Rh2AG445100

Growth-regulating factor

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Reverse (-)
65753019 .. 65755179
2161 bp
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UTR
Exon/CDS
Intron
Rh2AG445100.1

Sequence Viewer

Length: 831 bp
ATGCATAAAAAAGGAAATCAATGCTCTCTTCCTTTTCTTCTTCTTCTTCTCCTTATTAAATCCCCAGAGCTGTTGTCTCTCTTTTCCATTGTGGGATCAAAAATGATGAGTGGAGGAAATCCAAGTAGCGCAAGGAATTACAGGTACCCTTTCACAGCAACACAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTTCAAGTACATGGTCTCTGGAGTCCCCATCCCAACTGATCTTGTCTATTCCTTTAAAAGAAGACTGGACTCCTCAATCTCTTCCAGACTCTTTCCTCACCACCCTTTTGGGTGGGGTTGCTATGATATGGGCTTTGGCAGAAAGATAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGTAAAAAATGGAGGTGTTCAAAGGAAGCATACCCAGATTCTAAATACTGTGAGAGGCATATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGCTTCTTCTAGTTCTTCTACTACAACTCCTAATAATAATAATACTATTCAAACACCTCCAGAGTACAACCCTGCTTCAATCCACAAAAACCTCTCCAAAACCTCCCCTTCAATGTTTTCCTCATCTTTCACCAATGAAACACCTCACACCCAACACCAAAGTTCATCTCTTTATCCATTCCTTTCTCGGCCACAGGGTTCCGGTACCAACCCTCAACTTTTTCTCAACTCTGGATCTTATGTTAGTGAAGCTGATCACAGAGATTACAGGTTTGTCATTTGTATTAAGCGAATCAAATTTCTTGATTTGCCTTGTGTTTTCAGCCATAAAGATTTGTATTTTTTCCTTTTCAAATAG

Protein Analysis

276

Amino Acids

31.65

Weight (kDa)

9.7

Isoelectric Point (pI)

52.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
QLQ PF08880 50 - 80 1.8e-14 QLQ
WRC PF08879 116 - 158 2.5e-21 WRC
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13960
fragaria_vesca FvH4_6g34730 FvH4_6g34730 FvH4_6g34730
malus_domestica MD09G1183300.v1.1
prunus_persica Prupe.3G041800_v2.0.a1
pyrus_communis pycom09g10100
rosa_chinensis RchiOBHm_Chr2g0145381
rosa_laevigata RLG00000020139
rosa_multiflora Rmu_sc0001298.1_g000050
rosa_roxburghii Rroxscaffold_2G00100740
rosa_rugosa Rorug02G0391800
rosa_samantha Rh2AG445100 Rh2BG455900 Rh2CG431900 Rh2DG465800
rosa_wichuraiana Rw2G036350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 144, 677
AccB1I GGYRCC 2 cut(s) 144, 677
AclWI GGATC 2 cut(s) 103, 715
AcoI YGGCCR 1 cut(s) 662
AcsI RAATTY 1 cut(s) 770
AfaI GTAC 4 cut(s) 146, 203, 539, 679
AfiI CCNNNNNNNGG 1 cut(s) 353
AgsI TTSAA 8 cut(s) 179, 199, 396, 459, 524, 552, 585, 826
AjnI CCWGG 1 cut(s) 352
AluBI AGCT 5 cut(s) 70, 175, 188, 476, 725
AluI AGCT 5 cut(s) 70, 175, 188, 476, 725
Alw26I GTCTC 2 cut(s) 81, 214
AlwI GGATC 2 cut(s) 103, 715
AoxI GGCC 1 cut(s) 662
ApoI RAATTY 1 cut(s) 770
Asp700I GAANNNNTTC 1 cut(s) 454
Asp718I GGTACC 2 cut(s) 144, 677
AspLEI GCGC 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 284, 595
BanI GGYRCC 2 cut(s) 144, 677
BbsI GAAGAC 1 cut(s) 262
BccI CCATC 2 cut(s) 230, 368
BciT130I CCWGG 1 cut(s) 354
BclI TGATCA 1 cut(s) 727
BcoDI GTCTC 2 cut(s) 81, 214
BfaI CTAG 1 cut(s) 483
Bme1390I CCNGG 1 cut(s) 354
BmiI GGNNCC 3 cut(s) 146, 673, 679
BmrFI CCNGG 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 262
BpmI CTGGAG 2 cut(s) 234, 516
BsaI GGTCTC 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 674
BsaXI ACNNNNNCTCC 2 cut(s) 484, 514
Bsc4I CCNNNNNNNGG 1 cut(s) 353
Bse1I ACTGG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 353
BseNI ACTGG 1 cut(s) 264
BseRI GAGGAG 1 cut(s) 256
BsgI GTGCAG 1 cut(s) 382
BshFI GGCC 1 cut(s) 664
BshNI GGYRCC 2 cut(s) 144, 677
BsiSI CCGG 1 cut(s) 675
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 353
BsmAI GTCTC 2 cut(s) 81, 214
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 664
Bso31I GGTCTC 1 cut(s) 214
Bsp143I GATC 4 cut(s) 95, 232, 707, 727
BspANI GGCC 1 cut(s) 664
BspLI GGNNCC 3 cut(s) 146, 673, 679
BspPI GGATC 2 cut(s) 103, 715
BspT107I GGYRCC 2 cut(s) 144, 677
BspTNI GGTCTC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 264
BssMI GATC 4 cut(s) 95, 232, 707, 727
Bst2UI CCWGG 1 cut(s) 354
Bst4CI ACNGT 3 cut(s) 165, 425, 455
Bst6I CTCTTC 2 cut(s) 33, 280
BstF5I GGATG 1 cut(s) 222
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 4 cut(s) 98, 235, 710, 730
BstMAI GTCTC 2 cut(s) 81, 214
BstMBI GATC 4 cut(s) 95, 232, 707, 727
BstNI CCWGG 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 352
BstV2I GAAGAC 1 cut(s) 262
BstX2I RGATCY 1 cut(s) 707
BstXI CCANNNNNNTGG 1 cut(s) 302
BstYI RGATCY 1 cut(s) 707
BsuRI GGCC 1 cut(s) 664
BtsCI GGATG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 170
CfoI GCGC 1 cut(s) 131
Csp6I GTAC 4 cut(s) 145, 202, 538, 678
CviAII CATG 1 cut(s) 205
CviQI GTAC 4 cut(s) 145, 202, 538, 678
DpnI GATC 4 cut(s) 97, 234, 709, 729
DpnII GATC 4 cut(s) 95, 232, 707, 727
DraI TTTAAA 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 662
Eam1104I CTCTTC 2 cut(s) 33, 280
EarI CTCTTC 2 cut(s) 33, 280
Eco31I GGTCTC 1 cut(s) 214
EcoRII CCWGG 1 cut(s) 352
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 208
FaiI YATR 9 cut(s) 6, 206, 318, 323, 406, 435, 437, 714, 801
FaqI GGGAC 1 cut(s) 203
FatI CATG 1 cut(s) 204
FauNDI CATATG 1 cut(s) 435
FbaI TGATCA 1 cut(s) 727
FokI GGATG 1 cut(s) 209
FspBI CTAG 1 cut(s) 483
GlaI GCGC 1 cut(s) 130
GsuI CTGGAG 2 cut(s) 234, 516
HaeIII GGCC 1 cut(s) 664
HapII CCGG 1 cut(s) 675
HhaI GCGC 1 cut(s) 131
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 474
HinfI GANTC 5 cut(s) 216, 263, 282, 413, 765
HpaII CCGG 1 cut(s) 675
HphI GGTGA 2 cut(s) 284, 595
Hpy188III TCNNGA 6 cut(s) 213, 279, 459, 533, 705, 776
HpyAV CCTTC 2 cut(s) 351, 591
HpyCH4III ACNGT 3 cut(s) 165, 425, 455
HpyCH4V TGCA 3 cut(s) 4, 363, 439
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 1 cut(s) 129
KpnI GGTACC 2 cut(s) 148, 681
Ksp22I TGATCA 1 cut(s) 727
Kzo9I GATC 4 cut(s) 95, 232, 707, 727
MaeI CTAG 1 cut(s) 483
MalI GATC 4 cut(s) 97, 234, 709, 729
MboI GATC 4 cut(s) 95, 232, 707, 727
MflI RGATCY 1 cut(s) 707
MluCI AATT 2 cut(s) 136, 770
MlyI GAGTC 3 cut(s) 225, 257, 276
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 454
MseI TTAA 3 cut(s) 57, 249, 759
MspI CCGG 1 cut(s) 675
MspR9I CCNGG 1 cut(s) 354
MvaI CCWGG 1 cut(s) 354
NdeI CATATG 1 cut(s) 435
NdeII GATC 4 cut(s) 95, 232, 707, 727
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 3 cut(s) 146, 673, 679
NmeAIII GCCGAG 1 cut(s) 640
NsiI ATGCAT 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 454
PfeI GAWTC 2 cut(s) 413, 765
PleI GAGTC 3 cut(s) 224, 257, 276
PpsI GAGTC 3 cut(s) 224, 257, 276
Psp6I CCWGG 1 cut(s) 352
PspGI CCWGG 1 cut(s) 352
PspN4I GGNNCC 3 cut(s) 146, 673, 679
PsuI RGATCY 1 cut(s) 707
RsaI GTAC 4 cut(s) 146, 203, 539, 679
RsaNI GTAC 4 cut(s) 145, 202, 538, 678
SaqAI TTAA 3 cut(s) 57, 249, 759
Sau3AI GATC 4 cut(s) 95, 232, 707, 727
SchI GAGTC 3 cut(s) 225, 257, 276
ScrFI CCNGG 1 cut(s) 354
Sse9I AATT 2 cut(s) 136, 770
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 1 cut(s) 352
TaaI ACNGT 3 cut(s) 165, 425, 455
TasI AATT 2 cut(s) 136, 770
TatI WGTACW 2 cut(s) 201, 537
TfiI GAWTC 2 cut(s) 413, 765
Tru1I TTAA 3 cut(s) 57, 249, 759
Tru9I TTAA 3 cut(s) 57, 249, 759
TscAI CASTG 1 cut(s) 170
TspDTI ATGAA 2 cut(s) 624, 627
TspRI CASTG 1 cut(s) 170
XapI RAATTY 1 cut(s) 770
XmnI GAANNNNTTC 1 cut(s) 454
XspI CTAG 1 cut(s) 483
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.