RLG00000020139

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0013899
Physical Location & Seq
Reverse (-)
61538072 .. 61539360
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020139

Sequence Viewer

Length: 990 bp
ATGATGAGTGGAGGAAATCCAAGTAGCGCAAGGAATTACAGGTACCCTTTCACAGCAACACAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTTCAAGTACATGGTCTCTGGAGTCCCCATCCCAACTGATCTTGTCTATTCGTTTAAAAGAAGACTGGACTCCTCAATCTCTTCCAGACTCTTCCCTCACCACCCCTTTGGGTGGGGTTGCTATGATATGGGCTTTGGCAGAAAGATAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGTAAAAAATGGAGGTGTTCAAAGGAAGCATACCCAGATTCTAAGTACTGTGAGAGGCATATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGCTTCTTCTGGTTCTTCTACTACAAACACTACTCCTAATAATAATAATACTATTCCAACACCTCCAGAGTACAACCCTGCTTCAATCCACAAAAACCTCTCCAAAACCTCCCCTTCAATGTTTTCCTCGTCTTTCACCAATGAAACACCTCACACCCAACACCAAAGTTCATCTCTTTATCCATTCCTTTCTAGGCCACAGGGTTCTGGTACCAACCCTCAACTTTTTCTGAACTCTGGATCTTATGTTAGTGAAGCTGATCACAGAGATTACAGGTATCTTCAAGGAACAAAGGAAGGTGTGGATCATGAGCTAGCCTTCTTTCCTGCAGAGTCTTCTGCAAATGCAAGAAGCTTAATGAGCTCCTATAAAGGCTACTCATCCCAATCTCAGTTTCAAAGCCTCACAGATCATTATCCACAGCAGCAATCCCAGGATGAGCAGCATTGCTATGTTTTGGGCACTGATTTCAAATCAAGCAGACCAATCAAAACAGAGAATAAAGAAGCTGATCAGACCCAAAAGTCCCTCCACCATTTCTTTGGAGACTGGCCTCCAAAGTCCACAGACACCTGGCTTGATCTTGCACCCAATTCCAGACTTCATAATGATGGTTGA

Protein Analysis

330

Amino Acids

37.46

Weight (kDa)

8.94

Isoelectric Point (pI)

57.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 16 - 46 2.3e-14 QLQ
WRC PF08879 82 - 124 3.2e-21 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13960
fragaria_vesca FvH4_6g34730 FvH4_6g34730 FvH4_6g34730
malus_domestica MD09G1183300.v1.1
prunus_persica Prupe.3G041800_v2.0.a1
pyrus_communis pycom09g10100
rosa_chinensis RchiOBHm_Chr2g0145381
rosa_laevigata RLG00000020139
rosa_multiflora Rmu_sc0001298.1_g000050
rosa_roxburghii Rroxscaffold_2G00100740
rosa_rugosa Rorug02G0391800
rosa_samantha Rh2AG445100 Rh2BG455900 Rh2CG431900 Rh2DG465800
rosa_wichuraiana Rw2G036350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 895
Acc65I GGTACC 2 cut(s) 42, 581
AccB1I GGYRCC 2 cut(s) 42, 581
AclWI GGATC 2 cut(s) 619, 684
AfaI GTAC 5 cut(s) 44, 101, 320, 443, 583
AfiI CCNNNNNNNGG 2 cut(s) 204, 251
AgsI TTSAA 9 cut(s) 77, 97, 294, 357, 456, 489, 656, 770, 844
AjnI CCWGG 3 cut(s) 250, 804, 944
AjuI GAANNNNNNNTTGG 2 cut(s) 750, 782
AluBI AGCT 8 cut(s) 73, 86, 374, 629, 685, 726, 735, 881
AluI AGCT 8 cut(s) 73, 86, 374, 629, 685, 726, 735, 881
Alw21I GWGCWC 1 cut(s) 737
Alw26I GTCTC 2 cut(s) 112, 912
AlwI GGATC 2 cut(s) 619, 684
AoxI GGCC 2 cut(s) 566, 923
ApeKI GCWGC 2 cut(s) 796, 814
Asp700I GAANNNNTTC 1 cut(s) 352
Asp718I GGTACC 2 cut(s) 42, 581
AspLEI GCGC 1 cut(s) 29
AsuHPI GGTGA 2 cut(s) 182, 499
AsuNHI GCTAGC 1 cut(s) 685
BaeGI GKGCMC 1 cut(s) 836
BanI GGYRCC 2 cut(s) 42, 581
BanII GRGCYC 1 cut(s) 737
BbsI GAAGAC 2 cut(s) 160, 699
Bbv12I GWGCWC 1 cut(s) 737
BbvI GCAGC 2 cut(s) 808, 826
BccI CCATC 3 cut(s) 128, 266, 977
BciT130I CCWGG 3 cut(s) 252, 806, 946
BclI TGATCA 2 cut(s) 631, 883
BcoDI GTCTC 2 cut(s) 112, 912
BfaI CTAG 2 cut(s) 564, 686
BfmI CTRYAG 1 cut(s) 699
BisI GCNGC 2 cut(s) 797, 815
BlsI GCNGC 2 cut(s) 798, 816
BmcAI AGTACT 1 cut(s) 320
Bme1390I CCNGG 3 cut(s) 252, 806, 946
BmiI GGNNCC 2 cut(s) 44, 583
BmrFI CCNGG 3 cut(s) 252, 806, 946
BmtI GCTAGC 1 cut(s) 689
BpiI GAAGAC 2 cut(s) 160, 699
BpmI CTGGAG 2 cut(s) 132, 420
BsaBI GATNNNNATC 1 cut(s) 786
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 804
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 251
Bse1I ACTGG 2 cut(s) 162, 926
Bse3DI GCAATG 1 cut(s) 817
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 3 cut(s) 252, 806, 946
BseDI CCNNGG 1 cut(s) 804
BseGI GGATG 3 cut(s) 120, 752, 814
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 2 cut(s) 204, 251
BseMI GCAATG 1 cut(s) 817
BseMII CTCAG 1 cut(s) 776
BseNI ACTGG 2 cut(s) 162, 926
BseRI GAGGAG 1 cut(s) 154
BseSI GKGCMC 1 cut(s) 836
BseXI GCAGC 2 cut(s) 808, 826
BsgI GTGCAG 1 cut(s) 280
BshFI GGCC 2 cut(s) 568, 925
BshNI GGYRCC 2 cut(s) 42, 581
BsiHKAI GWGCWC 1 cut(s) 737
BslFI GGGAC 2 cut(s) 101, 883
BslI CCNNNNNNNGG 2 cut(s) 204, 251
BsmAI GTCTC 2 cut(s) 112, 912
BsmFI GGGAC 2 cut(s) 101, 883
BsnI GGCC 2 cut(s) 568, 925
Bso31I GGTCTC 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 737, 836
Bsp143I GATC 7 cut(s) 130, 611, 631, 676, 781, 883, 952
BspANI GGCC 2 cut(s) 568, 925
BspCNI CTCAG 1 cut(s) 775
BspHI TCATGA 1 cut(s) 679
BspLI GGNNCC 2 cut(s) 44, 583
BspMAI CTGCAG 1 cut(s) 703
BspOI GCTAGC 1 cut(s) 689
BspPI GGATC 2 cut(s) 619, 684
BspT107I GGYRCC 2 cut(s) 42, 581
BspTNI GGTCTC 1 cut(s) 112
BsrDI GCAATG 1 cut(s) 817
BsrI ACTGG 2 cut(s) 162, 926
BssECI CCNNGG 1 cut(s) 804
BssMI GATC 7 cut(s) 130, 611, 631, 676, 781, 883, 952
Bst2UI CCWGG 3 cut(s) 252, 806, 946
Bst4CI ACNGT 3 cut(s) 63, 323, 353
Bst6I CTCTTC 2 cut(s) 178, 188
BstC8I GCNNGC 1 cut(s) 687
BstDEI CTNAG 2 cut(s) 315, 762
BstF5I GGATG 3 cut(s) 120, 752, 814
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 7 cut(s) 133, 614, 634, 679, 784, 886, 955
BstMAI GTCTC 2 cut(s) 112, 912
BstMBI GATC 7 cut(s) 130, 611, 631, 676, 781, 883, 952
BstMWI GCNNNNNNNGC 1 cut(s) 732
BstNI CCWGG 3 cut(s) 252, 806, 946
BstSCI CCNGG 3 cut(s) 250, 804, 944
BstSFI CTRYAG 1 cut(s) 699
BstSLI GKGCMC 1 cut(s) 836
BstV1I GCAGC 2 cut(s) 808, 826
BstV2I GAAGAC 2 cut(s) 160, 699
BstX2I RGATCY 1 cut(s) 611
BstXI CCANNNNNNTGG 2 cut(s) 200, 914
BstYI RGATCY 1 cut(s) 611
BsuRI GGCC 2 cut(s) 568, 925
BtsCI GGATG 3 cut(s) 120, 752, 814
BtsIMutI CAGTG 2 cut(s) 68, 834
Cac8I GCNNGC 1 cut(s) 687
CciI TCATGA 1 cut(s) 679
CfoI GCGC 1 cut(s) 29
Csp6I GTAC 5 cut(s) 43, 100, 319, 442, 582
CviAII CATG 2 cut(s) 103, 680
CviQI GTAC 5 cut(s) 43, 100, 319, 442, 582
DdeI CTNAG 2 cut(s) 315, 762
DpnI GATC 7 cut(s) 132, 613, 633, 678, 783, 885, 954
DpnII GATC 7 cut(s) 130, 611, 631, 676, 781, 883, 952
DraI TTTAAA 1 cut(s) 148
DrdI GACNNNNNNGTC 1 cut(s) 895
DseDI GACNNNNNNGTC 1 cut(s) 895
Eam1104I CTCTTC 2 cut(s) 178, 188
EarI CTCTTC 2 cut(s) 178, 188
Ecl136II GAGCTC 1 cut(s) 735
Eco24I GRGCYC 1 cut(s) 737
Eco31I GGTCTC 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 735
EcoICRI GAGCTC 1 cut(s) 735
EcoRII CCWGG 3 cut(s) 250, 804, 944
EcoT38I GRGCYC 1 cut(s) 737
FaeI CATG 2 cut(s) 106, 683
FaqI GGGAC 2 cut(s) 101, 883
FatI CATG 2 cut(s) 102, 679
FauNDI CATATG 1 cut(s) 333
FbaI TGATCA 2 cut(s) 631, 883
Fnu4HI GCNGC 2 cut(s) 797, 815
FokI GGATG 3 cut(s) 107, 739, 821
FriOI GRGCYC 1 cut(s) 737
Fsp4HI GCNGC 2 cut(s) 797, 815
FspBI CTAG 2 cut(s) 564, 686
GlaI GCGC 1 cut(s) 28
GluI GCNGC 2 cut(s) 797, 815
GsuI CTGGAG 2 cut(s) 132, 420
HaeIII GGCC 2 cut(s) 568, 925
HhaI GCGC 1 cut(s) 29
Hin1II CATG 2 cut(s) 106, 683
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HindIII AAGCTT 2 cut(s) 372, 724
HinfI GANTC 5 cut(s) 114, 161, 180, 311, 704
HphI GGTGA 2 cut(s) 182, 499
Hpy166II GTNNAC 1 cut(s) 936
Hpy188I TCNGA 2 cut(s) 603, 888
Hpy188III TCNNGA 7 cut(s) 111, 177, 357, 437, 609, 680, 969
Hpy8I GTNNAC 1 cut(s) 936
HpyAV CCTTC 4 cut(s) 249, 495, 662, 700
HpyCH4III ACNGT 3 cut(s) 63, 323, 353
HpyCH4V TGCA 6 cut(s) 261, 337, 701, 713, 719, 959
HpyF10VI GCNNNNNNNGC 1 cut(s) 732
HpyF3I CTNAG 2 cut(s) 315, 762
Hsp92II CATG 2 cut(s) 106, 683
HspAI GCGC 1 cut(s) 27
KpnI GGTACC 2 cut(s) 46, 585
Ksp22I TGATCA 2 cut(s) 631, 883
Kzo9I GATC 7 cut(s) 130, 611, 631, 676, 781, 883, 952
LmnI GCTCC 1 cut(s) 740
Lsp1109I GCAGC 2 cut(s) 808, 826
MaeI CTAG 2 cut(s) 564, 686
MalI GATC 7 cut(s) 132, 613, 633, 678, 783, 885, 954
MboI GATC 7 cut(s) 130, 611, 631, 676, 781, 883, 952
MboII GAAGA 9 cut(s) 85, 165, 165, 175, 276, 369, 378, 644, 699
MflI RGATCY 1 cut(s) 611
MhlI GDGCHC 2 cut(s) 737, 836
MluCI AATT 2 cut(s) 34, 964
MlyI GAGTC 4 cut(s) 123, 155, 174, 713
MmeI TCCRAC 1 cut(s) 452
MroXI GAANNNNTTC 1 cut(s) 352
MseI TTAA 2 cut(s) 147, 728
MslI CAYNNNNRTG 2 cut(s) 822, 981
MspR9I CCNGG 3 cut(s) 252, 806, 946
MvaI CCWGG 3 cut(s) 252, 806, 946
MwoI GCNNNNNNNGC 1 cut(s) 732
NdeI CATATG 1 cut(s) 333
NdeII GATC 7 cut(s) 130, 611, 631, 676, 781, 883, 952
NheI GCTAGC 1 cut(s) 685
NlaIII CATG 2 cut(s) 106, 683
NlaIV GGNNCC 2 cut(s) 44, 583
PagI TCATGA 1 cut(s) 679
PdmI GAANNNNTTC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 311
PkrI GCNGC 2 cut(s) 798, 816
PleI GAGTC 4 cut(s) 122, 155, 174, 712
PpsI GAGTC 4 cut(s) 122, 155, 174, 712
Psp124BI GAGCTC 1 cut(s) 737
Psp6I CCWGG 3 cut(s) 250, 804, 944
PspGI CCWGG 3 cut(s) 250, 804, 944
PspN4I GGNNCC 2 cut(s) 44, 583
PstI CTGCAG 1 cut(s) 703
PsuI RGATCY 1 cut(s) 611
RsaI GTAC 5 cut(s) 44, 101, 320, 443, 583
RsaNI GTAC 5 cut(s) 43, 100, 319, 442, 582
RseI CAYNNNNRTG 2 cut(s) 822, 981
SacI GAGCTC 1 cut(s) 737
SaqAI TTAA 2 cut(s) 147, 728
SatI GCNGC 2 cut(s) 797, 815
Sau3AI GATC 7 cut(s) 130, 611, 631, 676, 781, 883, 952
ScaI AGTACT 1 cut(s) 320
SchI GAGTC 4 cut(s) 123, 155, 174, 713
ScrFI CCNGG 3 cut(s) 252, 806, 946
SduI GDGCHC 2 cut(s) 737, 836
SfcI CTRYAG 1 cut(s) 699
SmiMI CAYNNNNRTG 2 cut(s) 822, 981
Sse9I AATT 2 cut(s) 34, 964
SspMI CTAG 2 cut(s) 564, 686
SstI GAGCTC 1 cut(s) 737
StyD4I CCNGG 3 cut(s) 250, 804, 944
TaaI ACNGT 3 cut(s) 63, 323, 353
TasI AATT 2 cut(s) 34, 964
TatI WGTACW 3 cut(s) 99, 318, 441
TfiI GAWTC 1 cut(s) 311
Tru1I TTAA 2 cut(s) 147, 728
Tru9I TTAA 2 cut(s) 147, 728
TscAI CASTG 2 cut(s) 68, 841
TseI GCWGC 2 cut(s) 796, 814
TspDTI ATGAA 3 cut(s) 528, 531, 965
TspRI CASTG 2 cut(s) 68, 841
XcmI CCANNNNNNNNNTGG 1 cut(s) 911
XmnI GAANNNNTTC 1 cut(s) 352
XspI CTAG 2 cut(s) 564, 686
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.