Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0013899

Physical Location & Seq

Genomic Coordinates Forward (+)

15790752 .. 15792881

Gene Structure 2130 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1183300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGATGAATGGAAATCCAAGTAGTGCAGCAAGAAATAGGTATCCCTTCACAGCAACTCAGTGGCAAGAGCTAGAACATCAAGCCCTAATCTTCAAGTACATGGCCTCAGGAGTCCCCATCCCCAATGACCTTGTCTACTCTTTCAAAAGAAGGTTGGACTCCTCCATTTCCTCAAGACTCTTCCCCCATCACCCCATGGGATGGGGGTGTTATGAGATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGGAGGTGCAGAAGAACAGATGGCAAAAAATGGAGGTGTTCAAAGGAAGCATATCCGGATTCCAAGTACTGCGAGAGGCACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCCTCTTCTTCTTCTGCATTATCATCTCCTACTGCGGCATCCACAGCAACAGCTGAGCACCTTTCTTCTCCTTCTGCCACCTCACCATCATCTTCCCTCCACAGAAACCTCTGCAAAACCTCCTCTTCTTCCTACACTCTCACTCCACTCTCCTCATCAATCTCCACTCAACAAACCAACCAGTCAAATTCATCTCTCTACCCTTTCCTTAATTATCCTTATTCTTCCTCCTCTTCCAGTTCTACCCCTCAGCTTTTTCTGAACTCTGCATCTTATTCAGATAAAGATTACAGGTATTTTCAAGGAGCAAAGGAAGGTGTGGATGAGCTAGCTTTCTTTCCAGATTCTTCAGCAAATGAAAGAAACTTATTAATGAATTCCTACAGAGGCTACTCCCCCACCCAACAATCACAGGAGGACCAACAGCAACATTGTTTTGTTTGGGGGACTGATTTCAAATCAGTTAAAACAGAGAAAGAATCAGCAGCAGCTGAATCCCAAAAGTCACTCCACCACTTCTTTGGAGAGTGGCAGCAGCCAGCCAAGAGCTCAGGAGACACCTGGCTTGATCTTGCTTCTAATTCTGGAGGTCCTAATGACGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

326

Amino Acids

36.26

Weight (kDa)

8.78

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	15 - 45	5.3e-14	QLQ
WRC	PF08879	81 - 123	3.2e-21	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13960
fragaria_vesca	FvH4_6g34730 FvH4_6g34730 FvH4_6g34730
malus_domestica	MD09G1183300.v1.1
prunus_persica	Prupe.3G041800_v2.0.a1
pyrus_communis	pycom09g10100
rosa_chinensis	RchiOBHm_Chr2g0145381
rosa_laevigata	RLG00000020139
rosa_multiflora	Rmu_sc0001298.1_g000050
rosa_roxburghii	Rroxscaffold_2G00100740
rosa_rugosa	Rorug02G0391800
rosa_samantha	Rh2AG445100 Rh2BG455900 Rh2CG431900 Rh2DG465800
rosa_wichuraiana	Rw2G036350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	201
AccI	GTMKAC	2 cut(s)	135, 237
AccIII	TCCGGA	1 cut(s)	304
AciI	CCGC	1 cut(s)	407
AcsI	RAATTY	2 cut(s)	559, 748
AcuI	CTGAAG	1 cut(s)	705
AfaI	GTAC	2 cut(s)	98, 317
AfiI	CCNNNNNNNGG	3 cut(s)	201, 248, 971
AgsI	TTSAA	6 cut(s)	94, 145, 291, 354, 674, 829
AjnI	CCWGG	2 cut(s)	247, 932
AluBI	AGCT	7 cut(s)	70, 425, 625, 700, 704, 863, 921
AluI	AGCT	7 cut(s)	70, 425, 625, 700, 704, 863, 921
Alw21I	GWGCWC	2 cut(s)	432, 923
Alw26I	GTCTC	1 cut(s)	921
AlwNI	CAGNNNCTG	1 cut(s)	863
Aor13HI	TCCGGA	1 cut(s)	304
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	5 cut(s)	26, 857, 860, 904, 907
ApoI	RAATTY	2 cut(s)	559, 748
AseI	ATTAAT	1 cut(s)	743
Asp700I	GAANNNNTTC	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	790, 962
AsuHPI	GGTGA	2 cut(s)	182, 447
AsuNHI	GCTAGC	1 cut(s)	700
AvaII	GGWCC	2 cut(s)	790, 962
AxyI	CCTNAGG	1 cut(s)	106
BanII	GRGCYC	1 cut(s)	923
Bbv12I	GWGCWC	2 cut(s)	432, 923
BbvCI	CCTCAGC	1 cut(s)	621
BbvI	GCAGC	5 cut(s)	38, 869, 872, 916, 919
BccI	CCATC	6 cut(s)	125, 195, 195, 211, 263, 466
BciT130I	CCWGG	2 cut(s)	249, 934
BciVI	GTATCC	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	921
BfaI	CTAG	2 cut(s)	71, 701
BfmI	CTRYAG	1 cut(s)	754
BfuI	GTATCC	1 cut(s)	51
BisI	GCNGC	6 cut(s)	27, 408, 858, 861, 905, 908
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	6 cut(s)	28, 409, 859, 862, 906, 909
BmcAI	AGTACT	1 cut(s)	317
Bme1390I	CCNGG	2 cut(s)	249, 934
Bme18I	GGWCC	2 cut(s)	790, 962
BmgT120I	GGNCC	2 cut(s)	790, 962
BmrFI	CCNGG	2 cut(s)	249, 934
BmsI	GCATC	2 cut(s)	419, 650
BmtI	GCTAGC	1 cut(s)	704
BpmI	CTGGAG	1 cut(s)	978
Bpu10I	CCTNAGC	2 cut(s)	621, 922
Bpu1102I	GCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	195, 248
BsaWI	WCCGGW	1 cut(s)	304
BsaXI	ACNNNNNCTCC	2 cut(s)	499, 529
Bsc4I	CCNNNNNNNGG	3 cut(s)	201, 248, 971
Bse1I	ACTGG	2 cut(s)	553, 609
Bse21I	CCTNAGG	1 cut(s)	106
BseAI	TCCGGA	1 cut(s)	304
BseBI	CCWGG	2 cut(s)	249, 934
BseDI	CCNNGG	2 cut(s)	195, 248
BseGI	GGATG	4 cut(s)	117, 206, 410, 700
BseLI	CCNNNNNNNGG	3 cut(s)	201, 248, 971
BseMII	CTCAG	5 cut(s)	71, 120, 417, 635, 936
BseNI	ACTGG	2 cut(s)	553, 609
BseRI	GAGGAG	4 cut(s)	151, 484, 514, 592
BseXI	GCAGC	5 cut(s)	38, 869, 872, 916, 919
BsgI	GTGCAG	2 cut(s)	45, 277
BshFI	GGCC	1 cut(s)	104
BsiHKAI	GWGCWC	2 cut(s)	432, 923
BsiSI	CCGG	1 cut(s)	305
BslFI	GGGAC	2 cut(s)	98, 832
BslI	CCNNNNNNNGG	3 cut(s)	201, 248, 971
BsmAI	GTCTC	1 cut(s)	921
BsmFI	GGGAC	2 cut(s)	98, 832
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	432, 923
Bsp13I	TCCGGA	1 cut(s)	304
Bsp143I	GATC	1 cut(s)	940
Bsp1720I	GCTNAGC	1 cut(s)	426
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	1 cut(s)	407
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	5 cut(s)	70, 119, 418, 634, 935
BspEI	TCCGGA	1 cut(s)	304
BspOI	GCTAGC	1 cut(s)	704
BsrI	ACTGG	2 cut(s)	553, 609
BssECI	CCNNGG	2 cut(s)	195, 248
BssMI	GATC	1 cut(s)	940
BssT1I	CCWWGG	1 cut(s)	195
Bst2UI	CCWGG	2 cut(s)	249, 934
Bst4CI	ACNGT	2 cut(s)	350, 974
Bst6I	CTCTTC	4 cut(s)	185, 382, 502, 610
BstC8I	GCNNGC	2 cut(s)	702, 912
BstDEI	CTNAG	5 cut(s)	57, 106, 426, 621, 922
BstDSI	CCRYGG	1 cut(s)	195
BstF5I	GGATG	4 cut(s)	117, 206, 410, 700
BstKTI	GATC	1 cut(s)	943
BstMAI	GTCTC	1 cut(s)	921
BstMBI	GATC	1 cut(s)	940
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	2 cut(s)	249, 934
BstNSI	RCATGY	1 cut(s)	334
BstSCI	CCNGG	2 cut(s)	247, 932
BstSFI	CTRYAG	1 cut(s)	754
BstV1I	GCAGC	5 cut(s)	38, 869, 872, 916, 919
BstXI	CCANNNNNNTGG	1 cut(s)	893
Bsu36I	CCTNAGG	1 cut(s)	106
BsuI	GTATCC	1 cut(s)	51
BsuRI	GGCC	1 cut(s)	104
BtgI	CCRYGG	1 cut(s)	195
BtsCI	GGATG	4 cut(s)	117, 206, 410, 700
BtsIMutI	CAGTG	1 cut(s)	65
Cac8I	GCNNGC	2 cut(s)	702, 912
CaiI	CAGNNNCTG	1 cut(s)	863
Cfr13I	GGNCC	2 cut(s)	790, 962
Csp6I	GTAC	2 cut(s)	97, 316
CviAII	CATG	3 cut(s)	100, 196, 331
CviQI	GTAC	2 cut(s)	97, 316
DdeI	CTNAG	5 cut(s)	57, 106, 426, 621, 922
DpnI	GATC	1 cut(s)	942
DpnII	GATC	1 cut(s)	940
Eam1104I	CTCTTC	4 cut(s)	185, 382, 502, 610
EarI	CTCTTC	4 cut(s)	185, 382, 502, 610
Ecl136II	GAGCTC	1 cut(s)	921
Eco130I	CCWWGG	1 cut(s)	195
Eco24I	GRGCYC	1 cut(s)	923
Eco47I	GGWCC	2 cut(s)	790, 962
Eco53kI	GAGCTC	1 cut(s)	921
Eco57I	CTGAAG	1 cut(s)	705
Eco81I	CCTNAGG	1 cut(s)	106
EcoICRI	GAGCTC	1 cut(s)	921
EcoO109I	RGGNCCY	1 cut(s)	962
EcoRI	GAATTC	1 cut(s)	748
EcoRII	CCWGG	2 cut(s)	247, 932
EcoT14I	CCWWGG	1 cut(s)	195
EcoT38I	GRGCYC	1 cut(s)	923
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	3 cut(s)	103, 199, 334
FaiI	YATR	5 cut(s)	101, 197, 213, 301, 332
FaqI	GGGAC	2 cut(s)	98, 832
FatI	CATG	3 cut(s)	99, 195, 330
FblI	GTMKAC	2 cut(s)	135, 237
Fnu4HI	GCNGC	6 cut(s)	27, 408, 858, 861, 905, 908
FokI	GGATG	4 cut(s)	104, 213, 397, 707
FriOI	GRGCYC	1 cut(s)	923
Fsp4HI	GCNGC	6 cut(s)	27, 408, 858, 861, 905, 908
FspBI	CTAG	2 cut(s)	71, 701
GluI	GCNGC	6 cut(s)	27, 408, 858, 861, 905, 908
GsuI	CTGGAG	1 cut(s)	978
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	305
Hin1II	CATG	3 cut(s)	103, 199, 334
HinfI	GANTC	7 cut(s)	111, 158, 177, 308, 716, 851, 866
HpaII	CCGG	1 cut(s)	305
HphI	GGTGA	2 cut(s)	182, 447
Hpy166II	GTNNAC	2 cut(s)	136, 238
Hpy188I	TCNGA	2 cut(s)	633, 652
Hpy188III	TCNNGA	7 cut(s)	108, 174, 305, 354, 713, 924, 957
Hpy8I	GTNNAC	2 cut(s)	136, 238
HpyAV	CCTTC	4 cut(s)	55, 144, 453, 680
HpyCH4III	ACNGT	2 cut(s)	350, 974
HpyCH4V	TGCA	6 cut(s)	26, 258, 334, 389, 486, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	5 cut(s)	57, 106, 426, 621, 922
Hsp92II	CATG	3 cut(s)	103, 199, 334
Kpn2I	TCCGGA	1 cut(s)	304
Kzo9I	GATC	1 cut(s)	940
LmnI	GCTCC	1 cut(s)	677
Lsp1109I	GCAGC	5 cut(s)	38, 869, 872, 916, 919
LweI	GCATC	2 cut(s)	419, 650
MaeI	CTAG	2 cut(s)	71, 701
MaeIII	GTNAC	1 cut(s)	876
MalI	GATC	1 cut(s)	942
MboI	GATC	1 cut(s)	940
MhlI	GDGCHC	2 cut(s)	432, 923
MluCI	AATT	4 cut(s)	559, 583, 748, 952
MlyI	GAGTC	3 cut(s)	120, 152, 171
MmeI	TCCRAC	1 cut(s)	135
MroI	TCCGGA	1 cut(s)	304
MroXI	GAANNNNTTC	1 cut(s)	349
MseI	TTAA	4 cut(s)	582, 743, 837, 976
MspA1I	CMGCKG	2 cut(s)	425, 863
MspI	CCGG	1 cut(s)	305
MspR9I	CCNGG	2 cut(s)	249, 934
MvaI	CCWGG	2 cut(s)	249, 934
MwoI	GCNNNNNNNGC	1 cut(s)	416
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	1 cut(s)	940
NheI	GCTAGC	1 cut(s)	700
NlaIII	CATG	3 cut(s)	103, 199, 334
NmuCI	GTSAC	1 cut(s)	876
NspI	RCATGY	1 cut(s)	334
PdmI	GAANNNNTTC	1 cut(s)	349
PfeI	GAWTC	4 cut(s)	308, 716, 851, 866
PflFI	GACNNNGTC	1 cut(s)	131
PflMI	CCANNNNNTGG	1 cut(s)	201
PkrI	GCNGC	6 cut(s)	28, 409, 859, 862, 906, 909
PleI	GAGTC	3 cut(s)	119, 152, 171
PpsI	GAGTC	3 cut(s)	119, 152, 171
PpuMI	RGGWCCY	1 cut(s)	962
PshBI	ATTAAT	1 cut(s)	743
Psp124BI	GAGCTC	1 cut(s)	923
Psp5II	RGGWCCY	1 cut(s)	962
Psp6I	CCWGG	2 cut(s)	247, 932
PspGI	CCWGG	2 cut(s)	247, 932
PspPI	GGNCC	2 cut(s)	790, 962
PspPPI	RGGWCCY	1 cut(s)	962
PstNI	CAGNNNCTG	1 cut(s)	863
PsyI	GACNNNGTC	1 cut(s)	131
PvuII	CAGCTG	2 cut(s)	425, 863
RsaI	GTAC	2 cut(s)	98, 317
RsaNI	GTAC	2 cut(s)	97, 316
SacI	GAGCTC	1 cut(s)	923
SaqAI	TTAA	4 cut(s)	582, 743, 837, 976
SatI	GCNGC	6 cut(s)	27, 408, 858, 861, 905, 908
Sau3AI	GATC	1 cut(s)	940
Sau96I	GGNCC	2 cut(s)	790, 962
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	3 cut(s)	120, 152, 171
ScrFI	CCNGG	2 cut(s)	249, 934
SduI	GDGCHC	2 cut(s)	432, 923
SfaNI	GCATC	2 cut(s)	419, 650
SfcI	CTRYAG	1 cut(s)	754
SinI	GGWCC	2 cut(s)	790, 962
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
Sse9I	AATT	4 cut(s)	559, 583, 748, 952
SsiI	CCGC	1 cut(s)	407
SspMI	CTAG	2 cut(s)	71, 701
SstI	GAGCTC	1 cut(s)	923
StyD4I	CCNGG	2 cut(s)	247, 932
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	2 cut(s)	350, 974
TasI	AATT	4 cut(s)	559, 583, 748, 952
TatI	WGTACW	2 cut(s)	96, 315
TauI	GCSGC	1 cut(s)	410
TfiI	GAWTC	4 cut(s)	308, 716, 851, 866
Tru1I	TTAA	4 cut(s)	582, 743, 837, 976
Tru9I	TTAA	4 cut(s)	582, 743, 837, 976
TscAI	CASTG	1 cut(s)	65
TseFI	GTSAC	1 cut(s)	876
TseI	GCWGC	5 cut(s)	26, 857, 860, 904, 907
Tsp45I	GTSAC	1 cut(s)	876
TspDTI	ATGAA	4 cut(s)	20, 552, 744, 761
TspRI	CASTG	1 cut(s)	65
Tth111I	GACNNNGTC	1 cut(s)	131
Van91I	CCANNNNNTGG	1 cut(s)	201
VpaK11BI	GGWCC	2 cut(s)	790, 962
VspI	ATTAAT	1 cut(s)	743
XapI	RAATTY	2 cut(s)	559, 748
XceI	RCATGY	1 cut(s)	334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	890
XmiI	GTMKAC	2 cut(s)	135, 237
XmnI	GAANNNNTTC	1 cut(s)	349
XspI	CTAG	2 cut(s)	71, 701
ZrmI	AGTACT	1 cut(s)	317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.