multiflora	Rmu_co8399787.1_g000001 Rmu_sc0026188.1_g000002 Rmu_sc0028874.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056830
rosa_rugosa	Rorug05G0071300 Rorug05G0071400
rosa_samantha	Rh5BG158500 Rh5CG172900 Rh5DG158700
rosa_wichuraiana	Rw5G014210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	400
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	3 cut(s)	249, 255, 464
AcoI	YGGCCR	1 cut(s)	538
AcsI	RAATTY	1 cut(s)	625
AcuI	CTGAAG	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	519
AgsI	TTSAA	2 cut(s)	290, 624
AjiI	CACGTC	1 cut(s)	448
AjnI	CCWGG	2 cut(s)	301, 753
AjuI	GAANNNNNNNTTGG	2 cut(s)	477, 509
AluBI	AGCT	3 cut(s)	132, 341, 410
AluI	AGCT	3 cut(s)	132, 341, 410
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	3 cut(s)	421, 729, 758
AoxI	GGCC	1 cut(s)	538
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	1 cut(s)	625
AspLEI	GCGC	3 cut(s)	175, 401, 834
AspS9I	GGNCC	1 cut(s)	37
AsuHPI	GGTGA	1 cut(s)	469
AsuII	TTCGAA	1 cut(s)	797
AvaII	GGWCC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	1 cut(s)	591
BciT130I	CCWGG	2 cut(s)	303, 755
BcoDI	GTCTC	3 cut(s)	421, 729, 758
BfaI	CTAG	3 cut(s)	176, 365, 419
BfoI	RGCGCY	1 cut(s)	835
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
Bme1390I	CCNGG	2 cut(s)	303, 755
Bme18I	GGWCC	1 cut(s)	37
BmgBI	CACGTC	1 cut(s)	448
BmgT120I	GGNCC	1 cut(s)	37
BmrFI	CCNGG	2 cut(s)	303, 755
BmsI	GCATC	4 cut(s)	87, 145, 172, 236
BpmI	CTGGAG	1 cut(s)	751
Bpu10I	CCTNAGC	1 cut(s)	41
Bpu14I	TTCGAA	1 cut(s)	797
Bsa29I	ATCGAT	1 cut(s)	552
BsaJI	CCNNGG	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	1 cut(s)	519
Bse1I	ACTGG	1 cut(s)	418
BseBI	CCWGG	2 cut(s)	303, 755
BseCI	ATCGAT	1 cut(s)	552
BseDI	CCNNGG	1 cut(s)	10
BseGI	GGATG	4 cut(s)	49, 251, 602, 748
BseLI	CCNNNNNNNGG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	453
BseNI	ACTGG	1 cut(s)	418
BseRI	GAGGAG	3 cut(s)	63, 719, 761
BseXI	GCAGC	1 cut(s)	100
BseYI	CCCAGC	1 cut(s)	631
BshFI	GGCC	1 cut(s)	540
BshVI	ATCGAT	1 cut(s)	552
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	541
BslI	CCNNNNNNNGG	1 cut(s)	519
BsmAI	GTCTC	3 cut(s)	421, 729, 758
BsnI	GGCC	1 cut(s)	540
Bsp119I	TTCGAA	1 cut(s)	797
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	196, 574, 692
BspACI	CCGC	3 cut(s)	249, 255, 464
BspANI	GGCC	1 cut(s)	540
BspCNI	CTCAG	1 cut(s)	452
BspDI	ATCGAT	1 cut(s)	552
BspT104I	TTCGAA	1 cut(s)	797
BsrI	ACTGG	1 cut(s)	418
BssECI	CCNNGG	1 cut(s)	10
BssMI	GATC	3 cut(s)	196, 574, 692
BssT1I	CCWWGG	1 cut(s)	10
Bst2UI	CCWGG	2 cut(s)	303, 755
Bst4CI	ACNGT	1 cut(s)	547
Bst6I	CTCTTC	3 cut(s)	15, 419, 696
BstBI	TTCGAA	1 cut(s)	797
BstC8I	GCNNGC	2 cut(s)	134, 436
BstDEI	CTNAG	4 cut(s)	41, 225, 439, 607
BstF5I	GGATG	4 cut(s)	49, 251, 602, 748
BstH2I	RGCGCY	1 cut(s)	835
BstHHI	GCGC	3 cut(s)	175, 401, 834
BstKTI	GATC	3 cut(s)	199, 577, 695
BstMAI	GTCTC	3 cut(s)	421, 729, 758
BstMBI	GATC	3 cut(s)	196, 574, 692
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 407, 472
BstNI	CCWGG	2 cut(s)	303, 755
BstSCI	CCNGG	2 cut(s)	301, 753
BstV1I	GCAGC	1 cut(s)	100
Bsu15I	ATCGAT	1 cut(s)	552
BsuRI	GGCC	1 cut(s)	540
BsuTUI	ATCGAT	1 cut(s)	552
BtrI	CACGTC	1 cut(s)	448
BtsCI	GGATG	4 cut(s)	49, 251, 602, 748
Cac8I	GCNNGC	2 cut(s)	134, 436
CfoI	GCGC	3 cut(s)	175, 401, 834
Cfr13I	GGNCC	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	552
CviAII	CATG	2 cut(s)	156, 374
CviJI	RGCY	7 cut(s)	5, 132, 341, 410, 438, 540, 753
CviKI_1	RGCY	7 cut(s)	5, 132, 341, 410, 438, 540, 753
DdeI	CTNAG	4 cut(s)	41, 225, 439, 607
DpnI	GATC	3 cut(s)	198, 576, 694
DpnII	GATC	3 cut(s)	196, 574, 692
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	3 cut(s)	15, 419, 696
EarI	CTCTTC	3 cut(s)	15, 419, 696
EciI	GGCGGA	1 cut(s)	453
Eco130I	CCWWGG	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	301, 753
EcoT14I	CCWWGG	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	187
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	2 cut(s)	159, 377
FatI	CATG	2 cut(s)	155, 373
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	4 cut(s)	36, 258, 609, 755
Fsp4HI	GCNGC	1 cut(s)	114
FspBI	CTAG	3 cut(s)	176, 365, 419
FspI	TGCGCA	1 cut(s)	400
GlaI	GCGC	3 cut(s)	174, 400, 833
GluI	GCNGC	1 cut(s)	114
GsaI	CCCAGC	1 cut(s)	635
GsuI	CTGGAG	1 cut(s)	751
HaeII	RGCGCY	1 cut(s)	835
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	1 cut(s)	541
HhaI	GCGC	3 cut(s)	175, 401, 834
Hin1II	CATG	2 cut(s)	159, 377
Hin6I	GCGC	3 cut(s)	173, 399, 832
HinP1I	GCGC	3 cut(s)	173, 399, 832
HincII	GTYRAC	1 cut(s)	445
HindII	GTYRAC	1 cut(s)	445
HinfI	GANTC	4 cut(s)	164, 460, 678, 709
HpaII	CCGG	1 cut(s)	541
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	3 cut(s)	589, 648, 690
Hpy188III	TCNNGA	5 cut(s)	140, 365, 419, 675, 730
Hpy8I	GTNNAC	1 cut(s)	445
Hpy99I	CGWCG	1 cut(s)	449
HpyAV	CCTTC	2 cut(s)	63, 497
HpyCH4III	ACNGT	1 cut(s)	547
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	1 cut(s)	185
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 407, 472
HpyF3I	CTNAG	4 cut(s)	41, 225, 439, 607
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	2 cut(s)	159, 377
HspAI	GCGC	3 cut(s)	173, 399, 832
Kzo9I	GATC	3 cut(s)	196, 574, 692
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	4 cut(s)	87, 145, 172, 236
MaeI	CTAG	3 cut(s)	176, 365, 419
MaeII	ACGT	1 cut(s)	447
MaeIII	GTNAC	2 cut(s)	349, 610
MalI	GATC	3 cut(s)	198, 576, 694
MboI	GATC	3 cut(s)	196, 574, 692
MboII	GAAGA	6 cut(s)	32, 275, 278, 436, 713, 801
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	108, 625
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	6 cut(s)	84, 136, 521, 523, 697, 739
Mph1103I	ATGCAT	1 cut(s)	187
MseI	TTAA	2 cut(s)	381, 617
MspI	CCGG	1 cut(s)	541
MspR9I	CCNGG	2 cut(s)	303, 755
MvaI	CCWGG	2 cut(s)	303, 755
MwoI	GCNNNNNNNGC	3 cut(s)	191, 407, 472
NdeII	GATC	3 cut(s)	196, 574, 692
NlaIII	CATG	2 cut(s)	159, 377
NmuCI	GTSAC	2 cut(s)	349, 610
NsbI	TGCGCA	1 cut(s)	400
NsiI	ATGCAT	1 cut(s)	187
NspV	TTCGAA	1 cut(s)	797
PcsI	WCGNNNNNNNCGW	1 cut(s)	794
PfeI	GAWTC	4 cut(s)	164, 460, 678, 709
PkrI	GCNGC	1 cut(s)	115
Psp6I	CCWGG	2 cut(s)	301, 753
PspFI	CCCAGC	1 cut(s)	631
PspGI	CCWGG	2 cut(s)	301, 753
PspPI	GGNCC	1 cut(s)	37
SalI	GTCGAC	1 cut(s)	443
SaqAI	TTAA	2 cut(s)	381, 617
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	3 cut(s)	196, 574, 692
Sau96I	GGNCC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	303, 755
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	4 cut(s)	87, 145, 172, 236
SfuI	TTCGAA	1 cut(s)	797
SinI	GGWCC	1 cut(s)	37
Sse9I	AATT	2 cut(s)	108, 625
SsiI	CCGC	3 cut(s)	249, 255, 464
SspMI	CTAG	3 cut(s)	176, 365, 419
StyD4I	CCNGG	2 cut(s)	301, 753
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	1 cut(s)	547
TaiI	ACGT	1 cut(s)	450
TaqI	TCGA	4 cut(s)	444, 552, 674, 797
TasI	AATT	2 cut(s)	108, 625
TfiI	GAWTC	4 cut(s)	164, 460, 678, 709
Tru1I	TTAA	2 cut(s)	381, 617
Tru9I	TTAA	2 cut(s)	381, 617
TseFI	GTSAC	2 cut(s)	349, 610
TseI	GCWGC	1 cut(s)	113
Tsp45I	GTSAC	2 cut(s)	349, 610
TspDTI	ATGAA	4 cut(s)	156, 165, 299, 504
TspGWI	ACGGA	1 cut(s)	110
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	625
XbaI	TCTAGA	2 cut(s)	364, 418
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	3 cut(s)	176, 365, 419
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.