Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009637

Physical Location & Seq

Genomic Coordinates Forward (+)

6123731 .. 6124321

Gene Structure 591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0071300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGTCCATCAACGTAAAGAACAAGGAAACCTTGTTCGACTCTACCTCTGTAATTCCGTATTCTTCTTCTCTTCTTTCCCTACACCTCTCCAACAAACCCAGAACCCTTTATATATACCATCACGCCAGCACCCTTTGCACCACCTACCGACAACTCGATCTCTTTCCTTACATCACCACCTTCTCCATTCCAAAGCCAAACTTGAACGAAGAAAATCAACGTACGGTCACCATGATGATGCGTCACTGCCTTCTCCTCCTCCTCCTCTCCCCTTTTGTCGCTGCTGACCAACTCCGGCGACAGTTCGACGGTGGTTGGGGCCCCATCGAAAATATCAACAAACCCTATCTGAAAGAGATCGCGGAGTTTGCAGTTTCTGAAATCAGCAAACAATCCCACAAGAAGTTGGTGTTCCAGAGCGTTCTCAAGGGTGAGAGTCAAGTGGTAGGAGGAATTAATTATCTTCTTCACATTAGGGTCAAGGATGAGTCGTCGCCCTATTCCCCTACTACTTTCATATATAAATGTTCTCTCTTCGATGGTATCTTAGAAGAGGGGATGAAATTTGAGGGTTGTGAGATCCTTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS

Protein Analysis

196

Amino Acids

22.37

Weight (kDa)

7.69

Isoelectric Point (pI)

59.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cystatin	PF00031	104 - 165	2.6e-08	Cystatin domain
SQAPI	PF16845	109 - 165	1.3e-16	Aspartic acid proteinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13440 AT3G13440 AT3G13440
fragaria_vesca	FvH4_3g13390 FvH4_3g13390
malus_domestica	MD05G1242200.v1.1
prunus_persica	Prupe.4G121300_v2.0.a1 Prupe.4G121300_v2.0.a1 Prupe.4G121300_v2.0.a1
pyrus_communis	pycom05g21870
rosa_chinensis	RchiOBHm_Chr5g0022101
rosa_laevigata	RLG00000032644
rosa_multiflora	Rmu_co8399787.1_g000001 Rmu_sc0026188.1_g000002 Rmu_sc0028874.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056830
rosa_rugosa	Rorug05G0071300 Rorug05G0071400
rosa_samantha	Rh5BG158500 Rh5CG172900 Rh5DG158700
rosa_wichuraiana	Rw5G014210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	362
AciI	CCGC	1 cut(s)	362
AclWI	GGATC	1 cut(s)	574
AcsI	RAATTY	1 cut(s)	563
AfaI	GTAC	1 cut(s)	223
AgsI	TTSAA	1 cut(s)	205
AloI	GAACNNNNNNTCC	2 cut(s)	17, 49
AlwI	GGATC	1 cut(s)	574
AlwNI	CAGNNNCTG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	319
ApaI	GGGCCC	1 cut(s)	323
ApeKI	GCWGC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	563
AseI	ATTAAT	1 cut(s)	456
AspS9I	GGNCC	2 cut(s)	319, 320
AsuHPI	GGTGA	3 cut(s)	166, 220, 443
BaeGI	GKGCMC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	268
BccI	CCATC	4 cut(s)	14, 126, 332, 533
BisI	GCNGC	1 cut(s)	282
BlsI	GCNGC	1 cut(s)	283
BmgT120I	GGNCC	2 cut(s)	319, 320
BmiI	GGNNCC	3 cut(s)	320, 321, 322
BmsI	GCATC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	410
BseGI	GGATG	2 cut(s)	490, 564
BseRI	GAGGAG	4 cut(s)	245, 248, 251, 254
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	1 cut(s)	268
Bsh1236I	CGCG	1 cut(s)	362
BshFI	GGCC	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	295
BsiWI	CGTACG	1 cut(s)	221
BsnI	GGCC	1 cut(s)	321
Bsp120I	GGGCCC	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp143I	GATC	3 cut(s)	157, 357, 579
BspACI	CCGC	1 cut(s)	362
BspANI	GGCC	1 cut(s)	321
BspFNI	CGCG	1 cut(s)	362
BspLI	GGNNCC	3 cut(s)	320, 321, 322
BspPI	GGATC	1 cut(s)	574
BssMI	GATC	3 cut(s)	157, 357, 579
Bst4CI	ACNGT	3 cut(s)	226, 303, 311
Bst6I	CTCTTC	3 cut(s)	75, 539, 546
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	547
BstEII	GGTNACC	1 cut(s)	226
BstF5I	GGATG	2 cut(s)	490, 564
BstFNI	CGCG	1 cut(s)	362
BstKTI	GATC	3 cut(s)	160, 360, 582
BstMBI	GATC	3 cut(s)	157, 357, 579
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 368
BstPI	GGTNACC	1 cut(s)	226
BstSLI	GKGCMC	1 cut(s)	323
BstUI	CGCG	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	268
BstX2I	RGATCY	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	579
BsuRI	GGCC	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	490, 564
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	127
CaiI	CAGNNNCTG	1 cut(s)	377
Cfr13I	GGNCC	2 cut(s)	319, 320
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	2 cut(s)	196, 321
CviKI_1	RGCY	2 cut(s)	196, 321
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	1 cut(s)	547
DpnI	GATC	3 cut(s)	159, 359, 581
DpnII	GATC	3 cut(s)	157, 357, 579
Eam1104I	CTCTTC	3 cut(s)	75, 539, 546
EarI	CTCTTC	3 cut(s)	75, 539, 546
Eco24I	GRGCYC	1 cut(s)	323
Eco91I	GGTNACC	1 cut(s)	226
EcoO109I	RGGNCCY	2 cut(s)	319, 320
EcoO65I	GGTNACC	1 cut(s)	226
EcoT38I	GRGCYC	1 cut(s)	323
FaeI	CATG	1 cut(s)	235
FaiI	YATR	7 cut(s)	111, 113, 115, 233, 518, 520, 522
FalI	AAGNNNNNCTT	4 cut(s)	14, 46, 185, 217
FatI	CATG	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	282
FokI	GGATG	2 cut(s)	497, 571
FriOI	GRGCYC	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	282
GluI	GCNGC	1 cut(s)	282
HaeIII	GGCC	1 cut(s)	321
HapII	CCGG	1 cut(s)	295
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	235
HinfI	GANTC	3 cut(s)	38, 436, 488
HpaII	CCGG	1 cut(s)	295
HphI	GGTGA	3 cut(s)	166, 220, 443
Hpy188I	TCNGA	2 cut(s)	351, 379
Hpy188III	TCNNGA	1 cut(s)	415
Hpy99I	CGWCG	2 cut(s)	311, 496
HpyAV	CCTTC	2 cut(s)	190, 260
HpyCH4III	ACNGT	3 cut(s)	226, 303, 311
HpyCH4IV	ACGT	2 cut(s)	12, 220
HpyCH4V	TGCA	2 cut(s)	138, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 368
HpyF3I	CTNAG	1 cut(s)	547
HpySE526I	ACGT	2 cut(s)	12, 220
Hsp92II	CATG	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	157, 357, 579
LpnPI	CCDG	4 cut(s)	112, 139, 308, 428
Lsp1109I	GCAGC	1 cut(s)	268
LweI	GCATC	1 cut(s)	228
MaeII	ACGT	2 cut(s)	12, 220
MaeIII	GTNAC	2 cut(s)	226, 242
MalI	GATC	3 cut(s)	159, 359, 581
MboI	GATC	3 cut(s)	157, 357, 579
MboII	GAAGA	8 cut(s)	54, 57, 62, 221, 455, 458, 526, 563
MflI	RGATCY	1 cut(s)	579
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	4 cut(s)	51, 453, 457, 563
MlyI	GAGTC	3 cut(s)	32, 445, 497
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	9 cut(s)	55, 95, 266, 269, 272, 275, 443, 547, 562
MseI	TTAA	1 cut(s)	456
MslI	CAYNNNNRTG	2 cut(s)	233, 236
MspI	CCGG	1 cut(s)	295
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	135, 368
NdeII	GATC	3 cut(s)	157, 357, 579
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	3 cut(s)	320, 321, 322
NmuCI	GTSAC	2 cut(s)	226, 242
Pfl23II	CGTACG	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	283
PleI	GAGTC	3 cut(s)	32, 444, 496
PpsI	GAGTC	3 cut(s)	32, 444, 496
PshBI	ATTAAT	1 cut(s)	456
PspEI	GGTNACC	1 cut(s)	226
PspLI	CGTACG	1 cut(s)	221
PspN4I	GGNNCC	3 cut(s)	320, 321, 322
PspOMI	GGGCCC	1 cut(s)	319
PspPI	GGNCC	2 cut(s)	319, 320
PstNI	CAGNNNCTG	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	579
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
RseI	CAYNNNNRTG	2 cut(s)	233, 236
SaqAI	TTAA	1 cut(s)	456
SatI	GCNGC	1 cut(s)	282
Sau3AI	GATC	3 cut(s)	157, 357, 579
Sau96I	GGNCC	2 cut(s)	319, 320
SchI	GAGTC	3 cut(s)	32, 445, 497
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	7 cut(s)	15, 32, 47, 87, 146, 182, 223
SfaNI	GCATC	1 cut(s)	228
SmiMI	CAYNNNNRTG	2 cut(s)	233, 236
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	4 cut(s)	51, 453, 457, 563
SsiI	CCGC	1 cut(s)	362
TaaI	ACNGT	3 cut(s)	226, 303, 311
TaiI	ACGT	2 cut(s)	15, 223
TaqI	TCGA	5 cut(s)	36, 156, 306, 327, 537
TasI	AATT	4 cut(s)	51, 453, 457, 563
Tru1I	TTAA	1 cut(s)	456
Tru9I	TTAA	1 cut(s)	456
TscAI	CASTG	1 cut(s)	251
TseFI	GTSAC	2 cut(s)	226, 242
TseI	GCWGC	1 cut(s)	281
Tsp45I	GTSAC	2 cut(s)	226, 242
TspDTI	ATGAA	2 cut(s)	505, 575
TspGWI	ACGGA	1 cut(s)	45
TspRI	CASTG	1 cut(s)	251
VspI	ATTAAT	1 cut(s)	456
XapI	RAATTY	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.