pycom09g10100

Growth-regulating factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0013899
Physical Location & Seq
Forward (+)
8213622 .. 8215108
1487 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g10100.3

Sequence Viewer

Length: 987 bp
ATGATGAGTGGAAATCCAAGTAGTGCAGCAAGAAATAGGTATCCTTTCACAGCAACTCAGTGGCAAGAGCTAGAACATCAGGCCCTAATCTTCAAGTACATGACCTCCGGAGTCCCCATCCCCAATGACCTTGTCTACCCTTTCAAAAGAAGGTTGGACTCCTCCGTTTCCTCAAGACTCTTCCCCCATCACCCCATGGGATGGGGGTGCTATGAGATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGAAGGTGCAGAAGAACAGATGGCAAAAAATGGAGGTGTTCTAAGGAAGCGTATCCAGATTCCAAGTACTGCGAGAGGCACATGCACAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAGTTTCCTCTTCTTCTTCTGCATTATCATCTCCTACTGCAGCATCCACAGCAACAGCTGAGCACCTTTCTTCTCCTTCTGCCACCTCACCATCATCATCTTCCCTCCACAGAAATCTCTGCAAAACCTCCTCTTCCTCCTACACTCTCACTCCACTCTCCTCATCAATCTCCACTCAACAAACCCACCAGTCAAATTCATCTCTCTACCCTTTCCTTAATTATCCTTATTCTTCCTCCTCTTCCAGTTCTGCCCCTCAGCTTTTTCTGAACTCTGCATCTTATTCAGATAAAGATTACAGGTATCTTCAAGGAGCAAAGGAAGGTGTGGATGAGCTAGCTTTCTTTCCAGATTCTTCAGCAGATGAAAGAAACTTGTTAATGAATTCCTACAGAGGCTACTCCCCCACCCAACAATCACAGGAGGACCAACAGCAACATTGTTTTGTTTGGGGGACTGATTTCAAATCAGTTAAAACAGAGAAAGAATCAGCAGCAGCAGCAGCTGAATCCCAAAAGTCACTCCACCACTTCTTTGGAGAGTGGCAGGAGCCAACCAAGAGCTCTGGAGACACCTGGCTTGATCTTGCTTCCAATTCTGGAGGTCCTAATGATGGTTAA

Protein Analysis

329

Amino Acids

36.48

Weight (kDa)

8.43

Isoelectric Point (pI)

56.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013899)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13960
fragaria_vesca FvH4_6g34730 FvH4_6g34730 FvH4_6g34730
malus_domestica MD09G1183300.v1.1
prunus_persica Prupe.3G041800_v2.0.a1
pyrus_communis pycom09g10100
rosa_chinensis RchiOBHm_Chr2g0145381
rosa_laevigata RLG00000020139
rosa_multiflora Rmu_sc0001298.1_g000050
rosa_roxburghii Rroxscaffold_2G00100740
rosa_rugosa Rorug02G0391800
rosa_samantha Rh2AG445100 Rh2BG455900 Rh2CG431900 Rh2DG465800
rosa_wichuraiana Rw2G036350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 201
AccI GTMKAC 2 cut(s) 135, 237
AccIII TCCGGA 1 cut(s) 107
AcsI RAATTY 2 cut(s) 562, 751
AcuI CTGAAG 1 cut(s) 708
AfaI GTAC 2 cut(s) 98, 317
AfiI CCNNNNNNNGG 3 cut(s) 201, 248, 980
AgsI TTSAA 5 cut(s) 94, 145, 354, 677, 832
AjnI CCWGG 2 cut(s) 247, 941
AluBI AGCT 7 cut(s) 70, 425, 628, 703, 707, 872, 930
AluI AGCT 7 cut(s) 70, 425, 628, 703, 707, 872, 930
Alw21I GWGCWC 2 cut(s) 432, 932
Alw26I GTCTC 1 cut(s) 930
AlwNI CAGNNNCTG 1 cut(s) 872
Aor13HI TCCGGA 1 cut(s) 107
AoxI GGCC 1 cut(s) 81
ApeKI GCWGC 6 cut(s) 26, 407, 860, 863, 866, 869
ApoI RAATTY 2 cut(s) 562, 751
Asp700I GAANNNNTTC 1 cut(s) 349
AspS9I GGNCC 3 cut(s) 82, 793, 971
AsuHPI GGTGA 2 cut(s) 182, 447
AsuNHI GCTAGC 1 cut(s) 703
AvaII GGWCC 2 cut(s) 793, 971
BanII GRGCYC 1 cut(s) 932
Bbv12I GWGCWC 2 cut(s) 432, 932
BbvCI CCTCAGC 1 cut(s) 624
BbvI GCAGC 6 cut(s) 38, 419, 872, 875, 878, 881
BccI CCATC 7 cut(s) 125, 195, 195, 211, 263, 466, 974
BciT130I CCWGG 2 cut(s) 249, 943
BciVI GTATCC 2 cut(s) 51, 312
BcoDI GTCTC 1 cut(s) 930
BfaI CTAG 2 cut(s) 71, 704
BfmI CTRYAG 2 cut(s) 405, 757
BfuI GTATCC 2 cut(s) 51, 312
BisI GCNGC 6 cut(s) 27, 408, 861, 864, 867, 870
BlpI GCTNAGC 1 cut(s) 426
BlsI GCNGC 6 cut(s) 28, 409, 862, 865, 868, 871
BmcAI AGTACT 1 cut(s) 317
Bme1390I CCNGG 2 cut(s) 249, 943
Bme18I GGWCC 2 cut(s) 793, 971
BmgT120I GGNCC 3 cut(s) 82, 793, 971
BmiI GGNNCC 1 cut(s) 918
BmrFI CCNGG 2 cut(s) 249, 943
BmsI GCATC 2 cut(s) 419, 653
BmtI GCTAGC 1 cut(s) 707
BpmI CTGGAG 2 cut(s) 954, 987
Bpu10I CCTNAGC 1 cut(s) 624
Bpu1102I GCTNAGC 1 cut(s) 426
BpuEI CTTGAG 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 195
BsaWI WCCGGW 1 cut(s) 107
BsaXI ACNNNNNCTCC 4 cut(s) 89, 119, 502, 532
Bsc4I CCNNNNNNNGG 3 cut(s) 201, 248, 980
Bse1I ACTGG 2 cut(s) 556, 612
BseAI TCCGGA 1 cut(s) 107
BseBI CCWGG 2 cut(s) 249, 943
BseDI CCNNGG 1 cut(s) 195
BseGI GGATG 4 cut(s) 117, 206, 410, 703
BseLI CCNNNNNNNGG 3 cut(s) 201, 248, 980
BseMII CTCAG 3 cut(s) 71, 417, 638
BseNI ACTGG 2 cut(s) 556, 612
BseRI GAGGAG 4 cut(s) 151, 487, 517, 595
BseXI GCAGC 6 cut(s) 38, 419, 872, 875, 878, 881
BsgI GTGCAG 2 cut(s) 45, 277
BshFI GGCC 1 cut(s) 83
BsiHKAI GWGCWC 2 cut(s) 432, 932
BsiSI CCGG 1 cut(s) 108
BslFI GGGAC 2 cut(s) 98, 835
BslI CCNNNNNNNGG 3 cut(s) 201, 248, 980
BsmAI GTCTC 1 cut(s) 930
BsmFI GGGAC 2 cut(s) 98, 835
BsnI GGCC 1 cut(s) 83
Bsp1286I GDGCHC 2 cut(s) 432, 932
Bsp13I TCCGGA 1 cut(s) 107
Bsp143I GATC 1 cut(s) 949
Bsp1720I GCTNAGC 1 cut(s) 426
Bsp19I CCATGG 1 cut(s) 195
BspANI GGCC 1 cut(s) 83
BspCNI CTCAG 3 cut(s) 70, 418, 637
BspEI TCCGGA 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 918
BspMAI CTGCAG 1 cut(s) 409
BspOI GCTAGC 1 cut(s) 707
BsrI ACTGG 2 cut(s) 556, 612
BssECI CCNNGG 1 cut(s) 195
BssMI GATC 1 cut(s) 949
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 2 cut(s) 249, 943
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 4 cut(s) 185, 382, 505, 613
BstC8I GCNNGC 1 cut(s) 705
BstDEI CTNAG 4 cut(s) 57, 291, 426, 624
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 4 cut(s) 117, 206, 410, 703
BstKTI GATC 1 cut(s) 952
BstMAI GTCTC 1 cut(s) 930
BstMBI GATC 1 cut(s) 949
BstMWI GCNNNNNNNGC 3 cut(s) 416, 866, 869
BstNI CCWGG 2 cut(s) 249, 943
BstNSI RCATGY 1 cut(s) 334
BstSCI CCNGG 2 cut(s) 247, 941
BstSFI CTRYAG 2 cut(s) 405, 757
BstV1I GCAGC 6 cut(s) 38, 419, 872, 875, 878, 881
BstXI CCANNNNNNTGG 1 cut(s) 902
BsuI GTATCC 2 cut(s) 51, 312
BsuRI GGCC 1 cut(s) 83
BtgI CCRYGG 1 cut(s) 195
BtsCI GGATG 4 cut(s) 117, 206, 410, 703
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 705
CaiI CAGNNNCTG 1 cut(s) 872
Cfr13I GGNCC 3 cut(s) 82, 793, 971
Csp6I GTAC 2 cut(s) 97, 316
CviAII CATG 3 cut(s) 100, 196, 331
CviQI GTAC 2 cut(s) 97, 316
DdeI CTNAG 4 cut(s) 57, 291, 426, 624
DpnI GATC 1 cut(s) 951
DpnII GATC 1 cut(s) 949
Eam1104I CTCTTC 4 cut(s) 185, 382, 505, 613
EarI CTCTTC 4 cut(s) 185, 382, 505, 613
Ecl136II GAGCTC 1 cut(s) 930
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 1 cut(s) 932
Eco47I GGWCC 2 cut(s) 793, 971
Eco53kI GAGCTC 1 cut(s) 930
Eco57I CTGAAG 1 cut(s) 708
EcoICRI GAGCTC 1 cut(s) 930
EcoO109I RGGNCCY 2 cut(s) 82, 971
EcoRI GAATTC 1 cut(s) 751
EcoRII CCWGG 2 cut(s) 247, 941
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 1 cut(s) 932
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 3 cut(s) 103, 199, 334
FaiI YATR 4 cut(s) 101, 197, 213, 332
FaqI GGGAC 2 cut(s) 98, 835
FatI CATG 3 cut(s) 99, 195, 330
FblI GTMKAC 2 cut(s) 135, 237
Fnu4HI GCNGC 6 cut(s) 27, 408, 861, 864, 867, 870
FokI GGATG 4 cut(s) 104, 213, 397, 710
FriOI GRGCYC 1 cut(s) 932
Fsp4HI GCNGC 6 cut(s) 27, 408, 861, 864, 867, 870
FspBI CTAG 2 cut(s) 71, 704
GluI GCNGC 6 cut(s) 27, 408, 861, 864, 867, 870
GsuI CTGGAG 2 cut(s) 954, 987
HaeIII GGCC 1 cut(s) 83
HapII CCGG 1 cut(s) 108
Hin1II CATG 3 cut(s) 103, 199, 334
HinfI GANTC 7 cut(s) 111, 158, 177, 308, 719, 854, 875
HpaII CCGG 1 cut(s) 108
HphI GGTGA 2 cut(s) 182, 447
Hpy166II GTNNAC 2 cut(s) 136, 238
Hpy188I TCNGA 2 cut(s) 636, 655
Hpy188III TCNNGA 7 cut(s) 108, 174, 305, 354, 716, 933, 966
Hpy8I GTNNAC 2 cut(s) 136, 238
HpyAV CCTTC 4 cut(s) 144, 246, 453, 683
HpyCH4III ACNGT 1 cut(s) 350
HpyCH4V TGCA 7 cut(s) 26, 258, 334, 389, 407, 489, 644
HpyF10VI GCNNNNNNNGC 3 cut(s) 416, 866, 869
HpyF3I CTNAG 4 cut(s) 57, 291, 426, 624
Hsp92II CATG 3 cut(s) 103, 199, 334
Kpn2I TCCGGA 1 cut(s) 107
Kzo9I GATC 1 cut(s) 949
LmnI GCTCC 2 cut(s) 680, 916
Lsp1109I GCAGC 6 cut(s) 38, 419, 872, 875, 878, 881
LweI GCATC 2 cut(s) 419, 653
MaeI CTAG 2 cut(s) 71, 704
MaeIII GTNAC 1 cut(s) 885
MalI GATC 1 cut(s) 951
MboI GATC 1 cut(s) 949
MhlI GDGCHC 2 cut(s) 432, 932
MluCI AATT 4 cut(s) 562, 586, 751, 961
MlyI GAGTC 3 cut(s) 120, 152, 171
MmeI TCCRAC 1 cut(s) 135
MroI TCCGGA 1 cut(s) 107
MroXI GAANNNNTTC 1 cut(s) 349
MseI TTAA 4 cut(s) 585, 746, 840, 985
MspA1I CMGCKG 2 cut(s) 425, 872
MspI CCGG 1 cut(s) 108
MspR9I CCNGG 2 cut(s) 249, 943
MvaI CCWGG 2 cut(s) 249, 943
MwoI GCNNNNNNNGC 3 cut(s) 416, 866, 869
NcoI CCATGG 1 cut(s) 195
NdeII GATC 1 cut(s) 949
NheI GCTAGC 1 cut(s) 703
NlaIII CATG 3 cut(s) 103, 199, 334
NlaIV GGNNCC 1 cut(s) 918
NmuCI GTSAC 1 cut(s) 885
NspI RCATGY 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 349
PfeI GAWTC 4 cut(s) 308, 719, 854, 875
PflFI GACNNNGTC 1 cut(s) 131
PflMI CCANNNNNTGG 1 cut(s) 201
PkrI GCNGC 6 cut(s) 28, 409, 862, 865, 868, 871
PleI GAGTC 3 cut(s) 119, 152, 171
PpsI GAGTC 3 cut(s) 119, 152, 171
PpuMI RGGWCCY 1 cut(s) 971
Psp124BI GAGCTC 1 cut(s) 932
Psp5II RGGWCCY 1 cut(s) 971
Psp6I CCWGG 2 cut(s) 247, 941
PspGI CCWGG 2 cut(s) 247, 941
PspN4I GGNNCC 1 cut(s) 918
PspPI GGNCC 3 cut(s) 82, 793, 971
PspPPI RGGWCCY 1 cut(s) 971
PstI CTGCAG 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 872
PsyI GACNNNGTC 1 cut(s) 131
PvuII CAGCTG 2 cut(s) 425, 872
RsaI GTAC 2 cut(s) 98, 317
RsaNI GTAC 2 cut(s) 97, 316
SacI GAGCTC 1 cut(s) 932
SaqAI TTAA 4 cut(s) 585, 746, 840, 985
SatI GCNGC 6 cut(s) 27, 408, 861, 864, 867, 870
Sau3AI GATC 1 cut(s) 949
Sau96I GGNCC 3 cut(s) 82, 793, 971
ScaI AGTACT 1 cut(s) 317
SchI GAGTC 3 cut(s) 120, 152, 171
ScrFI CCNGG 2 cut(s) 249, 943
SduI GDGCHC 2 cut(s) 432, 932
SfaNI GCATC 2 cut(s) 419, 653
SfcI CTRYAG 2 cut(s) 405, 757
SinI GGWCC 2 cut(s) 793, 971
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 4 cut(s) 562, 586, 751, 961
SspMI CTAG 2 cut(s) 71, 704
SstI GAGCTC 1 cut(s) 932
StyD4I CCNGG 2 cut(s) 247, 941
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 350
TasI AATT 4 cut(s) 562, 586, 751, 961
TatI WGTACW 2 cut(s) 96, 315
TfiI GAWTC 4 cut(s) 308, 719, 854, 875
Tru1I TTAA 4 cut(s) 585, 746, 840, 985
Tru9I TTAA 4 cut(s) 585, 746, 840, 985
TscAI CASTG 1 cut(s) 65
TseFI GTSAC 1 cut(s) 885
TseI GCWGC 6 cut(s) 26, 407, 860, 863, 866, 869
Tsp45I GTSAC 1 cut(s) 885
TspDTI ATGAA 3 cut(s) 555, 747, 764
TspGWI ACGGA 1 cut(s) 154
TspRI CASTG 1 cut(s) 65
Tth111I GACNNNGTC 1 cut(s) 131
Van91I CCANNNNNTGG 1 cut(s) 201
VpaK11BI GGWCC 2 cut(s) 793, 971
XapI RAATTY 2 cut(s) 562, 751
XceI RCATGY 1 cut(s) 334
XcmI CCANNNNNNNNNTGG 1 cut(s) 899
XmiI GTMKAC 2 cut(s) 135, 237
XmnI GAANNNNTTC 1 cut(s) 349
XspI CTAG 2 cut(s) 71, 704
ZrmI AGTACT 1 cut(s) 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.