Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0009637

Physical Location & Seq

Genomic Coordinates Reverse (-)

8001699 .. 8003759

Gene Structure 2061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTCCCCCAGAATTGCTCAAATCCGCCTTGTCAGCTCACATCGCGAGGTTTATGAACCGTGTGATGATTCATTTGCTTTAGTAGATGCGCTTTTAGCTGATCAAGCAAATTTATTACAGCATCGACCAAAATTGTGCATGGAACTGGGCTGTGGTAGTGGCTATGTTATTACTTCTCTAGCTCTTATTCTTGGCAAGGAGGGGCATTTTATTGCAACTGATATTAACCCTCATGCGGTCAGAGTGACTCAGGAGACACTGGAAGCACATGGGGTTCATGCAGAATTGATAAACACTAACATTGCATCAGGACTTGAGAAGCGTCTGGCGGGATTAGTAGATGTAATAGTTGTGAACCCGCCTTATGTGCCTACCCCCGAAGATGAAGTGGGTCGTGAAGGGATTGCATCTGCTTGGGCTGGGGGAGAGAATGGCCGTGCTGTGATTGATAAGATACTGCCTGTTGCCGACAATCTTTTGTCAGAGAAAGGCTGGTTGTATATGGTCACACTTTCAGAAAACAATCCATCAGAAATATGCCTCCAAATGAGAGAGAAAGGCTATGCTTCCAGGATCCTTGTCCAGAGATTGACAGATGAAGAGAGTCTCCAGATCATCAAGTTCTGGCGGGATGTTGATTCTCAATCAGAAGCAAAGGAGATGGCAACAAACAAAACAGTTCCTTCAAGGGTCATGGAGACTTTGCGGTCACAATTTCCTAGAATGCCGTTTCTCGGAAGCAATAACAGCAACAGTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS

Protein Analysis

254

Amino Acids

27.89

Weight (kDa)

5.21

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MTS	PF05175	42 - 170	6.7e-11	Methyltransferase small domain
Methyltransf_31	PF13847	47 - 191	2e-09	Methyltransferase domain
Methyltransf_25	PF13649	47 - 118	7.6e-07	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009637)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13440 AT3G13440 AT3G13440
fragaria_vesca	FvH4_3g13390 FvH4_3g13390
malus_domestica	MD05G1242200.v1.1
prunus_persica	Prupe.4G121300_v2.0.a1 Prupe.4G121300_v2.0.a1 Prupe.4G121300_v2.0.a1
pyrus_communis	pycom05g21870
rosa_chinensis	RchiOBHm_Chr5g0022101
rosa_laevigata	RLG00000032644
rosa_multiflora	Rmu_co8399787.1_g000001 Rmu_sc0026188.1_g000002 Rmu_sc0028874.1_g000002
rosa_roxburghii	Rroxscaffold_1G00056830
rosa_rugosa	Rorug05G0071300 Rorug05G0071400
rosa_samantha	Rh5BG158500 Rh5CG172900 Rh5DG158700
rosa_wichuraiana	Rw5G014210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	706
AccII	CGCG	1 cut(s)	45
AciI	CCGC	6 cut(s)	25, 236, 329, 359, 628, 706
AclWI	GGATC	2 cut(s)	568, 581
AcoI	YGGCCR	1 cut(s)	433
AcsI	RAATTY	1 cut(s)	109
AfiI	CCNNNNNNNGG	2 cut(s)	235, 734
AgsI	TTSAA	1 cut(s)	687
AjnI	CCWGG	1 cut(s)	569
AluBI	AGCT	4 cut(s)	36, 98, 182, 759
AluI	AGCT	4 cut(s)	36, 98, 182, 759
Alw26I	GTCTC	3 cut(s)	248, 611, 692
AlwI	GGATC	2 cut(s)	568, 581
AlwNI	CAGNNNCTG	1 cut(s)	759
AoxI	GGCC	1 cut(s)	433
ApoI	RAATTY	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	573
BccI	CCATC	2 cut(s)	535, 655
BceAI	ACGGC	2 cut(s)	420, 712
BciT130I	CCWGG	1 cut(s)	571
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	3 cut(s)	248, 611, 692
BfaI	CTAG	2 cut(s)	179, 720
Bme1390I	CCNGG	1 cut(s)	571
BmiI	GGNNCC	1 cut(s)	575
BmrFI	CCNGG	1 cut(s)	571
BmrI	ACTGGG	1 cut(s)	155
BmsI	GCATC	4 cut(s)	76, 130, 314, 416
BmuI	ACTGGG	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	593
BpuEI	CTTGAG	1 cut(s)	335
Bsc4I	CCNNNNNNNGG	2 cut(s)	235, 734
Bse1I	ACTGG	2 cut(s)	150, 264
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	571
BseGI	GGATG	1 cut(s)	637
BseLI	CCNNNNNNNGG	2 cut(s)	235, 734
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	2 cut(s)	150, 264
BseYI	CCCAGC	1 cut(s)	419
Bsh1236I	CGCG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	435
BslI	CCNNNNNNNGG	2 cut(s)	235, 734
BsmAI	GTCTC	3 cut(s)	248, 611, 692
BsmI	GAATGC	1 cut(s)	729
BsnI	GGCC	1 cut(s)	435
Bsp143I	GATC	3 cut(s)	100, 573, 612
Bsp68I	TCGCGA	1 cut(s)	45
BspACI	CCGC	6 cut(s)	25, 236, 329, 359, 628, 706
BspANI	GGCC	1 cut(s)	435
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	575
BspPI	GGATC	2 cut(s)	568, 581
BsrDI	GCAATG	1 cut(s)	300
BsrI	ACTGG	2 cut(s)	150, 264
BssMI	GATC	3 cut(s)	100, 573, 612
Bst2UI	CCWGG	1 cut(s)	571
Bst4CI	ACNGT	3 cut(s)	60, 679, 755
Bst6I	CTCTTC	1 cut(s)	594
BstDEI	CTNAG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	637
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	3 cut(s)	103, 576, 615
BstMAI	GTCTC	3 cut(s)	248, 611, 692
BstMBI	GATC	3 cut(s)	100, 573, 612
BstMWI	GCNNNNNNNGC	7 cut(s)	33, 42, 95, 104, 367, 747, 756
BstNI	CCWGG	1 cut(s)	571
BstSCI	CCNGG	1 cut(s)	569
BstUI	CGCG	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	573
BstYI	RGATCY	1 cut(s)	573
BsuRI	GGCC	1 cut(s)	435
BtgZI	GCGATG	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	637
BtsIMutI	CAGTG	1 cut(s)	257
BtuMI	TCGCGA	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	759
CfoI	GCGC	1 cut(s)	91
CseI	GACGC	1 cut(s)	311
CviAII	CATG	5 cut(s)	139, 233, 269, 278, 694
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	3 cut(s)	102, 575, 614
DpnII	GATC	3 cut(s)	100, 573, 612
DrdI	GACNNNNNNGTC	1 cut(s)	706
DseDI	GACNNNNNNGTC	1 cut(s)	706
EaeI	YGGCCR	1 cut(s)	433
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
EciI	GGCGGA	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	569
FaeI	CATG	5 cut(s)	142, 236, 272, 281, 697
FatI	CATG	5 cut(s)	138, 232, 268, 277, 693
FauI	CCCGC	3 cut(s)	322, 366, 621
FbaI	TGATCA	1 cut(s)	100
FokI	GGATG	1 cut(s)	644
FspBI	CTAG	2 cut(s)	179, 720
GlaI	GCGC	1 cut(s)	90
GsaI	CCCAGC	1 cut(s)	423
GsuI	CTGGAG	1 cut(s)	593
HaeIII	GGCC	1 cut(s)	435
HgaI	GACGC	1 cut(s)	311
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	5 cut(s)	142, 236, 272, 281, 697
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HinfI	GANTC	4 cut(s)	68, 247, 604, 638
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	6 cut(s)	242, 484, 517, 532, 649, 737
Hpy188III	TCNNGA	6 cut(s)	44, 251, 309, 395, 583, 610
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	2 cut(s)	392, 693
HpyCH4III	ACNGT	3 cut(s)	60, 679, 755
HpyCH4V	TGCA	5 cut(s)	138, 215, 281, 305, 407
HpyF10VI	GCNNNNNNNGC	7 cut(s)	33, 42, 95, 104, 367, 747, 756
HpyF3I	CTNAG	1 cut(s)	249
Hsp92II	CATG	5 cut(s)	142, 236, 272, 281, 697
HspAI	GCGC	1 cut(s)	89
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	100, 573, 612
LweI	GCATC	4 cut(s)	76, 130, 314, 416
MaeI	CTAG	2 cut(s)	179, 720
MaeIII	GTNAC	3 cut(s)	244, 505, 708
MalI	GATC	3 cut(s)	102, 575, 614
MboI	GATC	3 cut(s)	100, 573, 612
MboII	GAAGA	2 cut(s)	392, 611
MflI	RGATCY	1 cut(s)	573
MluCI	AATT	5 cut(s)	12, 109, 131, 284, 713
MlyI	GAGTC	2 cut(s)	241, 613
MnlI	CCTC	4 cut(s)	40, 193, 240, 551
MseI	TTAA	1 cut(s)	225
MspR9I	CCNGG	1 cut(s)	571
Mva1269I	GAATGC	1 cut(s)	729
MvaI	CCWGG	1 cut(s)	571
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	7 cut(s)	33, 42, 95, 104, 367, 747, 756
NdeII	GATC	3 cut(s)	100, 573, 612
NlaIII	CATG	5 cut(s)	142, 236, 272, 281, 697
NlaIV	GGNNCC	1 cut(s)	575
NmuCI	GTSAC	3 cut(s)	244, 505, 708
NruI	TCGCGA	1 cut(s)	45
PctI	GAATGC	1 cut(s)	729
PfeI	GAWTC	2 cut(s)	68, 638
PfoI	TCCNGGA	1 cut(s)	569
PleI	GAGTC	2 cut(s)	241, 612
PpsI	GAGTC	2 cut(s)	241, 612
Psp6I	CCWGG	1 cut(s)	569
PspFI	CCCAGC	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	569
PspN4I	GGNNCC	1 cut(s)	575
PstNI	CAGNNNCTG	1 cut(s)	759
PsuI	RGATCY	1 cut(s)	573
RruI	TCGCGA	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	225
Sau3AI	GATC	3 cut(s)	100, 573, 612
SchI	GAGTC	2 cut(s)	241, 613
ScrFI	CCNGG	1 cut(s)	571
SetI	ASST	5 cut(s)	38, 51, 100, 184, 761
SfaNI	GCATC	4 cut(s)	76, 130, 314, 416
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	5 cut(s)	12, 109, 131, 284, 713
SsiI	CCGC	6 cut(s)	25, 236, 329, 359, 628, 706
SspMI	CTAG	2 cut(s)	179, 720
StyD4I	CCNGG	1 cut(s)	569
TaaI	ACNGT	3 cut(s)	60, 679, 755
TaqI	TCGA	1 cut(s)	124
TasI	AATT	5 cut(s)	12, 109, 131, 284, 713
TfiI	GAWTC	2 cut(s)	68, 638
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	264
TseFI	GTSAC	3 cut(s)	244, 505, 708
Tsp45I	GTSAC	3 cut(s)	244, 505, 708
TspDTI	ATGAA	5 cut(s)	60, 69, 266, 399, 612
TspRI	CASTG	1 cut(s)	264
XapI	RAATTY	1 cut(s)	109
XspI	CTAG	2 cut(s)	179, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.