AT3G15250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015294
Physical Location & Seq
Reverse (-)
5136262 .. 5137195
934 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G15250.1

Sequence Viewer

Length: 681 bp
ATGGAGAATCATCGAGTAACAACAAACTCCGACGAGCCACCACCGGAGTTTGAGTTCGGATCGTTGACTCCAACTTCTCCGTCGCAAGACTCTTTCTCAGAGAATTCTCCCGCCGATCATCTCTTTTTCAACGGCCGTCTCTTGCCACACGCATTCCCGGCGGCGAGCAGTATTTATACAAAGCGGTCAATCTCGAGTACGACCAGCGAATACACCTCCCGGTGCAATAGTACGAACAGCAGCAGTAGTTTTGGTAGTAACAACAGCTCAACTTCTCAATCTCCGAGAACGAGCTATTCAACCAGTAACAAGAACAACAGCCCCATTAATCAAGAGCCACTGGATTTGAAGTTGAAGCCTCCAATTAGCAGATGTGACAAAACCGTAAATACGATGAGCAGTAGCTCCTACTCGTCGCCACAACACAAGAGAAGGAAGGCGATGGAGATGGCGACAACGTCTCTGTACAGGTCGTATTCATCGCAGCGGTGGCAATATATAACTCCGGTACCGGTGAGAATGAGTGGAGGGATAAGGGTCGGTGGCCGGAAGAAGAAGGCGGTGAGGGTGAGGAAGAAGACGGAAGAGAGAAGGGTGAGTAGGGTGATGAAGTTGTGGAGAAAACTTTTGATGGCGGCTATTTTTGTTTGTAGAGAGTGTCATGCATTGGAGGGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

25.35

Weight (kDa)

10.13

Isoelectric Point (pI)

73.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015294)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G53163 AT3G15250
fragaria_vesca FvH4_3g19630
malus_domestica MD03G1230800.v1.1
prunus_persica Prupe.4G177000_v2.0.a1
pyrus_communis pycom11g22350
rosa_chinensis RchiOBHm_Chr5g0032821
rosa_laevigata RLG00000033431
rosa_multiflora Rmu_sc0000986.1_g000045
rosa_roxburghii Rroxscaffold_1G00047230
rosa_rugosa Rorug05G0134100
rosa_samantha Rh5AG226700 Rh5BG227800 Rh5CG255700 Rh5DG232600
rosa_wichuraiana Rw5G020800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 508
AccB1I GGYRCC 1 cut(s) 508
AciI CCGC 6 cut(s) 111, 161, 184, 487, 560, 635
AclWI GGATC 1 cut(s) 67
AcoI YGGCCR 2 cut(s) 133, 544
AcsI RAATTY 1 cut(s) 103
AfaI GTAC 4 cut(s) 199, 232, 467, 510
AgeI ACCGGT 1 cut(s) 511
AgsI TTSAA 4 cut(s) 130, 300, 349, 355
AloI GAACNNNNNNTCC 2 cut(s) 38, 70
AluBI AGCT 4 cut(s) 267, 294, 405, 677
AluI AGCT 4 cut(s) 267, 294, 405, 677
Alw26I GTCTC 2 cut(s) 143, 465
AlwI GGATC 1 cut(s) 67
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 2 cut(s) 133, 544
ApeKI GCWGC 2 cut(s) 240, 484
ApoI RAATTY 1 cut(s) 103
AseI ATTAAT 1 cut(s) 327
AsiGI ACCGGT 1 cut(s) 511
Asp718I GGTACC 1 cut(s) 508
AsuC2I CCSGG 2 cut(s) 158, 220
AsuHPI GGTGA 5 cut(s) 526, 574, 580, 607, 616
AvaI CYCGRG 1 cut(s) 193
BaeI ACNNNNGTAYC 2 cut(s) 492, 525
BanI GGYRCC 1 cut(s) 508
BbsI GAAGAC 1 cut(s) 584
BbvI GCAGC 2 cut(s) 252, 496
BccI CCATC 3 cut(s) 436, 442, 625
BceAI ACGGC 2 cut(s) 120, 148
BcnI CCSGG 2 cut(s) 158, 220
BcoDI GTCTC 2 cut(s) 143, 465
BisI GCNGC 4 cut(s) 162, 241, 485, 636
BlsI GCNGC 4 cut(s) 163, 242, 486, 637
Bme1390I CCNGG 2 cut(s) 158, 220
BmeT110I CYCGRG 1 cut(s) 193
BmiI GGNNCC 1 cut(s) 510
BmrFI CCNGG 2 cut(s) 158, 220
BpiI GAAGAC 1 cut(s) 584
BpuMI CCSGG 2 cut(s) 158, 220
BsaWI WCCGGW 3 cut(s) 43, 505, 511
BsaXI ACNNNNNCTCC 2 cut(s) 38, 68
Bse118I RCCGGY 1 cut(s) 511
Bse1I ACTGG 2 cut(s) 303, 345
BseMII CTCAG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 303, 345
BseX3I CGGCCG 1 cut(s) 133
BseXI GCAGC 2 cut(s) 252, 496
Bsh1285I CGRYCG 1 cut(s) 136
BshFI GGCC 2 cut(s) 135, 546
BshNI GGYRCC 1 cut(s) 508
BshTI ACCGGT 1 cut(s) 511
BsiEI CGRYCG 1 cut(s) 136
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 6 cut(s) 44, 158, 220, 506, 512, 547
BsmAI GTCTC 2 cut(s) 143, 465
BsmBI CGTCTC 2 cut(s) 143, 465
BsmI GAATGC 1 cut(s) 152
BsnI GGCC 2 cut(s) 135, 546
BsoBI CYCGRG 1 cut(s) 193
Bsp1407I TGTACA 1 cut(s) 465
Bsp143I GATC 2 cut(s) 59, 115
BspACI CCGC 6 cut(s) 111, 161, 184, 487, 560, 635
BspANI GGCC 2 cut(s) 135, 546
BspCNI CTCAG 1 cut(s) 110
BspLI GGNNCC 1 cut(s) 510
BspPI GGATC 1 cut(s) 67
BspT107I GGYRCC 1 cut(s) 508
BsrFI RCCGGY 1 cut(s) 511
BsrGI TGTACA 1 cut(s) 465
BsrI ACTGG 2 cut(s) 303, 345
BssAI RCCGGY 1 cut(s) 511
BssMI GATC 2 cut(s) 59, 115
Bst4CI ACNGT 1 cut(s) 385
Bst6I CTCTTC 1 cut(s) 579
BstAUI TGTACA 1 cut(s) 465
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 97
BstKTI GATC 2 cut(s) 62, 118
BstMAI GTCTC 2 cut(s) 143, 465
BstMBI GATC 2 cut(s) 59, 115
BstMCI CGRYCG 1 cut(s) 136
BstMWI GCNNNNNNNGC 2 cut(s) 158, 490
BstSCI CCNGG 2 cut(s) 156, 218
BstV1I GCAGC 2 cut(s) 252, 496
BstV2I GAAGAC 1 cut(s) 584
BstZI CGGCCG 1 cut(s) 133
BsuRI GGCC 2 cut(s) 135, 546
BtgZI GCGATG 2 cut(s) 455, 465
BtsIMutI CAGTG 1 cut(s) 338
Cac8I GCNNGC 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 511
Csp6I GTAC 4 cut(s) 198, 231, 466, 509
CspAI ACCGGT 1 cut(s) 511
CspCI CAANNNNNGTGG 2 cut(s) 327, 362
CviAII CATG 1 cut(s) 662
CviQI GTAC 4 cut(s) 198, 231, 466, 509
DdeI CTNAG 1 cut(s) 97
DpnI GATC 2 cut(s) 61, 117
DpnII GATC 2 cut(s) 59, 115
EaeI YGGCCR 2 cut(s) 133, 544
EagI CGGCCG 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
EclXI CGGCCG 1 cut(s) 133
Eco52I CGGCCG 1 cut(s) 133
Eco88I CYCGRG 1 cut(s) 193
EcoRI GAATTC 1 cut(s) 103
EcoT22I ATGCAT 1 cut(s) 667
Esp3I CGTCTC 2 cut(s) 143, 465
FaeI CATG 1 cut(s) 665
FaiI YATR 4 cut(s) 177, 498, 500, 663
FatI CATG 1 cut(s) 661
FauI CCCGC 1 cut(s) 118
Fnu4HI GCNGC 4 cut(s) 162, 241, 485, 636
Fsp4HI GCNGC 4 cut(s) 162, 241, 485, 636
GluI GCNGC 4 cut(s) 162, 241, 485, 636
HaeIII GGCC 2 cut(s) 135, 546
HapII CCGG 6 cut(s) 44, 158, 220, 506, 512, 547
Hin1II CATG 1 cut(s) 665
HincII GTYRAC 1 cut(s) 66
HindII GTYRAC 1 cut(s) 66
HinfI GANTC 3 cut(s) 7, 67, 89
HpaII CCGG 6 cut(s) 44, 158, 220, 506, 512, 547
HphI GGTGA 5 cut(s) 526, 574, 580, 607, 616
Hpy166II GTNNAC 1 cut(s) 66
Hpy188I TCNGA 4 cut(s) 31, 59, 100, 285
Hpy188III TCNNGA 2 cut(s) 193, 332
Hpy8I GTNNAC 1 cut(s) 66
Hpy99I CGWCG 3 cut(s) 35, 85, 418
HpyAV CCTTC 4 cut(s) 426, 430, 550, 585
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 2 cut(s) 225, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 490
HpyF3I CTNAG 1 cut(s) 97
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 1 cut(s) 665
KpnI GGTACC 1 cut(s) 512
Kzo9I GATC 2 cut(s) 59, 115
LmnI GCTCC 2 cut(s) 410, 674
Lsp1109I GCAGC 2 cut(s) 252, 496
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 4 cut(s) 16, 257, 305, 374
MalI GATC 2 cut(s) 61, 117
MboI GATC 2 cut(s) 59, 115
MboII GAAGA 5 cut(s) 562, 565, 586, 589, 596
MluCI AATT 2 cut(s) 103, 363
MlyI GAGTC 2 cut(s) 61, 83
MmeI TCCRAC 2 cut(s) 54, 95
MnlI CCTC 6 cut(s) 226, 369, 521, 558, 564, 664
Mph1103I ATGCAT 1 cut(s) 667
MseI TTAA 1 cut(s) 327
MspA1I CMGCKG 1 cut(s) 487
MspI CCGG 6 cut(s) 44, 158, 220, 506, 512, 547
MspR9I CCNGG 2 cut(s) 158, 220
Mva1269I GAATGC 1 cut(s) 152
MwoI GCNNNNNNNGC 2 cut(s) 158, 490
NciI CCSGG 2 cut(s) 158, 220
NdeII GATC 2 cut(s) 59, 115
NlaIII CATG 1 cut(s) 665
NlaIV GGNNCC 1 cut(s) 510
NmuCI GTSAC 1 cut(s) 374
NsiI ATGCAT 1 cut(s) 667
PaeR7I CTCGAG 1 cut(s) 193
PctI GAATGC 1 cut(s) 152
PfeI GAWTC 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 457
PinAI ACCGGT 1 cut(s) 511
PkrI GCNGC 4 cut(s) 163, 242, 486, 637
PleI GAGTC 2 cut(s) 61, 83
PpsI GAGTC 2 cut(s) 61, 83
PshBI ATTAAT 1 cut(s) 327
PspN4I GGNNCC 1 cut(s) 510
PsyI GACNNNGTC 1 cut(s) 457
RsaI GTAC 4 cut(s) 199, 232, 467, 510
RsaNI GTAC 4 cut(s) 198, 231, 466, 509
SaqAI TTAA 1 cut(s) 327
SatI GCNGC 4 cut(s) 162, 241, 485, 636
Sau3AI GATC 2 cut(s) 59, 115
SchI GAGTC 2 cut(s) 61, 83
ScrFI CCNGG 2 cut(s) 158, 220
SetI ASST 7 cut(s) 218, 269, 296, 407, 461, 473, 679
Sfr274I CTCGAG 1 cut(s) 193
SlaI CTCGAG 1 cut(s) 193
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 2 cut(s) 103, 363
SsiI CCGC 6 cut(s) 111, 161, 184, 487, 560, 635
StyD4I CCNGG 2 cut(s) 156, 218
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 1 cut(s) 461
TaqI TCGA 2 cut(s) 13, 194
TasI AATT 2 cut(s) 103, 363
TatI WGTACW 1 cut(s) 465
TauI GCSGC 2 cut(s) 164, 638
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 2 cut(s) 240, 484
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 2 cut(s) 468, 623
TspGWI ACGGA 2 cut(s) 69, 596
TspRI CASTG 1 cut(s) 345
Tth111I GACNNNGTC 1 cut(s) 457
VspI ATTAAT 1 cut(s) 327
XapI RAATTY 1 cut(s) 103
XhoI CTCGAG 1 cut(s) 193
Zsp2I ATGCAT 1 cut(s) 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.