Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0009637

Physical Location & Seq

Genomic Coordinates Reverse (-)

6572183 .. 6574171

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G121300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTCCTCTAGAATCGCCCAAATCCGCCTTGTAAGCTCTCATCCAGAGGTTTATGAACCATGTGATGATTCATTTGCTCTAGTAGATGCTCTTTTAGCGGATCGAAAGAACCTGTTAGAGCATCAACCAACATTGTGCCTGGAACTGGGCTGTGGTAGTGGCTATGTAATTACTTCTCTAGCTCTTATTGTTGGCCAGGAGGCGCACTATATTGCAACTGATATCAACCCCCATGCAGTGAGGGTGGCTCGTGAGACATTAGAAGCACATGGGGTTCATGCAGAGTTGATAACCACTAACATTGCATCAGGACTCGAGAAGCGTCTAGCAGGATTGGTTGATGTTATAGTTGTGAATCCGCCTTATGTGCCGACCCCTGAAGATGAAGTGGGTCATGAAGGAATTGCCTCTGCATGGGCCGGAGGGGAGAATGGCCGGAGCGTGATTGATAAGATACTGCCTGTTGCTGACAATCTTTTGTCGGAGAAGGGCTGGTTGTACATGGTCACTCTTACAGAAAACAATCCCTCAGAGATATGCCTTCAAATGAAAGAAAAGGGCTATGCTTCCAGAATCATTGTCCAGAGATTGACAGAAGAAGAAAATCTACAAATCATCAAGTTCTGGCGGGATTTTGATTCTCAACTGGAGGCAAAGGGAATGGTAGCAAATAAAACAGTTTCTTCGAGGGTCATGGAGTCTTTGCTCTCTCAGTTCCATATAATGCCGTTTCTTAGAGGCAGTAACAAACAACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS

Protein Analysis

253

Amino Acids

27.84

Weight (kDa)

5.19

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13440 AT3G13440 AT3G13440
fragaria_vesca	FvH4_3g13390 FvH4_3g13390
malus_domestica	MD05G1242200.v1.1
prunus_persica	Prupe.4G121300_v2.0.a1 Prupe.4G121300_v2.0.a1 Prupe.4G121300_v2.0.a1
pyrus_communis	pycom05g21870
rosa_chinensis	RchiOBHm_Chr5g0022101
rosa_laevigata	RLG00000032644
rosa_multiflora	Rmu_co8399787.1_g000001 Rmu_sc0026188.1_g000002 Rmu_sc0028874.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056830
rosa_rugosa	Rorug05G0071300 Rorug05G0071400
rosa_samantha	Rh5BG158500 Rh5CG172900 Rh5DG158700
rosa_wichuraiana	Rw5G014210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	25, 98, 359, 628
AclWI	GGATC	1 cut(s)	108
AcoI	YGGCCR	2 cut(s)	193, 433
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	145, 414
AgsI	TTSAA	1 cut(s)	545
AjnI	CCWGG	2 cut(s)	138, 195
AluBI	AGCT	2 cut(s)	36, 182
AluI	AGCT	2 cut(s)	36, 182
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	108
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	3 cut(s)	193, 417, 433
AspLEI	GCGC	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	417
AvaI	CYCGRG	1 cut(s)	314
BalI	TGGCCA	1 cut(s)	195
BarI	GAAGNNNNNNTAC	2 cut(s)	591, 623
BauI	CACGAG	1 cut(s)	249
BceAI	ACGGC	1 cut(s)	712
BciT130I	CCWGG	2 cut(s)	140, 197
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	4 cut(s)	9, 80, 179, 326
Bme1390I	CCNGG	2 cut(s)	140, 197
BmeT110I	CYCGRG	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	417
BmrFI	CCNGG	2 cut(s)	140, 197
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	3 cut(s)	76, 130, 314
BmuI	ACTGGG	1 cut(s)	155
BplI	GAGNNNNNCTC	2 cut(s)	232, 264
BpmI	CTGGAG	1 cut(s)	668
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 414
Bse1I	ACTGG	2 cut(s)	150, 651
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	140, 197
BseGI	GGATG	1 cut(s)	40
BseLI	CCNNNNNNNGG	2 cut(s)	145, 414
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	2 cut(s)	543, 725
BseNI	ACTGG	2 cut(s)	150, 651
BshFI	GGCC	3 cut(s)	195, 419, 435
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	420, 436
BslI	CCNNNNNNNGG	2 cut(s)	145, 414
BsmAI	GTCTC	1 cut(s)	248
BsnI	GGCC	3 cut(s)	195, 419, 435
BsoBI	CYCGRG	1 cut(s)	314
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	1 cut(s)	100
BspACI	CCGC	4 cut(s)	25, 98, 359, 628
BspANI	GGCC	3 cut(s)	195, 419, 435
BspCNI	CTCAG	2 cut(s)	542, 724
BspHI	TCATGA	1 cut(s)	394
BspPI	GGATC	1 cut(s)	108
BsrDI	GCAATG	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	150, 651
BssMI	GATC	1 cut(s)	100
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	140, 197
Bst4CI	ACNGT	2 cut(s)	679, 756
BstAUI	TGTACA	1 cut(s)	498
BstDEI	CTNAG	3 cut(s)	529, 711, 734
BstF5I	GGATG	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	205
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	100
BstMWI	GCNNNNNNNGC	3 cut(s)	33, 95, 367
BstNI	CCWGG	2 cut(s)	140, 197
BstSCI	CCNGG	2 cut(s)	138, 195
BsuRI	GGCC	3 cut(s)	195, 419, 435
BtsCI	GGATG	1 cut(s)	40
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
CciI	TCATGA	1 cut(s)	394
CfoI	GCGC	1 cut(s)	205
Cfr13I	GGNCC	1 cut(s)	417
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	499
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviAII	CATG	8 cut(s)	60, 233, 269, 278, 395, 414, 502, 694
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	3 cut(s)	529, 711, 734
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
EaeI	YGGCCR	2 cut(s)	193, 433
EciI	GGCGGA	2 cut(s)	14, 348
Eco32I	GATATC	1 cut(s)	223
Eco57I	CTGAAG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	314
EcoRII	CCWGG	2 cut(s)	138, 195
EcoRV	GATATC	1 cut(s)	223
FaeI	CATG	8 cut(s)	63, 236, 272, 281, 398, 417, 505, 697
FatI	CATG	8 cut(s)	59, 232, 268, 277, 394, 413, 501, 693
FauI	CCCGC	1 cut(s)	621
FokI	GGATG	1 cut(s)	27
FspBI	CTAG	4 cut(s)	9, 80, 179, 326
GlaI	GCGC	1 cut(s)	204
GsuI	CTGGAG	1 cut(s)	668
HaeIII	GGCC	3 cut(s)	195, 419, 435
HapII	CCGG	2 cut(s)	420, 436
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	205
Hin1II	CATG	8 cut(s)	63, 236, 272, 281, 398, 417, 505, 697
Hin6I	GCGC	1 cut(s)	203
HinP1I	GCGC	1 cut(s)	203
HinfI	GANTC	7 cut(s)	12, 68, 312, 355, 573, 638, 698
HpaII	CCGG	2 cut(s)	420, 436
Hpy188I	TCNGA	2 cut(s)	484, 532
Hpy188III	TCNNGA	8 cut(s)	9, 44, 251, 309, 316, 395, 570, 583
HpyAV	CCTTC	3 cut(s)	392, 481, 551
HpyCH4III	ACNGT	2 cut(s)	679, 756
HpyCH4V	TGCA	5 cut(s)	215, 236, 281, 305, 413
HpyF10VI	GCNNNNNNNGC	3 cut(s)	33, 95, 367
HpyF3I	CTNAG	3 cut(s)	529, 711, 734
Hsp92II	CATG	8 cut(s)	63, 236, 272, 281, 398, 417, 505, 697
HspAI	GCGC	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	100
LmnI	GCTCC	1 cut(s)	438
LweI	GCATC	3 cut(s)	76, 130, 314
MaeI	CTAG	4 cut(s)	9, 80, 179, 326
MaeIII	GTNAC	2 cut(s)	505, 743
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	4 cut(s)	392, 608, 611, 675
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	2 cut(s)	168, 402
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	2 cut(s)	306, 707
MmeI	TCCRAC	1 cut(s)	462
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	2 cut(s)	420, 436
MspR9I	CCNGG	2 cut(s)	140, 197
MvaI	CCWGG	2 cut(s)	140, 197
MwoI	GCNNNNNNNGC	3 cut(s)	33, 95, 367
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	8 cut(s)	63, 236, 272, 281, 398, 417, 505, 697
NmuCI	GTSAC	1 cut(s)	505
PaeR7I	CTCGAG	1 cut(s)	314
PagI	TCATGA	1 cut(s)	394
PfeI	GAWTC	5 cut(s)	12, 68, 355, 573, 638
PleI	GAGTC	2 cut(s)	306, 706
PpsI	GAGTC	2 cut(s)	306, 706
Psp6I	CCWGG	2 cut(s)	138, 195
PspGI	CCWGG	2 cut(s)	138, 195
PspPI	GGNCC	1 cut(s)	417
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
Sau3AI	GATC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	417
SchI	GAGTC	2 cut(s)	306, 707
ScrFI	CCNGG	2 cut(s)	140, 197
SetI	ASST	4 cut(s)	38, 51, 114, 184
SfaNI	GCATC	3 cut(s)	76, 130, 314
Sfr274I	CTCGAG	1 cut(s)	314
SlaI	CTCGAG	1 cut(s)	314
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	168, 402
SsiI	CCGC	4 cut(s)	25, 98, 359, 628
SspMI	CTAG	4 cut(s)	9, 80, 179, 326
StyD4I	CCNGG	2 cut(s)	138, 195
TaaI	ACNGT	2 cut(s)	679, 756
TaqI	TCGA	3 cut(s)	103, 315, 686
TasI	AATT	2 cut(s)	168, 402
TatI	WGTACW	1 cut(s)	498
TfiI	GAWTC	5 cut(s)	12, 68, 355, 573, 638
TscAI	CASTG	1 cut(s)	243
TseFI	GTSAC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	505
TspDTI	ATGAA	6 cut(s)	60, 69, 266, 399, 411, 563
TspRI	CASTG	1 cut(s)	243
XbaI	TCTAGA	1 cut(s)	8
XhoI	CTCGAG	1 cut(s)	314
XspI	CTAG	4 cut(s)	9, 80, 179, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.