FvH4_6g34730

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013899
Physical Location & Seq
Reverse (-)
27401274 .. 27403523
2250 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g34730.t2

Sequence Viewer

Length: 987 bp
ATGATGAGTGGGGGAAGTCCAAGTAGTGCAAGGAATTTCAGGTACCCTTTCACAGCAACACAATGGCAAGAGCTAGAGCATCAAGCTCTCATCTTCAAGTACATGGTCTCTGGAGTCCCCGTCCCAACTGATCTTGTCTATTCCTTTAAAAGAAGACTGGATTCCTCAATGTCTTCCAGACTCTTCCCTCATCACCCTTTTGGGTGGGGTTGCTATGATATGGGGTTTGGCAGAAAGATAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGTAAAAAATGGAGGTGTTCAAAGGAAGCATACCCAGATTCTAAGTACTGTGAGAGGCATATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGCTTCTTCTAGTTCTTCTACTACAAACACTACTCCTAATAGTGATACTATTCCCACACCTCCAGACTACAACCCTGCTTCAATCCACAAAAACCTCTCCAAAACCTCCCCTTCAATGTTCTCCTCATCTTTCAGCAATGAAACACCTCAAACCCAACACCAAAGTTCATCTCTTTATCCATTCCTTTCTAGGCCACAGGGTTCTAATACCAACCCTCAACTCTTTCTCAACTCTGGATCTTATGTTAATGAAGCTGATCACAGAGATTACAGGTATCTTCAAGGAACAAAGGAAGGTGTGGATCATGAGCTAGCCTTCTTTCCTGCAGAGTCTTCTGAAAATGCAAGAAGCTTTATGAGCTCCTACAAAGGGTACTCATCCCAGTCTCAGTTCCAAAGCCTCACAGAACATTATCCACAGCAACAATCCCAGGATGAGCAGCATTGCTATGTTTTGGGCACTGATTTCAAATCAAGCAGACCAATGAAAATAGAGAATAAAGAAGCTGATCAGACCCAAAAGTCCCTCCACCATTTCTTTGGAGACTGGCCTCCAAAGTCCACAGACACCTGGCTGGATCTTGCACCCAATTCCAGACTTCATCGTGATGGTTGA

Protein Analysis

329

Amino Acids

37.54

Weight (kDa)

8.83

Isoelectric Point (pI)

63.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRC PF08879 9 - 51 2.2e-21 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13960
fragaria_vesca FvH4_6g34730 FvH4_6g34730 FvH4_6g34730
malus_domestica MD09G1183300.v1.1
prunus_persica Prupe.3G041800_v2.0.a1
pyrus_communis pycom09g10100
rosa_chinensis RchiOBHm_Chr2g0145381
rosa_laevigata RLG00000020139
rosa_multiflora Rmu_sc0001298.1_g000050
rosa_roxburghii Rroxscaffold_2G00100740
rosa_rugosa Rorug02G0391800
rosa_samantha Rh2AG445100 Rh2BG455900 Rh2CG431900 Rh2DG465800
rosa_wichuraiana Rw2G036350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 892
Acc65I GGTACC 1 cut(s) 42
AccB1I GGYRCC 1 cut(s) 42
AclWI GGATC 3 cut(s) 616, 681, 957
AcsI RAATTY 1 cut(s) 34
AfaI GTAC 4 cut(s) 44, 101, 320, 746
AfiI CCNNNNNNNGG 2 cut(s) 251, 741
AgsI TTSAA 7 cut(s) 97, 294, 357, 453, 486, 653, 841
AjnI CCWGG 3 cut(s) 250, 801, 941
AluBI AGCT 8 cut(s) 73, 86, 374, 626, 682, 723, 732, 878
AluI AGCT 8 cut(s) 73, 86, 374, 626, 682, 723, 732, 878
Alw21I GWGCWC 1 cut(s) 734
Alw26I GTCTC 3 cut(s) 112, 762, 909
AlwI GGATC 3 cut(s) 616, 681, 957
AoxI GGCC 2 cut(s) 563, 920
ApeKI GCWGC 1 cut(s) 811
ApoI RAATTY 1 cut(s) 34
Asp700I GAANNNNTTC 1 cut(s) 352
Asp718I GGTACC 1 cut(s) 42
AsuHPI GGTGA 1 cut(s) 185
AsuNHI GCTAGC 1 cut(s) 682
BaeGI GKGCMC 1 cut(s) 833
BanI GGYRCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 734
BbsI GAAGAC 3 cut(s) 160, 165, 696
Bbv12I GWGCWC 1 cut(s) 734
BbvI GCAGC 1 cut(s) 823
BccI CCATC 2 cut(s) 266, 974
BciT130I CCWGG 3 cut(s) 252, 803, 943
BclI TGATCA 2 cut(s) 628, 880
BcoDI GTCTC 3 cut(s) 112, 762, 909
BfaI CTAG 4 cut(s) 74, 381, 561, 683
BfmI CTRYAG 1 cut(s) 696
BisI GCNGC 1 cut(s) 812
BlsI GCNGC 1 cut(s) 813
BmcAI AGTACT 1 cut(s) 320
Bme1390I CCNGG 3 cut(s) 252, 803, 943
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 3 cut(s) 252, 803, 943
BmrI ACTGGG 1 cut(s) 748
BmsI GCATC 1 cut(s) 88
BmtI GCTAGC 1 cut(s) 686
BmuI ACTGGG 1 cut(s) 748
BpiI GAAGAC 3 cut(s) 160, 165, 696
BpmI CTGGAG 2 cut(s) 132, 417
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 801
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 741
Bse1I ACTGG 3 cut(s) 162, 754, 923
Bse3DI GCAATG 2 cut(s) 514, 814
BseBI CCWGG 3 cut(s) 252, 803, 943
BseDI CCNNGG 1 cut(s) 801
BseGI GGATG 2 cut(s) 749, 811
BseLI CCNNNNNNNGG 2 cut(s) 251, 741
BseMI GCAATG 2 cut(s) 514, 814
BseMII CTCAG 1 cut(s) 773
BseNI ACTGG 3 cut(s) 162, 754, 923
BseRI GAGGAG 1 cut(s) 484
BseSI GKGCMC 1 cut(s) 833
BseXI GCAGC 1 cut(s) 823
BsgI GTGCAG 1 cut(s) 280
BshFI GGCC 2 cut(s) 565, 922
BshNI GGYRCC 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 734
BslFI GGGAC 3 cut(s) 101, 107, 880
BslI CCNNNNNNNGG 2 cut(s) 251, 741
BsmAI GTCTC 3 cut(s) 112, 762, 909
BsmFI GGGAC 3 cut(s) 101, 107, 880
BsnI GGCC 2 cut(s) 565, 922
Bso31I GGTCTC 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 734, 833
Bsp143I GATC 6 cut(s) 130, 608, 628, 673, 880, 949
BspANI GGCC 2 cut(s) 565, 922
BspCNI CTCAG 1 cut(s) 772
BspHI TCATGA 1 cut(s) 676
BspLI GGNNCC 1 cut(s) 44
BspMAI CTGCAG 1 cut(s) 700
BspOI GCTAGC 1 cut(s) 686
BspPI GGATC 3 cut(s) 616, 681, 957
BspT107I GGYRCC 1 cut(s) 42
BspTNI GGTCTC 1 cut(s) 112
BsrDI GCAATG 2 cut(s) 514, 814
BsrI ACTGG 3 cut(s) 162, 754, 923
BssECI CCNNGG 1 cut(s) 801
BssMI GATC 6 cut(s) 130, 608, 628, 673, 880, 949
Bst2UI CCWGG 3 cut(s) 252, 803, 943
Bst4CI ACNGT 2 cut(s) 323, 353
Bst6I CTCTTC 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 684
BstDEI CTNAG 2 cut(s) 315, 759
BstF5I GGATG 2 cut(s) 749, 811
BstKTI GATC 6 cut(s) 133, 611, 631, 676, 883, 952
BstMAI GTCTC 3 cut(s) 112, 762, 909
BstMBI GATC 6 cut(s) 130, 608, 628, 673, 880, 949
BstMWI GCNNNNNNNGC 1 cut(s) 729
BstNI CCWGG 3 cut(s) 252, 803, 943
BstSCI CCNGG 3 cut(s) 250, 801, 941
BstSFI CTRYAG 1 cut(s) 696
BstSLI GKGCMC 1 cut(s) 833
BstV1I GCAGC 1 cut(s) 823
BstV2I GAAGAC 3 cut(s) 160, 165, 696
BstX2I RGATCY 2 cut(s) 608, 949
BstXI CCANNNNNNTGG 1 cut(s) 911
BstYI RGATCY 2 cut(s) 608, 949
BsuRI GGCC 2 cut(s) 565, 922
BtsCI GGATG 2 cut(s) 749, 811
BtsIMutI CAGTG 1 cut(s) 831
Cac8I GCNNGC 1 cut(s) 684
CciI TCATGA 1 cut(s) 676
Csp6I GTAC 4 cut(s) 43, 100, 319, 745
CviAII CATG 2 cut(s) 103, 677
CviQI GTAC 4 cut(s) 43, 100, 319, 745
DdeI CTNAG 2 cut(s) 315, 759
DpnI GATC 6 cut(s) 132, 610, 630, 675, 882, 951
DpnII GATC 6 cut(s) 130, 608, 628, 673, 880, 949
DraI TTTAAA 1 cut(s) 148
DrdI GACNNNNNNGTC 1 cut(s) 892
DseDI GACNNNNNNGTC 1 cut(s) 892
Eam1104I CTCTTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 732
Eco24I GRGCYC 1 cut(s) 734
Eco31I GGTCTC 1 cut(s) 112
Eco53kI GAGCTC 1 cut(s) 732
EcoICRI GAGCTC 1 cut(s) 732
EcoRII CCWGG 3 cut(s) 250, 801, 941
EcoT38I GRGCYC 1 cut(s) 734
FaeI CATG 2 cut(s) 106, 680
FaqI GGGAC 3 cut(s) 101, 107, 880
FatI CATG 2 cut(s) 102, 676
FauNDI CATATG 1 cut(s) 333
FbaI TGATCA 2 cut(s) 628, 880
Fnu4HI GCNGC 1 cut(s) 812
FokI GGATG 2 cut(s) 736, 818
FriOI GRGCYC 1 cut(s) 734
Fsp4HI GCNGC 1 cut(s) 812
FspBI CTAG 4 cut(s) 74, 381, 561, 683
GluI GCNGC 1 cut(s) 812
GsuI CTGGAG 2 cut(s) 132, 417
HaeIII GGCC 2 cut(s) 565, 922
Hin1II CATG 2 cut(s) 106, 680
HindIII AAGCTT 2 cut(s) 372, 721
HinfI GANTC 5 cut(s) 114, 161, 180, 311, 701
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 933
Hpy188I TCNGA 2 cut(s) 709, 885
Hpy188III TCNNGA 8 cut(s) 111, 177, 357, 434, 606, 677, 966, 977
Hpy8I GTNNAC 1 cut(s) 933
HpyAV CCTTC 4 cut(s) 249, 492, 659, 697
HpyCH4III ACNGT 2 cut(s) 323, 353
HpyCH4V TGCA 6 cut(s) 29, 261, 337, 698, 716, 956
HpyF10VI GCNNNNNNNGC 1 cut(s) 729
HpyF3I CTNAG 2 cut(s) 315, 759
Hsp92II CATG 2 cut(s) 106, 680
KpnI GGTACC 1 cut(s) 46
Ksp22I TGATCA 2 cut(s) 628, 880
Kzo9I GATC 6 cut(s) 130, 608, 628, 673, 880, 949
LmnI GCTCC 1 cut(s) 737
Lsp1109I GCAGC 1 cut(s) 823
LweI GCATC 1 cut(s) 88
MaeI CTAG 4 cut(s) 74, 381, 561, 683
MalI GATC 6 cut(s) 132, 610, 630, 675, 882, 951
MboI GATC 6 cut(s) 130, 608, 628, 673, 880, 949
MboII GAAGA 9 cut(s) 85, 165, 165, 175, 276, 369, 378, 641, 696
MflI RGATCY 2 cut(s) 608, 949
MhlI GDGCHC 2 cut(s) 734, 833
MluCI AATT 2 cut(s) 34, 961
MlyI GAGTC 3 cut(s) 123, 174, 710
MroXI GAANNNNTTC 1 cut(s) 352
MseI TTAA 2 cut(s) 147, 618
MslI CAYNNNNRTG 2 cut(s) 819, 978
MspR9I CCNGG 3 cut(s) 252, 803, 943
MvaI CCWGG 3 cut(s) 252, 803, 943
MwoI GCNNNNNNNGC 1 cut(s) 729
NdeI CATATG 1 cut(s) 333
NdeII GATC 6 cut(s) 130, 608, 628, 673, 880, 949
NheI GCTAGC 1 cut(s) 682
NlaIII CATG 2 cut(s) 106, 680
NlaIV GGNNCC 1 cut(s) 44
PagI TCATGA 1 cut(s) 676
PdmI GAANNNNTTC 1 cut(s) 352
PfeI GAWTC 2 cut(s) 161, 311
PkrI GCNGC 1 cut(s) 813
PleI GAGTC 3 cut(s) 122, 174, 709
PpsI GAGTC 3 cut(s) 122, 174, 709
Psp124BI GAGCTC 1 cut(s) 734
Psp6I CCWGG 3 cut(s) 250, 801, 941
PspGI CCWGG 3 cut(s) 250, 801, 941
PspN4I GGNNCC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 700
PsuI RGATCY 2 cut(s) 608, 949
RsaI GTAC 4 cut(s) 44, 101, 320, 746
RsaNI GTAC 4 cut(s) 43, 100, 319, 745
RseI CAYNNNNRTG 2 cut(s) 819, 978
SacI GAGCTC 1 cut(s) 734
SaqAI TTAA 2 cut(s) 147, 618
SatI GCNGC 1 cut(s) 812
Sau3AI GATC 6 cut(s) 130, 608, 628, 673, 880, 949
ScaI AGTACT 1 cut(s) 320
SchI GAGTC 3 cut(s) 123, 174, 710
ScrFI CCNGG 3 cut(s) 252, 803, 943
SduI GDGCHC 2 cut(s) 734, 833
SfaNI GCATC 1 cut(s) 88
SfcI CTRYAG 1 cut(s) 696
SmiMI CAYNNNNRTG 2 cut(s) 819, 978
Sse9I AATT 2 cut(s) 34, 961
SspMI CTAG 4 cut(s) 74, 381, 561, 683
SstI GAGCTC 1 cut(s) 734
StyD4I CCNGG 3 cut(s) 250, 801, 941
TaaI ACNGT 2 cut(s) 323, 353
TasI AATT 2 cut(s) 34, 961
TatI WGTACW 2 cut(s) 99, 318
TfiI GAWTC 2 cut(s) 161, 311
Tru1I TTAA 2 cut(s) 147, 618
Tru9I TTAA 2 cut(s) 147, 618
TscAI CASTG 1 cut(s) 838
TseI GCWGC 1 cut(s) 811
TspDTI ATGAA 5 cut(s) 525, 528, 636, 872, 962
TspRI CASTG 1 cut(s) 838
XapI RAATTY 1 cut(s) 34
XcmI CCANNNNNNNNNTGG 1 cut(s) 908
XmnI GAANNNNTTC 1 cut(s) 352
XspI CTAG 4 cut(s) 74, 381, 561, 683
ZrmI AGTACT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.