Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0013899

Physical Location & Seq

Genomic Coordinates Reverse (-)

67480359 .. 67481661

Gene Structure 1303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG465800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGATGAGTGGAGGAAATCCAAGTAGCGCAAGGAATTACAGGTACCCTTTCACAGCAACACAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTTCAAGTACATGGTCTCTGGAGTCCCCATCCCAACTGATCTTGTCTATTCCTTTAAAAGAAGACTGGACTCCTCAATCTCTTCCAGACTCTTCCCTCACCACCCTTTTGGGTGGGGTTGCTATGATATGGGCTTTGGCAGAAAGATAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGTAAAAAATGGAGGTGTTCAAAGGAAGCATACCCAGATTCTAAGTACTGTGAGAGGCATATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGCTTCTTCTAGTTCTTCTACTACAACTCCTAATAATAATAATACTATTCCAACACCTCCAGAGCACAACCCTGCTTCAATCCACAAAAACCTCTCCAAAACCTCCCCTTCAATGTTTTCCTCATCTTTCACCAATGAAACACCTCACACCCAACACCAAAGTTCATCTCTTTATCCATTCCTTTCTCGGCCACAGGGTTCCGGTACCAACCCTCAACTTTTTCTCAACTCTGGATCTTATGTTAGTGAAGCTGATCACAGAGATTACAGGTATCTTCAAGGAACAAAGGAAGGTGTGGATCATGAGCTAGCCTTCTTTCCTGCAGAGTCTTCTGCAAATGCAAGAAGTTTAATGAGCTCCTATAAAGGCTACTCATCCCAATCTCAGTTTCAAAGCCTCACAGATCATTATCCACAGCAGCAATCCCAGGATGAGCAGCATTGCTATGTTTTGGGCACTGATTTCAAATCAAGCAGACCAATCAAAACAGAGAATAAAGAAGCTGATCAGACCCAAAAGTCCCTCCACCATTTCTTTGGAGACTGGCCTCCAAAGTCCACAGACACCTGGCTTGATCTTGCACCCAATTCCAGACTTCATAATGATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007275 GO:0008150 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

QLQ WRC

Protein Analysis

327

Amino Acids

37.25

Weight (kDa)

8.95

Isoelectric Point (pI)

59.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
QLQ	PF08880	16 - 46	2.3e-14	QLQ
WRC	PF08879	82 - 124	3.2e-21	WRC

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013899)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13960
fragaria_vesca	FvH4_6g34730 FvH4_6g34730 FvH4_6g34730
malus_domestica	MD09G1183300.v1.1
prunus_persica	Prupe.3G041800_v2.0.a1
pyrus_communis	pycom09g10100
rosa_chinensis	RchiOBHm_Chr2g0145381
rosa_laevigata	RLG00000020139
rosa_multiflora	Rmu_sc0001298.1_g000050
rosa_roxburghii	Rroxscaffold_2G00100740
rosa_rugosa	Rorug02G0391800
rosa_samantha	Rh2AG445100 Rh2BG455900 Rh2CG431900 Rh2DG465800
rosa_wichuraiana	Rw2G036350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	889
Acc65I	GGTACC	2 cut(s)	42, 575
AccB1I	GGYRCC	2 cut(s)	42, 575
AclWI	GGATC	2 cut(s)	613, 678
AcoI	YGGCCR	1 cut(s)	560
AfaI	GTAC	4 cut(s)	44, 101, 320, 577
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	9 cut(s)	77, 97, 294, 357, 450, 483, 650, 764, 838
AjnI	CCWGG	3 cut(s)	250, 798, 938
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
AluBI	AGCT	7 cut(s)	73, 86, 374, 623, 679, 729, 875
AluI	AGCT	7 cut(s)	73, 86, 374, 623, 679, 729, 875
Alw21I	GWGCWC	2 cut(s)	438, 731
Alw26I	GTCTC	2 cut(s)	112, 906
AlwI	GGATC	2 cut(s)	613, 678
AoxI	GGCC	2 cut(s)	560, 917
ApeKI	GCWGC	2 cut(s)	790, 808
Asp700I	GAANNNNTTC	1 cut(s)	352
Asp718I	GGTACC	2 cut(s)	42, 575
AspLEI	GCGC	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	182, 493
AsuNHI	GCTAGC	1 cut(s)	679
BaeGI	GKGCMC	1 cut(s)	830
BanI	GGYRCC	2 cut(s)	42, 575
BanII	GRGCYC	1 cut(s)	731
BbsI	GAAGAC	2 cut(s)	160, 693
Bbv12I	GWGCWC	2 cut(s)	438, 731
BbvI	GCAGC	2 cut(s)	802, 820
BccI	CCATC	3 cut(s)	128, 266, 971
BciT130I	CCWGG	3 cut(s)	252, 800, 940
BclI	TGATCA	2 cut(s)	625, 877
BcoDI	GTCTC	2 cut(s)	112, 906
BfaI	CTAG	2 cut(s)	381, 680
BfmI	CTRYAG	1 cut(s)	693
BisI	GCNGC	2 cut(s)	791, 809
BlsI	GCNGC	2 cut(s)	792, 810
BmcAI	AGTACT	1 cut(s)	320
Bme1390I	CCNGG	3 cut(s)	252, 800, 940
BmiI	GGNNCC	3 cut(s)	44, 571, 577
BmrFI	CCNGG	3 cut(s)	252, 800, 940
BmtI	GCTAGC	1 cut(s)	683
BpiI	GAAGAC	2 cut(s)	160, 693
BpmI	CTGGAG	2 cut(s)	132, 414
BsaBI	GATNNNNATC	1 cut(s)	780
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	798
BsaWI	WCCGGW	1 cut(s)	572
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	162, 920
Bse3DI	GCAATG	1 cut(s)	811
Bse8I	GATNNNNATC	1 cut(s)	780
BseBI	CCWGG	3 cut(s)	252, 800, 940
BseDI	CCNNGG	1 cut(s)	798
BseGI	GGATG	3 cut(s)	120, 746, 808
BseJI	GATNNNNATC	1 cut(s)	780
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	811
BseMII	CTCAG	1 cut(s)	770
BseNI	ACTGG	2 cut(s)	162, 920
BseRI	GAGGAG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	830
BseXI	GCAGC	2 cut(s)	802, 820
BsgI	GTGCAG	1 cut(s)	280
BshFI	GGCC	2 cut(s)	562, 919
BshNI	GGYRCC	2 cut(s)	42, 575
BsiHKAI	GWGCWC	2 cut(s)	438, 731
BsiSI	CCGG	1 cut(s)	573
BslFI	GGGAC	2 cut(s)	101, 877
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	2 cut(s)	112, 906
BsmFI	GGGAC	2 cut(s)	101, 877
BsnI	GGCC	2 cut(s)	562, 919
Bso31I	GGTCTC	1 cut(s)	112
Bsp1286I	GDGCHC	3 cut(s)	438, 731, 830
Bsp143I	GATC	7 cut(s)	130, 605, 625, 670, 775, 877, 946
BspANI	GGCC	2 cut(s)	562, 919
BspCNI	CTCAG	1 cut(s)	769
BspHI	TCATGA	1 cut(s)	673
BspLI	GGNNCC	3 cut(s)	44, 571, 577
BspMAI	CTGCAG	1 cut(s)	697
BspOI	GCTAGC	1 cut(s)	683
BspPI	GGATC	2 cut(s)	613, 678
BspT107I	GGYRCC	2 cut(s)	42, 575
BspTNI	GGTCTC	1 cut(s)	112
BsrDI	GCAATG	1 cut(s)	811
BsrI	ACTGG	2 cut(s)	162, 920
BssECI	CCNNGG	1 cut(s)	798
BssMI	GATC	7 cut(s)	130, 605, 625, 670, 775, 877, 946
Bst2UI	CCWGG	3 cut(s)	252, 800, 940
Bst4CI	ACNGT	3 cut(s)	63, 323, 353
Bst6I	CTCTTC	2 cut(s)	178, 188
BstC8I	GCNNGC	1 cut(s)	681
BstDEI	CTNAG	2 cut(s)	315, 756
BstF5I	GGATG	3 cut(s)	120, 746, 808
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	7 cut(s)	133, 608, 628, 673, 778, 880, 949
BstMAI	GTCTC	2 cut(s)	112, 906
BstMBI	GATC	7 cut(s)	130, 605, 625, 670, 775, 877, 946
BstNI	CCWGG	3 cut(s)	252, 800, 940
BstSCI	CCNGG	3 cut(s)	250, 798, 938
BstSFI	CTRYAG	1 cut(s)	693
BstSLI	GKGCMC	1 cut(s)	830
BstV1I	GCAGC	2 cut(s)	802, 820
BstV2I	GAAGAC	2 cut(s)	160, 693
BstX2I	RGATCY	1 cut(s)	605
BstXI	CCANNNNNNTGG	2 cut(s)	200, 908
BstYI	RGATCY	1 cut(s)	605
BsuRI	GGCC	2 cut(s)	562, 919
BtsCI	GGATG	3 cut(s)	120, 746, 808
BtsIMutI	CAGTG	2 cut(s)	68, 828
Cac8I	GCNNGC	1 cut(s)	681
CciI	TCATGA	1 cut(s)	673
CfoI	GCGC	1 cut(s)	29
Csp6I	GTAC	4 cut(s)	43, 100, 319, 576
CviAII	CATG	2 cut(s)	103, 674
CviQI	GTAC	4 cut(s)	43, 100, 319, 576
DdeI	CTNAG	2 cut(s)	315, 756
DpnI	GATC	7 cut(s)	132, 607, 627, 672, 777, 879, 948
DpnII	GATC	7 cut(s)	130, 605, 625, 670, 775, 877, 946
DraI	TTTAAA	1 cut(s)	148
DrdI	GACNNNNNNGTC	1 cut(s)	889
DseDI	GACNNNNNNGTC	1 cut(s)	889
EaeI	YGGCCR	1 cut(s)	560
Eam1104I	CTCTTC	2 cut(s)	178, 188
EarI	CTCTTC	2 cut(s)	178, 188
Ecl136II	GAGCTC	1 cut(s)	729
Eco24I	GRGCYC	1 cut(s)	731
Eco31I	GGTCTC	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	729
EcoICRI	GAGCTC	1 cut(s)	729
EcoRII	CCWGG	3 cut(s)	250, 798, 938
EcoT38I	GRGCYC	1 cut(s)	731
FaeI	CATG	2 cut(s)	106, 677
FaqI	GGGAC	2 cut(s)	101, 877
FatI	CATG	2 cut(s)	102, 673
FauNDI	CATATG	1 cut(s)	333
FbaI	TGATCA	2 cut(s)	625, 877
Fnu4HI	GCNGC	2 cut(s)	791, 809
FokI	GGATG	3 cut(s)	107, 733, 815
FriOI	GRGCYC	1 cut(s)	731
Fsp4HI	GCNGC	2 cut(s)	791, 809
FspBI	CTAG	2 cut(s)	381, 680
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	2 cut(s)	791, 809
GsuI	CTGGAG	2 cut(s)	132, 414
HaeIII	GGCC	2 cut(s)	562, 919
HapII	CCGG	1 cut(s)	573
HhaI	GCGC	1 cut(s)	29
Hin1II	CATG	2 cut(s)	106, 677
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	5 cut(s)	114, 161, 180, 311, 698
HpaII	CCGG	1 cut(s)	573
HphI	GGTGA	2 cut(s)	182, 493
Hpy166II	GTNNAC	1 cut(s)	930
Hpy188I	TCNGA	1 cut(s)	882
Hpy188III	TCNNGA	7 cut(s)	111, 177, 357, 431, 603, 674, 963
Hpy8I	GTNNAC	1 cut(s)	930
HpyAV	CCTTC	4 cut(s)	249, 489, 656, 694
HpyCH4III	ACNGT	3 cut(s)	63, 323, 353
HpyCH4V	TGCA	6 cut(s)	261, 337, 695, 707, 713, 953
HpyF3I	CTNAG	2 cut(s)	315, 756
Hsp92II	CATG	2 cut(s)	106, 677
HspAI	GCGC	1 cut(s)	27
KpnI	GGTACC	2 cut(s)	46, 579
Ksp22I	TGATCA	2 cut(s)	625, 877
Kzo9I	GATC	7 cut(s)	130, 605, 625, 670, 775, 877, 946
LmnI	GCTCC	1 cut(s)	734
Lsp1109I	GCAGC	2 cut(s)	802, 820
MaeI	CTAG	2 cut(s)	381, 680
MalI	GATC	7 cut(s)	132, 607, 627, 672, 777, 879, 948
MboI	GATC	7 cut(s)	130, 605, 625, 670, 775, 877, 946
MboII	GAAGA	9 cut(s)	85, 165, 165, 175, 276, 369, 378, 638, 693
MflI	RGATCY	1 cut(s)	605
MhlI	GDGCHC	3 cut(s)	438, 731, 830
MluCI	AATT	2 cut(s)	34, 958
MlyI	GAGTC	4 cut(s)	123, 155, 174, 707
MmeI	TCCRAC	1 cut(s)	446
MroXI	GAANNNNTTC	1 cut(s)	352
MseI	TTAA	2 cut(s)	147, 722
MslI	CAYNNNNRTG	2 cut(s)	816, 975
MspI	CCGG	1 cut(s)	573
MspR9I	CCNGG	3 cut(s)	252, 800, 940
MvaI	CCWGG	3 cut(s)	252, 800, 940
NdeI	CATATG	1 cut(s)	333
NdeII	GATC	7 cut(s)	130, 605, 625, 670, 775, 877, 946
NheI	GCTAGC	1 cut(s)	679
NlaIII	CATG	2 cut(s)	106, 677
NlaIV	GGNNCC	3 cut(s)	44, 571, 577
NmeAIII	GCCGAG	1 cut(s)	538
PagI	TCATGA	1 cut(s)	673
PdmI	GAANNNNTTC	1 cut(s)	352
PfeI	GAWTC	1 cut(s)	311
PkrI	GCNGC	2 cut(s)	792, 810
PleI	GAGTC	4 cut(s)	122, 155, 174, 706
PpsI	GAGTC	4 cut(s)	122, 155, 174, 706
Psp124BI	GAGCTC	1 cut(s)	731
Psp6I	CCWGG	3 cut(s)	250, 798, 938
PspGI	CCWGG	3 cut(s)	250, 798, 938
PspN4I	GGNNCC	3 cut(s)	44, 571, 577
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	605
RsaI	GTAC	4 cut(s)	44, 101, 320, 577
RsaNI	GTAC	4 cut(s)	43, 100, 319, 576
RseI	CAYNNNNRTG	2 cut(s)	816, 975
SacI	GAGCTC	1 cut(s)	731
SaqAI	TTAA	2 cut(s)	147, 722
SatI	GCNGC	2 cut(s)	791, 809
Sau3AI	GATC	7 cut(s)	130, 605, 625, 670, 775, 877, 946
ScaI	AGTACT	1 cut(s)	320
SchI	GAGTC	4 cut(s)	123, 155, 174, 707
ScrFI	CCNGG	3 cut(s)	252, 800, 940
SduI	GDGCHC	3 cut(s)	438, 731, 830
SfcI	CTRYAG	1 cut(s)	693
SmiMI	CAYNNNNRTG	2 cut(s)	816, 975
Sse9I	AATT	2 cut(s)	34, 958
SspMI	CTAG	2 cut(s)	381, 680
SstI	GAGCTC	1 cut(s)	731
StyD4I	CCNGG	3 cut(s)	250, 798, 938
TaaI	ACNGT	3 cut(s)	63, 323, 353
TasI	AATT	2 cut(s)	34, 958
TatI	WGTACW	2 cut(s)	99, 318
TfiI	GAWTC	1 cut(s)	311
Tru1I	TTAA	2 cut(s)	147, 722
Tru9I	TTAA	2 cut(s)	147, 722
TscAI	CASTG	2 cut(s)	68, 835
TseI	GCWGC	2 cut(s)	790, 808
TspDTI	ATGAA	3 cut(s)	522, 525, 959
TspRI	CASTG	2 cut(s)	68, 835
XcmI	CCANNNNNNNNNTGG	1 cut(s)	905
XmnI	GAANNNNTTC	1 cut(s)	352
XspI	CTAG	2 cut(s)	381, 680
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.