AT3G13960

growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0013899
Physical Location & Seq
Forward (+)
4608076 .. 4610497
2422 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13960.1

Sequence Viewer

Length: 1194 bp
ATGATGAGTCTAAGTGGAAGTAGCGGGAGAACAATAGGAAGGCCTCCATTTACACCAACACAATGGGAAGAACTGGAACATCAAGCCCTAATCTACAAGTACATGGTCTCTGGTGTTCCTGTCCCACCTGAGCTCATCTTCTCCATTAGAAGAAGCTTGGACACTTCCTTGGTCTCTAGACTCCTTCCTCACCAATCCCTTGGATGGGGGTGTTACCAGATGGGATTTGGGAGAAAACCAGATCCAGAGCCAGGAAGATGCAGAAGAACAGATGGTAAGAAATGGAGATGCTCAAGAGAAGCTTACCCAGATTCGAAGTACTGTGAAAAACACATGCACAGAGGAAGAAACCGTGCCAGAAAATCTCTTGATCAGAATCAGACAACAACAACTCCTTTAACATCACCATCTCTCTCATTCACCAACAACAACAACCCAAGTCCCACCTTGTCTTCTTCTTCTTCCTCTAATTCCTCTTCTACTACTTATTCTGCTTCTTCTTCTTCAATGGATGCCTACAGTAACAGTAATAGGTTTGGGCTTGGTGGAAGTAGTAGTAACACTAGAGGTTATTTCAACAGCCATTCTCTTGATTATCCTTATCCTTCTACTTCACCCAAACAACAACAACAAACTCTTCATCATGCTTCCGCTTTGTCACTTCATCAAAATACTAATTCTACTTCTCAGTTCAATGTCTTAGCCTCTGCTACTGACCACAAAGACTTCAGGTACTTTCAAGGGATTGGGGAGAGAGTTGGAGGAGTTGGGGAGAGAACGTTCTTTCCAGAAGCATCTAGAAGCTTTCAAGATTCTCCATACCATCATCACCAACAACCGTTAGCAACAGTGATGAATGATCCGTACCACCACTGTAGTACTGATCATAATAAGATTGATCATCATCACACATACTCATCCTCATCATCATCTCAACATCTTCATCATGATCATGATCATAGACAGCAACAGTGTTTTGTTTTGGGCGCCGACATGTTCAACAAACCTACAAGAAGTGTCCTTGCAAACTCATCAAGACAAGATCAAAATCAAGAAGAAGATGAGAAAGATTCATCAGAGTCGTCCAAGAAGTCTCTACATCACTTCTTTGGTGAGGACTGGGCACAGAACAAGAACAGTTCAGATTCTTGGCTTGACCTTTCTTCCCACTCAAGACTCGACACTGGTAGCTAA

Protein Analysis

397

Amino Acids

44.7

Weight (kDa)

8.18

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 16 - 50 1.9e-16 QLQ
WRC PF08879 82 - 122 1.7e-20 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13960
fragaria_vesca FvH4_6g34730 FvH4_6g34730 FvH4_6g34730
malus_domestica MD09G1183300.v1.1
prunus_persica Prupe.3G041800_v2.0.a1
pyrus_communis pycom09g10100
rosa_chinensis RchiOBHm_Chr2g0145381
rosa_laevigata RLG00000020139
rosa_multiflora Rmu_sc0001298.1_g000050
rosa_roxburghii Rroxscaffold_2G00100740
rosa_rugosa Rorug02G0391800
rosa_samantha Rh2AG445100 Rh2BG455900 Rh2CG431900 Rh2DG465800
rosa_wichuraiana Rw2G036350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 986
AciI CCGC 2 cut(s) 24, 651
AclI AACGTT 1 cut(s) 779
AclWI GGATC 2 cut(s) 236, 854
AcuI CTGAAG 1 cut(s) 712
AcyI GRCGYC 1 cut(s) 987
AfaI GTAC 5 cut(s) 101, 320, 734, 866, 880
AfiI CCNNNNNNNGG 3 cut(s) 204, 205, 251
AflIII ACRYGT 1 cut(s) 993
AgsI TTSAA 6 cut(s) 507, 577, 694, 740, 809, 1000
AjnI CCWGG 1 cut(s) 250
AloI GAACNNNNNNTCC 4 cut(s) 764, 769, 796, 801
AluBI AGCT 5 cut(s) 133, 156, 302, 804, 1191
AluI AGCT 5 cut(s) 133, 156, 302, 804, 1191
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 3 cut(s) 112, 178, 1098
AlwI GGATC 2 cut(s) 236, 854
AoxI GGCC 1 cut(s) 41
AspLEI GCGC 1 cut(s) 989
AsuHPI GGTGA 6 cut(s) 182, 396, 412, 606, 821, 1124
AsuII TTCGAA 1 cut(s) 314
BaeGI GKGCMC 1 cut(s) 1126
BanI GGYRCC 1 cut(s) 986
BanII GRGCYC 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 135
BccI CCATC 5 cut(s) 198, 214, 266, 415, 831
BciT130I CCWGG 1 cut(s) 252
BclI TGATCA 5 cut(s) 370, 883, 898, 949, 955
BcoDI GTCTC 3 cut(s) 112, 178, 1098
BfaI CTAG 3 cut(s) 177, 564, 798
BfmI CTRYAG 2 cut(s) 517, 874
BfoI RGCGCY 1 cut(s) 990
BmcAI AGTACT 2 cut(s) 320, 880
Bme1390I CCNGG 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 988
BmrFI CCNGG 1 cut(s) 252
BmrI ACTGGG 1 cut(s) 1129
BmsI GCATC 4 cut(s) 248, 278, 502, 803
BmuI ACTGGG 1 cut(s) 1129
BpiI GAAGAC 1 cut(s) 444
Bpu10I CCTNAGC 1 cut(s) 129
Bpu14I TTCGAA 1 cut(s) 314
BpuEI CTTGAG 2 cut(s) 277, 1156
BsaBI GATNNNNATC 4 cut(s) 375, 903, 954, 1047
BsaHI GRCGYC 1 cut(s) 987
BsaI GGTCTC 2 cut(s) 112, 178
BsaJI CCNNGG 2 cut(s) 168, 199
BsaXI ACNNNNNCTCC 4 cut(s) 376, 406, 764, 794
Bsc4I CCNNNNNNNGG 3 cut(s) 204, 205, 251
Bse1I ACTGG 3 cut(s) 78, 1124, 1189
Bse8I GATNNNNATC 4 cut(s) 375, 903, 954, 1047
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 168, 199
BseGI GGATG 3 cut(s) 209, 517, 917
BseJI GATNNNNATC 4 cut(s) 375, 903, 954, 1047
BseLI CCNNNNNNNGG 3 cut(s) 204, 205, 251
BseMII CTCAG 2 cut(s) 120, 701
BseNI ACTGG 3 cut(s) 78, 1124, 1189
BseRI GAGGAG 1 cut(s) 777
BseSI GKGCMC 1 cut(s) 1126
BshFI GGCC 1 cut(s) 43
BshNI GGYRCC 1 cut(s) 986
BsiHKAI GWGCWC 1 cut(s) 135
BslFI GGGAC 2 cut(s) 107, 426
BslI CCNNNNNNNGG 3 cut(s) 204, 205, 251
BsmAI GTCTC 3 cut(s) 112, 178, 1098
BsmFI GGGAC 2 cut(s) 107, 426
BsnI GGCC 1 cut(s) 43
Bso31I GGTCTC 2 cut(s) 112, 178
Bsp119I TTCGAA 1 cut(s) 314
Bsp1286I GDGCHC 2 cut(s) 135, 1126
Bsp143I GATC 8 cut(s) 241, 370, 859, 883, 898, 949, 955, 1042
BspACI CCGC 2 cut(s) 24, 651
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 2 cut(s) 121, 700
BspHI TCATGA 2 cut(s) 946, 952
BspLI GGNNCC 1 cut(s) 988
BspPI GGATC 2 cut(s) 236, 854
BspT104I TTCGAA 1 cut(s) 314
BspT107I GGYRCC 1 cut(s) 986
BspTNI GGTCTC 2 cut(s) 112, 178
BsrI ACTGG 3 cut(s) 78, 1124, 1189
BssECI CCNNGG 2 cut(s) 168, 199
BssMI GATC 8 cut(s) 241, 370, 859, 883, 898, 949, 955, 1042
BssNI GRCGYC 1 cut(s) 987
BssT1I CCWWGG 2 cut(s) 168, 199
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 9 cut(s) 323, 353, 521, 527, 840, 850, 875, 972, 1139
Bst6I CTCTTC 2 cut(s) 481, 642
BstACI GRCGYC 1 cut(s) 987
BstBI TTCGAA 1 cut(s) 314
BstDEI CTNAG 4 cut(s) 11, 129, 687, 700
BstF5I GGATG 3 cut(s) 209, 517, 917
BstH2I RGCGCY 1 cut(s) 990
BstHHI GCGC 1 cut(s) 989
BstKTI GATC 8 cut(s) 244, 373, 862, 886, 901, 952, 958, 1045
BstMAI GTCTC 3 cut(s) 112, 178, 1098
BstMBI GATC 8 cut(s) 241, 370, 859, 883, 898, 949, 955, 1042
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 2 cut(s) 337, 997
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 2 cut(s) 517, 874
BstSLI GKGCMC 1 cut(s) 1126
BstV2I GAAGAC 1 cut(s) 444
BstX2I RGATCY 1 cut(s) 241
BstXI CCANNNNNNTGG 2 cut(s) 63, 200
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 1 cut(s) 43
BtsCI GGATG 3 cut(s) 209, 517, 917
BtsIMutI CAGTG 4 cut(s) 855, 871, 977, 1182
CciI TCATGA 2 cut(s) 946, 952
CfoI GCGC 1 cut(s) 989
Csp6I GTAC 5 cut(s) 100, 319, 733, 865, 879
CviAII CATG 6 cut(s) 103, 334, 644, 947, 953, 994
CviQI GTAC 5 cut(s) 100, 319, 733, 865, 879
DdeI CTNAG 4 cut(s) 11, 129, 687, 700
DinI GGCGCC 1 cut(s) 988
DpnI GATC 8 cut(s) 243, 372, 861, 885, 900, 951, 957, 1044
DpnII GATC 8 cut(s) 241, 370, 859, 883, 898, 949, 955, 1042
Eam1104I CTCTTC 2 cut(s) 481, 642
EarI CTCTTC 2 cut(s) 481, 642
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 2 cut(s) 168, 199
Eco147I AGGCCT 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 135
Eco31I GGTCTC 2 cut(s) 112, 178
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 712
EcoICRI GAGCTC 1 cut(s) 133
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 2 cut(s) 168, 199
EcoT38I GRGCYC 1 cut(s) 135
EgeI GGCGCC 1 cut(s) 988
EheI GGCGCC 1 cut(s) 988
ErhI CCWWGG 2 cut(s) 168, 199
FaeI CATG 6 cut(s) 106, 337, 647, 950, 956, 997
FalI AAGNNNNNCTT 2 cut(s) 286, 318
FaqI GGGAC 2 cut(s) 107, 426
FatI CATG 6 cut(s) 102, 333, 643, 946, 952, 993
FauI CCCGC 1 cut(s) 17
FbaI TGATCA 5 cut(s) 370, 883, 898, 949, 955
FokI GGATG 3 cut(s) 216, 524, 904
FriOI GRGCYC 1 cut(s) 135
FspBI CTAG 3 cut(s) 177, 564, 798
GlaI GCGC 1 cut(s) 988
HaeII RGCGCY 1 cut(s) 990
HaeIII GGCC 1 cut(s) 43
HhaI GCGC 1 cut(s) 989
Hin1I GRCGYC 1 cut(s) 987
Hin1II CATG 6 cut(s) 106, 337, 647, 950, 956, 997
Hin6I GCGC 1 cut(s) 987
HinP1I GCGC 1 cut(s) 987
HindIII AAGCTT 3 cut(s) 154, 300, 802
HinfI GANTC 9 cut(s) 7, 180, 311, 376, 812, 1070, 1079, 1145, 1176
HphI GGTGA 6 cut(s) 182, 396, 412, 606, 821, 1124
Hpy188I TCNGA 4 cut(s) 375, 381, 1078, 1144
HpyAV CCTTC 3 cut(s) 33, 194, 615
HpyCH4III ACNGT 9 cut(s) 323, 353, 521, 527, 840, 850, 875, 972, 1139
HpyCH4IV ACGT 1 cut(s) 779
HpyCH4V TGCA 3 cut(s) 261, 337, 1025
HpyF3I CTNAG 4 cut(s) 11, 129, 687, 700
HpySE526I ACGT 1 cut(s) 779
Hsp92I GRCGYC 1 cut(s) 987
Hsp92II CATG 6 cut(s) 106, 337, 647, 950, 956, 997
HspAI GCGC 1 cut(s) 987
KasI GGCGCC 1 cut(s) 986
Ksp22I TGATCA 5 cut(s) 370, 883, 898, 949, 955
Kzo9I GATC 8 cut(s) 241, 370, 859, 883, 898, 949, 955, 1042
LweI GCATC 4 cut(s) 248, 278, 502, 803
MaeI CTAG 3 cut(s) 177, 564, 798
MaeII ACGT 1 cut(s) 779
MaeIII GTNAC 4 cut(s) 212, 521, 557, 657
MalI GATC 8 cut(s) 243, 372, 861, 885, 900, 951, 957, 1044
MboI GATC 8 cut(s) 241, 370, 859, 883, 898, 949, 955, 1042
MflI RGATCY 1 cut(s) 241
MhlI GDGCHC 2 cut(s) 135, 1126
MluCI AATT 2 cut(s) 469, 676
Mly113I GGCGCC 1 cut(s) 987
MlyI GAGTC 4 cut(s) 16, 174, 1088, 1170
MmeI TCCRAC 1 cut(s) 739
MseI TTAA 1 cut(s) 398
MslI CAYNNNNRTG 1 cut(s) 951
MspR9I CCNGG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 252
NarI GGCGCC 1 cut(s) 987
NdeII GATC 8 cut(s) 241, 370, 859, 883, 898, 949, 955, 1042
NlaIII CATG 6 cut(s) 106, 337, 647, 950, 956, 997
NlaIV GGNNCC 1 cut(s) 988
NmuCI GTSAC 1 cut(s) 657
NspI RCATGY 2 cut(s) 337, 997
NspV TTCGAA 1 cut(s) 314
PagI TCATGA 2 cut(s) 946, 952
PceI AGGCCT 1 cut(s) 43
PciI ACATGT 1 cut(s) 993
PfeI GAWTC 5 cut(s) 311, 376, 812, 1070, 1145
PleI GAGTC 4 cut(s) 15, 174, 1087, 1170
PluTI GGCGCC 1 cut(s) 990
PpsI GAGTC 4 cut(s) 15, 174, 1087, 1170
PscI ACATGT 1 cut(s) 993
Psp124BI GAGCTC 1 cut(s) 135
Psp1406I AACGTT 1 cut(s) 779
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 988
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 5 cut(s) 101, 320, 734, 866, 880
RsaNI GTAC 5 cut(s) 100, 319, 733, 865, 879
RseI CAYNNNNRTG 1 cut(s) 951
SacI GAGCTC 1 cut(s) 135
SaqAI TTAA 1 cut(s) 398
Sau3AI GATC 8 cut(s) 241, 370, 859, 883, 898, 949, 955, 1042
ScaI AGTACT 2 cut(s) 320, 880
SchI GAGTC 4 cut(s) 16, 174, 1088, 1170
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 2 cut(s) 135, 1126
SfaNI GCATC 4 cut(s) 248, 278, 502, 803
SfcI CTRYAG 2 cut(s) 517, 874
SfoI GGCGCC 1 cut(s) 988
SfuI TTCGAA 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 951
SmlI CTYRAG 2 cut(s) 292, 1171
SmoI CTYRAG 2 cut(s) 292, 1171
Sse9I AATT 2 cut(s) 469, 676
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 2 cut(s) 24, 651
SspDI GGCGCC 1 cut(s) 986
SspMI CTAG 3 cut(s) 177, 564, 798
SstI GAGCTC 1 cut(s) 135
StuI AGGCCT 1 cut(s) 43
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 2 cut(s) 168, 199
TaaI ACNGT 9 cut(s) 323, 353, 521, 527, 840, 850, 875, 972, 1139
TaiI ACGT 1 cut(s) 782
TaqI TCGA 2 cut(s) 314, 1179
TasI AATT 2 cut(s) 469, 676
TatI WGTACW 3 cut(s) 99, 318, 878
TfiI GAWTC 5 cut(s) 311, 376, 812, 1070, 1145
Tru1I TTAA 1 cut(s) 398
Tru9I TTAA 1 cut(s) 398
TscAI CASTG 4 cut(s) 855, 878, 977, 1189
TseFI GTSAC 1 cut(s) 657
Tsp45I GTSAC 1 cut(s) 657
TspDTI ATGAA 5 cut(s) 629, 653, 869, 932, 1062
TspGWI ACGGA 1 cut(s) 852
TspRI CASTG 4 cut(s) 855, 878, 977, 1189
XbaI TCTAGA 2 cut(s) 176, 797
XceI RCATGY 2 cut(s) 337, 997
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XspI CTAG 3 cut(s) 177, 564, 798
ZrmI AGTACT 2 cut(s) 320, 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.