Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013899

Physical Location & Seq

Genomic Coordinates Forward (+)

22560547 .. 22562404

Gene Structure 1858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00100740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGCATAAAAAAAGAAATCAATGCTCTCATCCTCTTCTGCTTCTTCTTCTTCTTCTTATTAAATCCCCAGGGCTGTTGTCTCTCTTTTTCATTGTGGGATCAAAAATGATGAGTGGAGGAAATCCGAGTAGCGCAAGGAATTACAGGTACCCTTTCACAGCAACACAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTTCAAGTACATGGTCTCTGGAGTCCCCATCCCAACTGATCTTGTCTATTCCTTTAAAAGACGACTGGACTCCTCAATCTCTTCCAGACTCTTCCCTCACCACCCTTTTGGGTGGGGTTGCTATGATATGGGCTTTGGCAGAAAGATAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGTAAAAAATGGAGGTGTTCAAAGGAAGCATACCCAGATTCTAAGTACTGTGAGAGGCATATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGCTTCTTCTAGTTCTTCTAATACAAACACTACTCCTAATAATAATAATACTATTCCAACACCTCCAGAGTACAACCCTGGTTCAATCCACAAAAACCTCTCCAAAACCTCCCCTTCAATGTTTTCGTCATCTTTCACCAATGAAACACCTCACACCCAACACCAAAGTTCATCTCTTTATCCATTCCTTTCTAGGCCACAGGGTTCTGGTACCAACCCTCAACTTTTTCTGAACTCTGGATCTTATGTTAGTGAAGCTGATCACAGAGATTACAGGTATCTTCAAGGAACAAAGGAAGGTGTGGATCATGAGCTAGCCTTCTTTCCTGCAGAGTCTTCTGCAAATGCAAGAAGCTTAATGAGCTCCTATAAAGGCTACTCATCCCAATCTCAGTTTCAAAGCCTCACAGATCATTATCCACAGCAGCAATCCCAGGATGAGCAGCATTGCTATGTTTTGGGCACTGATTTCAAATCAAGCAGACCAATCAAAACAGAGAATAAAGAAGCTGATCAGACCCAAAAGTCCCTCCACCATTTCTTTGGAGACTGGCCTCCAAAGTCCACAGACACCTGGCTTGATCTTGCACCCAATTCCAGACTTCATAATGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

364

Amino Acids

41.43

Weight (kDa)

9.29

Isoelectric Point (pI)

57.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	51 - 81	2.6e-14	QLQ
WRC	PF08879	117 - 159	3.7e-21	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13960
fragaria_vesca	FvH4_6g34730 FvH4_6g34730 FvH4_6g34730
malus_domestica	MD09G1183300.v1.1
prunus_persica	Prupe.3G041800_v2.0.a1
pyrus_communis	pycom09g10100
rosa_chinensis	RchiOBHm_Chr2g0145381
rosa_laevigata	RLG00000020139
rosa_multiflora	Rmu_sc0001298.1_g000050
rosa_roxburghii	Rroxscaffold_2G00100740
rosa_rugosa	Rorug02G0391800
rosa_samantha	Rh2AG445100 Rh2BG455900 Rh2CG431900 Rh2DG465800
rosa_wichuraiana	Rw2G036350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1000
Acc65I	GGTACC	2 cut(s)	147, 686
AccB1I	GGYRCC	2 cut(s)	147, 686
AclWI	GGATC	3 cut(s)	106, 724, 789
AfaI	GTAC	5 cut(s)	149, 206, 425, 548, 688
AfiI	CCNNNNNNNGG	1 cut(s)	356
AgsI	TTSAA	9 cut(s)	182, 202, 399, 462, 561, 594, 761, 875, 949
AjnI	CCWGG	5 cut(s)	67, 355, 553, 909, 1049
AjuI	GAANNNNNNNTTGG	2 cut(s)	855, 887
AluBI	AGCT	8 cut(s)	178, 191, 479, 734, 790, 831, 840, 986
AluI	AGCT	8 cut(s)	178, 191, 479, 734, 790, 831, 840, 986
Alw21I	GWGCWC	1 cut(s)	842
Alw26I	GTCTC	3 cut(s)	84, 217, 1017
AlwI	GGATC	3 cut(s)	106, 724, 789
AoxI	GGCC	2 cut(s)	671, 1028
ApeKI	GCWGC	2 cut(s)	901, 919
Asp700I	GAANNNNTTC	1 cut(s)	457
Asp718I	GGTACC	2 cut(s)	147, 686
AspLEI	GCGC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	287, 604
AsuNHI	GCTAGC	1 cut(s)	790
BaeGI	GKGCMC	1 cut(s)	941
BanI	GGYRCC	2 cut(s)	147, 686
BanII	GRGCYC	1 cut(s)	842
BbsI	GAAGAC	1 cut(s)	804
Bbv12I	GWGCWC	1 cut(s)	842
BbvI	GCAGC	2 cut(s)	913, 931
BccI	CCATC	3 cut(s)	233, 371, 1082
BciT130I	CCWGG	5 cut(s)	69, 357, 555, 911, 1051
BclI	TGATCA	2 cut(s)	736, 988
BcoDI	GTCTC	3 cut(s)	84, 217, 1017
BfaI	CTAG	3 cut(s)	486, 669, 791
BfmI	CTRYAG	1 cut(s)	804
BisI	GCNGC	2 cut(s)	902, 920
BlsI	GCNGC	2 cut(s)	903, 921
BmcAI	AGTACT	1 cut(s)	425
Bme1390I	CCNGG	5 cut(s)	69, 357, 555, 911, 1051
BmiI	GGNNCC	2 cut(s)	149, 688
BmrFI	CCNGG	5 cut(s)	69, 357, 555, 911, 1051
BmtI	GCTAGC	1 cut(s)	794
BpiI	GAAGAC	1 cut(s)	804
BpmI	CTGGAG	2 cut(s)	237, 525
BsaBI	GATNNNNATC	1 cut(s)	891
BsaI	GGTCTC	1 cut(s)	217
BsaJI	CCNNGG	4 cut(s)	67, 68, 553, 909
Bsc4I	CCNNNNNNNGG	1 cut(s)	356
Bse1I	ACTGG	2 cut(s)	267, 1031
Bse3DI	GCAATG	1 cut(s)	922
Bse8I	GATNNNNATC	1 cut(s)	891
BseBI	CCWGG	5 cut(s)	69, 357, 555, 911, 1051
BseDI	CCNNGG	4 cut(s)	67, 68, 553, 909
BseGI	GGATG	4 cut(s)	28, 225, 857, 919
BseJI	GATNNNNATC	1 cut(s)	891
BseLI	CCNNNNNNNGG	1 cut(s)	356
BseMI	GCAATG	1 cut(s)	922
BseMII	CTCAG	1 cut(s)	881
BseNI	ACTGG	2 cut(s)	267, 1031
BseRI	GAGGAG	1 cut(s)	259
BseSI	GKGCMC	1 cut(s)	941
BseXI	GCAGC	2 cut(s)	913, 931
BsgI	GTGCAG	1 cut(s)	385
BshFI	GGCC	2 cut(s)	673, 1030
BshNI	GGYRCC	2 cut(s)	147, 686
BsiHKAI	GWGCWC	1 cut(s)	842
BslFI	GGGAC	2 cut(s)	206, 988
BslI	CCNNNNNNNGG	1 cut(s)	356
BsmAI	GTCTC	3 cut(s)	84, 217, 1017
BsmFI	GGGAC	2 cut(s)	206, 988
BsnI	GGCC	2 cut(s)	673, 1030
Bso31I	GGTCTC	1 cut(s)	217
Bsp1286I	GDGCHC	2 cut(s)	842, 941
Bsp143I	GATC	8 cut(s)	98, 235, 716, 736, 781, 886, 988, 1057
BspANI	GGCC	2 cut(s)	673, 1030
BspCNI	CTCAG	1 cut(s)	880
BspHI	TCATGA	1 cut(s)	784
BspLI	GGNNCC	2 cut(s)	149, 688
BspMAI	CTGCAG	1 cut(s)	808
BspOI	GCTAGC	1 cut(s)	794
BspPI	GGATC	3 cut(s)	106, 724, 789
BspT107I	GGYRCC	2 cut(s)	147, 686
BspTNI	GGTCTC	1 cut(s)	217
BsrDI	GCAATG	1 cut(s)	922
BsrI	ACTGG	2 cut(s)	267, 1031
BssECI	CCNNGG	4 cut(s)	67, 68, 553, 909
BssMI	GATC	8 cut(s)	98, 235, 716, 736, 781, 886, 988, 1057
Bst2UI	CCWGG	5 cut(s)	69, 357, 555, 911, 1051
Bst4CI	ACNGT	3 cut(s)	168, 428, 458
Bst6I	CTCTTC	3 cut(s)	39, 283, 293
BstC8I	GCNNGC	1 cut(s)	792
BstDEI	CTNAG	2 cut(s)	420, 867
BstF5I	GGATG	4 cut(s)	28, 225, 857, 919
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	8 cut(s)	101, 238, 719, 739, 784, 889, 991, 1060
BstMAI	GTCTC	3 cut(s)	84, 217, 1017
BstMBI	GATC	8 cut(s)	98, 235, 716, 736, 781, 886, 988, 1057
BstMWI	GCNNNNNNNGC	1 cut(s)	837
BstNI	CCWGG	5 cut(s)	69, 357, 555, 911, 1051
BstSCI	CCNGG	5 cut(s)	67, 355, 553, 909, 1049
BstSFI	CTRYAG	1 cut(s)	804
BstSLI	GKGCMC	1 cut(s)	941
BstV1I	GCAGC	2 cut(s)	913, 931
BstV2I	GAAGAC	1 cut(s)	804
BstX2I	RGATCY	1 cut(s)	716
BstXI	CCANNNNNNTGG	2 cut(s)	305, 1019
BstYI	RGATCY	1 cut(s)	716
BsuRI	GGCC	2 cut(s)	673, 1030
BtsCI	GGATG	4 cut(s)	28, 225, 857, 919
BtsIMutI	CAGTG	2 cut(s)	173, 939
Cac8I	GCNNGC	1 cut(s)	792
CciI	TCATGA	1 cut(s)	784
CfoI	GCGC	1 cut(s)	134
Csp6I	GTAC	5 cut(s)	148, 205, 424, 547, 687
CviAII	CATG	2 cut(s)	208, 785
CviQI	GTAC	5 cut(s)	148, 205, 424, 547, 687
DdeI	CTNAG	2 cut(s)	420, 867
DpnI	GATC	8 cut(s)	100, 237, 718, 738, 783, 888, 990, 1059
DpnII	GATC	8 cut(s)	98, 235, 716, 736, 781, 886, 988, 1057
DraI	TTTAAA	1 cut(s)	253
DrdI	GACNNNNNNGTC	1 cut(s)	1000
DseDI	GACNNNNNNGTC	1 cut(s)	1000
Eam1104I	CTCTTC	3 cut(s)	39, 283, 293
EarI	CTCTTC	3 cut(s)	39, 283, 293
Ecl136II	GAGCTC	1 cut(s)	840
Eco24I	GRGCYC	1 cut(s)	842
Eco31I	GGTCTC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	840
EcoICRI	GAGCTC	1 cut(s)	840
EcoRII	CCWGG	5 cut(s)	67, 355, 553, 909, 1049
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	842
FaeI	CATG	2 cut(s)	211, 788
FaqI	GGGAC	2 cut(s)	206, 988
FatI	CATG	2 cut(s)	207, 784
FauNDI	CATATG	1 cut(s)	438
FbaI	TGATCA	2 cut(s)	736, 988
Fnu4HI	GCNGC	2 cut(s)	902, 920
FokI	GGATG	4 cut(s)	15, 212, 844, 926
FriOI	GRGCYC	1 cut(s)	842
Fsp4HI	GCNGC	2 cut(s)	902, 920
FspBI	CTAG	3 cut(s)	486, 669, 791
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	2 cut(s)	902, 920
GsuI	CTGGAG	2 cut(s)	237, 525
HaeIII	GGCC	2 cut(s)	673, 1030
HhaI	GCGC	1 cut(s)	134
Hin1II	CATG	2 cut(s)	211, 788
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HindIII	AAGCTT	2 cut(s)	477, 829
HinfI	GANTC	5 cut(s)	219, 266, 285, 416, 809
HphI	GGTGA	2 cut(s)	287, 604
Hpy166II	GTNNAC	1 cut(s)	1041
Hpy188I	TCNGA	3 cut(s)	126, 708, 993
Hpy188III	TCNNGA	7 cut(s)	216, 282, 462, 542, 714, 785, 1074
Hpy8I	GTNNAC	1 cut(s)	1041
HpyAV	CCTTC	4 cut(s)	354, 600, 767, 805
HpyCH4III	ACNGT	3 cut(s)	168, 428, 458
HpyCH4V	TGCA	7 cut(s)	4, 366, 442, 806, 818, 824, 1064
HpyF10VI	GCNNNNNNNGC	1 cut(s)	837
HpyF3I	CTNAG	2 cut(s)	420, 867
Hsp92II	CATG	2 cut(s)	211, 788
HspAI	GCGC	1 cut(s)	132
KpnI	GGTACC	2 cut(s)	151, 690
Ksp22I	TGATCA	2 cut(s)	736, 988
Kzo9I	GATC	8 cut(s)	98, 235, 716, 736, 781, 886, 988, 1057
LmnI	GCTCC	1 cut(s)	845
Lsp1109I	GCAGC	2 cut(s)	913, 931
MaeI	CTAG	3 cut(s)	486, 669, 791
MalI	GATC	8 cut(s)	100, 237, 718, 738, 783, 888, 990, 1059
MboI	GATC	8 cut(s)	98, 235, 716, 736, 781, 886, 988, 1057
MflI	RGATCY	1 cut(s)	716
MhlI	GDGCHC	2 cut(s)	842, 941
MluCI	AATT	2 cut(s)	139, 1069
MlyI	GAGTC	4 cut(s)	228, 260, 279, 818
MmeI	TCCRAC	1 cut(s)	557
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	457
MseI	TTAA	3 cut(s)	60, 252, 833
MslI	CAYNNNNRTG	2 cut(s)	927, 1086
MspR9I	CCNGG	5 cut(s)	69, 357, 555, 911, 1051
MvaI	CCWGG	5 cut(s)	69, 357, 555, 911, 1051
MwoI	GCNNNNNNNGC	1 cut(s)	837
NdeI	CATATG	1 cut(s)	438
NdeII	GATC	8 cut(s)	98, 235, 716, 736, 781, 886, 988, 1057
NheI	GCTAGC	1 cut(s)	790
NlaIII	CATG	2 cut(s)	211, 788
NlaIV	GGNNCC	2 cut(s)	149, 688
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	784
PasI	CCCWGGG	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	457
PfeI	GAWTC	1 cut(s)	416
PkrI	GCNGC	2 cut(s)	903, 921
PleI	GAGTC	4 cut(s)	227, 260, 279, 817
PpsI	GAGTC	4 cut(s)	227, 260, 279, 817
Psp124BI	GAGCTC	1 cut(s)	842
Psp6I	CCWGG	5 cut(s)	67, 355, 553, 909, 1049
PspGI	CCWGG	5 cut(s)	67, 355, 553, 909, 1049
PspN4I	GGNNCC	2 cut(s)	149, 688
PstI	CTGCAG	1 cut(s)	808
PsuI	RGATCY	1 cut(s)	716
RsaI	GTAC	5 cut(s)	149, 206, 425, 548, 688
RsaNI	GTAC	5 cut(s)	148, 205, 424, 547, 687
RseI	CAYNNNNRTG	2 cut(s)	927, 1086
SacI	GAGCTC	1 cut(s)	842
SaqAI	TTAA	3 cut(s)	60, 252, 833
SatI	GCNGC	2 cut(s)	902, 920
Sau3AI	GATC	8 cut(s)	98, 235, 716, 736, 781, 886, 988, 1057
ScaI	AGTACT	1 cut(s)	425
SchI	GAGTC	4 cut(s)	228, 260, 279, 818
ScrFI	CCNGG	5 cut(s)	69, 357, 555, 911, 1051
SduI	GDGCHC	2 cut(s)	842, 941
SfcI	CTRYAG	1 cut(s)	804
SmiMI	CAYNNNNRTG	2 cut(s)	927, 1086
Sse9I	AATT	2 cut(s)	139, 1069
SspMI	CTAG	3 cut(s)	486, 669, 791
SstI	GAGCTC	1 cut(s)	842
StyD4I	CCNGG	5 cut(s)	67, 355, 553, 909, 1049
TaaI	ACNGT	3 cut(s)	168, 428, 458
TasI	AATT	2 cut(s)	139, 1069
TatI	WGTACW	3 cut(s)	204, 423, 546
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	3 cut(s)	60, 252, 833
Tru9I	TTAA	3 cut(s)	60, 252, 833
TscAI	CASTG	2 cut(s)	173, 946
TseI	GCWGC	2 cut(s)	901, 919
TspDTI	ATGAA	4 cut(s)	79, 633, 636, 1070
TspRI	CASTG	2 cut(s)	173, 946
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1016
XmnI	GAANNNNTTC	1 cut(s)	457
XspI	CTAG	3 cut(s)	486, 669, 791
ZrmI	AGTACT	1 cut(s)	425
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.