Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Forward (+)

11980200 .. 11986105

Gene Structure 5906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0134100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3009 bp

ATGGAAGGGACGAGTTTTGCAGCAGAATCTCAGGCAAAAGAGGTTCATTCTTCTAACAACAACCAGAGAAGTGATAACACAGTTGAGTGCTCTGGCAGTCCTGTAAGTCGAAAGATATCAGCTAGATGGGATCCAGATGAAGCATGCCGGCCTGTCATTGATGATGCACCTGTATTTTATCCAACTGCCGAGGAGTTCGAAAATACACTTGGTTACATAGCAAAGATTTGGCCACAGGCTGAATCTTATGGTATTTGTCGGATTGTCCCTCCACGTTCCTGGATCCCTCCTTGCCCTCTTAAAGAGAAAGACATGTGGGAAAATGCTAAATTCTCTACTCGTGTTCAGCAAGTTGACTTGCTTCAAAATAGAGAGTCCATGAAAAAGAAAACTAGAGGTCGGAAGCGAAAACGAAGAAGACACTCAAGGAGACGTGCAGAAGCTAATGCTGCTTCTGAGACCGATGAGAAGTTTGGGTTCCAGTCAGGATCAGACTTTACATTTGCAGAGTTTCAGAGACAAGCCTCTACTTTCAAGGAAAGTTACTTTGGAACACATGAATGTGAGGAGGGTTCAAATTCTGGTGGAACTAACAACAAAAGATGGGAACCCTCTGTGGAGGATATTGAAGGTGAATACTGGCGCATAGTAGAGCAACCAACAGATGAGGTTGAGGTTTACTATGGAGCTGACTTGGAAACAGGAGTATTTGGAAGTGGGTTTCCCAAGGCATCGTCTGTGGTAACTAGGAGTGAGTCAGATCATTATGCAATGTCAGGCTGGAATCTAAATAACTTGCCTCGCTTGCCTGGTTCTGTACTATGTTTTGAGGAAAGCGATATCTCGGGAGTTCTAGTCCCATGGCTCTATGTTGGGATGTGCTTTTCTTCGTTTTGTTGGCATGTTGAGGACCACCACCTCTATTCCCTAAATTATCTACACTTCGGTGACCCAAAGGTATGGTATGGAGTGCCCGGAAGCCATGCTACCTCTTTGGAACAAGCAATGAGAAAGCATTTGCCGGATTTGTTCGAGGAACAACCTGATTTACTCAATGAACTGGTCACCCAGCTATCTCCTTCAGTTTTAAAGTCTGAGGGTGTACCTGTGCATCGAGCTATCCAACATTCTGGGGAGTTTGTTCTTACCTTTCCGAGGGCATATCATTCTGGATTTAATTGTGGCTTCAATTGTGCTGAGGCAGTAAATGTCGCCCCTGTTGACTGGTTGCAACATGGCCAAACCGCAGTCGAGCTTTACAGTAAGCAGTGTCGCAAGACATCACTGTCACACGACAAATTGTTACTGGGGTCAGCTCTGGAAGCCGTGCAGGTCCTCGGGGAAATATCACTCGGAACAAAATTTATTACCAACCGGAGCTGGCAAAGAGTTTGTGGCAAAGATGGTGTGCTCACCAAAGCAGTTAAGAGACGAGTGGAGATGGAGGAGGAAAGACTGGATCGTCTTCCAATTTGTTGGAAGTCGCAAAAGATGGAAAGAGAATTTGATTCAAACACTGAGAGAGAATGCTTTTCTTGCTCCTATGACTTACACTTATCTGCTGCCAGCTGCAACTGCTCTCCTGACCGATTTTCATGTCTTAAACATGCAAAGCATTTCTGTTCATGTGAAATGACTCAGAGATATGTCCTTCTCCGCTACAGTATTGAGGAATTAAATTTGCTGGTTAAAGCATTGGAAGGGGAGTTGGATGCCATTCACGTATGGGCATCTAAGGATTCTGGAGTAGTTTCTATAGACTACACTCGTAAGTGCGCTGCTAAGAAGTCTAAGCTGGATCAAGATTCCAAGTCTTGCGATCCAATGGAAATTTTGCTTGCTTGCGCAGTTTCAGAAGATAAGGTTAACATGAATGGATCTTGCAGTTCCTCTAGTCCTGTTTCTTCTGCAGTAGTTCAGTCAGGATCACAGGATGGTCATAATGAAGATCAAACTTTGGCCGTGAATGCTGAAGCAAAGGTGGAGCATGATTGCAGTTTTGATTTGAATCTCAATTGTATGTCTGATGAACATGAAAGCAAGATAATTGACGTATCTGACGGCTGTGATAATAAGGCTAGTACAGTTGAGGAAGAGACATCCACATCAATGTCCAATCAAGAGAAGACTAGCACGTCCGAGGGTAATAAGTTGTTTGGTGTTGATCTTGGCTTATCACGTCCTGCTTCAAACATACCACCAATCAGTTCTTCACAAACTGAGATTGGCGATACCTCAGCTGTGAATGCATCCATGAGAGACCAAAGCTATCGATTAAGATGTTCGAGTGTTGTTGAGCCTTTGAATTTCGGATCTGTCATGGCTGGGAAATATTGGTGCACTAAGCAGGCCATATATCCAAAAGGGTTTAGAAGCCGAGTTAATTTCTACAGTGTGCTGGACCCAACAAAACTGTGTAGTTATATATCAGAAGTTCTCGATGCTGGGCTTCTTGGACCCCTATTTAAGGTTAGTTTAGAAGAATTCCCAGATGAGGCTTTTGCAAATGTATCAGCGGACAAGTGCTGGGAGATGGTACTACATAGACTAAACAATGAAATAAGTAGACGGAGTAGTCTAGATGAAAGAGGGCCCCCTTTACAGTCTTTGCAGAGCATTAATGGGTTTGCAATGTTTGGCTTTCTCTCCCAATCCATTGTTGAGGCTATTGAGGCCCTTGATCCTGATCATCTATGCACAGGGTACTGGAATCACAGGTTTATGCAGCAGCATTCATCTGTACCAAGTTGCTCTCTAGGAGTGCCAGAGACAAAGCTATTTGGTATAAACATGACAAACAAGGAGCATAATCAACCATCTGTGGAGGGTCATCACTTAATCGATGAGATGCAGTTAGTTTTACGAAGACTCTTAGAGAAGGCGAATCCAAATCCCGAAGAGTTAAGGACATTACATAGAATGTTATCCAGTCAGTCAGCCGAAGCAAGAGTGGCATGCGCAGAATTGATTGAAGAGATGCAGAGAAATGTAGATAACAGGAAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bHLH-MYC_N

Protein Analysis

1002

Amino Acids

112.43

Weight (kDa)

5.46

Isoelectric Point (pI)

55.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JmjN	PF02375	57 - 90	2.2e-15	jmjN domain
JmjC	PF02373	288 - 404	2.6e-46	JmjC domain, hydroxylase
zf-C5HC2	PF02928	510 - 560	1.8e-14	C5HC2 zinc finger
FYRN	PF05964	759 - 814	3e-12	F/Y-rich N-terminus
FYRC	PF05965	819 - 906	4.7e-21	F/Y rich C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	4 cut(s)	1285, 1461, 2134, 2574
Acc16I	TGCGCA	2 cut(s)	1846, 2959
Acc36I	ACCTGC	1 cut(s)	1321
AccI	GTMKAC	1 cut(s)	2566
AciI	CCGC	3 cut(s)	1245, 1657, 2516
AcoI	YGGCCR	3 cut(s)	230, 1237, 1959
AcsI	RAATTY	8 cut(s)	329, 577, 1361, 1502, 1678, 1830, 2305, 2483
AcuI	CTGAAG	2 cut(s)	1065, 1992
AfaI	GTAC	6 cut(s)	819, 1104, 2083, 2538, 2705, 2742
AfiI	CCNNNNNNNGG	3 cut(s)	1155, 2467, 2494
AflIII	ACRYGT	1 cut(s)	312
AjiI	CACGTC	3 cut(s)	434, 2136, 2180
AjnI	CCWGG	2 cut(s)	278, 808
AjuI	GAANNNNNNNTTGG	6 cut(s)	192, 224, 531, 563, 2194, 2226
AleI	CACNNNNGTG	1 cut(s)	945
Alw21I	GWGCWC	3 cut(s)	92, 1413, 2342
Alw26I	GTCTC	7 cut(s)	424, 452, 511, 1423, 2090, 2253, 2762
Alw44I	GTGCAC	1 cut(s)	2338
Ama87I	CYCGRG	2 cut(s)	844, 1337
AoxI	GGCC	7 cut(s)	149, 230, 1237, 1959, 2349, 2591, 2673
ApaI	GGGCCC	1 cut(s)	2595
ApaLI	GTGCAC	1 cut(s)	2338
ApeKI	GCWGC	7 cut(s)	20, 449, 1562, 1569, 1778, 2725, 2728
ApoI	RAATTY	8 cut(s)	329, 577, 1361, 1502, 1678, 1830, 2305, 2483
ArsI	GACNNNNNNTTYG	2 cut(s)	485, 517
AseI	ATTAAT	1 cut(s)	2619
AspLEI	GCGC	4 cut(s)	645, 1778, 1847, 2960
AspS9I	GGNCC	7 cut(s)	910, 1333, 2401, 2456, 2591, 2592, 2674
AsuC2I	CCSGG	1 cut(s)	975
AsuHPI	GGTGA	4 cut(s)	644, 959, 1057, 1405
AsuII	TTCGAA	1 cut(s)	198
AvaI	CYCGRG	2 cut(s)	844, 1337
AvaII	GGWCC	4 cut(s)	910, 1333, 2401, 2456
BaeGI	GKGCMC	3 cut(s)	975, 2342, 2595
BalI	TGGCCA	2 cut(s)	232, 1239
BamHI	GGATCC	2 cut(s)	130, 282
BanII	GRGCYC	1 cut(s)	2595
BarI	GAAGNNNNNNTAC	2 cut(s)	970, 1002
BauI	CACGAG	1 cut(s)	339
BbsI	GAAGAC	4 cut(s)	424, 1457, 2132, 2872
Bbv12I	GWGCWC	3 cut(s)	92, 1413, 2342
BbvCI	CCTCAGC	2 cut(s)	1197, 2236
BbvI	GCAGC	7 cut(s)	32, 436, 1549, 1556, 1765, 2737, 2740
BccI	CCATC	8 cut(s)	120, 597, 1397, 1435, 1486, 1928, 2527, 2824
BceAI	ACGGC	3 cut(s)	1310, 1946, 2077
BciT130I	CCWGG	2 cut(s)	280, 810
BclI	TGATCA	1 cut(s)	2686
BcnI	CCSGG	1 cut(s)	975
BcoDI	GTCTC	7 cut(s)	424, 452, 511, 1423, 2090, 2253, 2762
BfaI	CTAG	9 cut(s)	123, 393, 747, 854, 1893, 2079, 2130, 2579, 2756
BfmI	CTRYAG	4 cut(s)	1660, 1755, 1908, 2389
BfuAI	ACCTGC	1 cut(s)	1321
BisI	GCNGC	7 cut(s)	21, 450, 1563, 1570, 1779, 2726, 2729
BlsI	GCNGC	7 cut(s)	22, 451, 1564, 1571, 1780, 2727, 2730
Bme1390I	CCNGG	3 cut(s)	280, 810, 975
Bme18I	GGWCC	4 cut(s)	910, 1333, 2401, 2456
BmeT110I	CYCGRG	2 cut(s)	844, 1337
BmgBI	CACGTC	3 cut(s)	434, 2136, 2180
BmgT120I	GGNCC	7 cut(s)	910, 1333, 2401, 2456, 2591, 2592, 2674
BmiI	GGNNCC	8 cut(s)	132, 284, 479, 609, 2403, 2458, 2593, 2594
BmrFI	CCNGG	3 cut(s)	280, 810, 975
BmrI	ACTGGG	1 cut(s)	1316
BmsI	GCATC	9 cut(s)	154, 740, 1120, 1702, 1739, 2258, 2431, 2838, 2967
BmuI	ACTGGG	1 cut(s)	1316
BpiI	GAAGAC	4 cut(s)	424, 1457, 2132, 2872
BpmI	CTGGAG	1 cut(s)	1764
Bpu10I	CCTNAGC	2 cut(s)	1197, 2236
Bpu14I	TTCGAA	1 cut(s)	198
BpuEI	CTTGAG	1 cut(s)	409
BpuMI	CCSGG	1 cut(s)	975
Bsa29I	ATCGAT	2 cut(s)	2272, 2841
BsaAI	YACGTR	1 cut(s)	1723
BsaBI	GATNNNNATC	2 cut(s)	2007, 2685
BsaI	GGTCTC	2 cut(s)	452, 2253
BsaJI	CCNNGG	6 cut(s)	189, 726, 860, 1154, 1336, 2139
BsaWI	WCCGGW	1 cut(s)	1374
BsaXI	ACNNNNNCTCC	2 cut(s)	840, 870
Bsc4I	CCNNNNNNNGG	3 cut(s)	1155, 2467, 2494
Bse118I	RCCGGY	1 cut(s)	147
Bse1I	ACTGG	8 cut(s)	481, 644, 1065, 1229, 1311, 1461, 2711, 2928
Bse3DI	GCAATG	3 cut(s)	777, 1011, 2637
Bse8I	GATNNNNATC	2 cut(s)	2007, 2685
BseBI	CCWGG	2 cut(s)	280, 810
BseCI	ATCGAT	2 cut(s)	2272, 2841
BseDI	CCNNGG	6 cut(s)	189, 726, 860, 1154, 1336, 2139
BseGI	GGATG	5 cut(s)	882, 1717, 1939, 2099, 2249
BseJI	GATNNNNATC	2 cut(s)	2007, 2685
BseLI	CCNNNNNNNGG	3 cut(s)	1155, 2467, 2494
BseMI	GCAATG	3 cut(s)	777, 1011, 2637
BseMII	CTCAG	8 cut(s)	44, 447, 1086, 1188, 1509, 1652, 2211, 2250
BseNI	ACTGG	8 cut(s)	481, 644, 1065, 1229, 1311, 1461, 2711, 2928
BseRI	GAGGAG	3 cut(s)	206, 581, 1460
BseSI	GKGCMC	3 cut(s)	975, 2342, 2595
BseXI	GCAGC	7 cut(s)	32, 436, 1549, 1556, 1765, 2737, 2740
BseYI	CCCAGC	4 cut(s)	1068, 2324, 2444, 2526
BsgI	GTGCAG	2 cut(s)	456, 1349
BshFI	GGCC	7 cut(s)	151, 232, 1239, 1961, 2351, 2593, 2675
BshVI	ATCGAT	2 cut(s)	2272, 2841
BsiHKAI	GWGCWC	3 cut(s)	92, 1413, 2342
BsiHKCI	CYCGRG	2 cut(s)	844, 1337
BsiSI	CCGG	4 cut(s)	148, 975, 1022, 1375
BslFI	GGGAC	3 cut(s)	22, 251, 842
BslI	CCNNNNNNNGG	3 cut(s)	1155, 2467, 2494
BsmAI	GTCTC	7 cut(s)	424, 452, 511, 1423, 2090, 2253, 2762
BsmBI	CGTCTC	2 cut(s)	424, 1423
BsmFI	GGGAC	3 cut(s)	22, 251, 842
BsmI	GAATGC	4 cut(s)	1532, 1972, 2251, 2731
BsnI	GGCC	7 cut(s)	151, 232, 1239, 1961, 2351, 2593, 2675
Bso31I	GGTCTC	2 cut(s)	452, 2253
BsoBI	CYCGRG	2 cut(s)	844, 1337
Bsp119I	TTCGAA	1 cut(s)	198
Bsp120I	GGGCCC	1 cut(s)	2591
Bsp1286I	GDGCHC	5 cut(s)	92, 975, 1413, 2342, 2595
Bsp19I	CCATGG	1 cut(s)	860
BspACI	CCGC	3 cut(s)	1245, 1657, 2516
BspANI	GGCC	7 cut(s)	151, 232, 1239, 1961, 2351, 2593, 2675
BspCNI	CTCAG	8 cut(s)	43, 448, 1087, 1189, 1510, 1651, 2212, 2249
BspDI	ATCGAT	2 cut(s)	2272, 2841
BspLI	GGNNCC	8 cut(s)	132, 284, 479, 609, 2403, 2458, 2593, 2594
BspMAI	CTGCAG	1 cut(s)	1912
BspMI	ACCTGC	1 cut(s)	1321
BspT104I	TTCGAA	1 cut(s)	198
BspTNI	GGTCTC	2 cut(s)	452, 2253
BsrDI	GCAATG	3 cut(s)	777, 1011, 2637
BsrFI	RCCGGY	1 cut(s)	147
BsrI	ACTGG	8 cut(s)	481, 644, 1065, 1229, 1311, 1461, 2711, 2928
BssAI	RCCGGY	1 cut(s)	147
BssECI	CCNNGG	6 cut(s)	189, 726, 860, 1154, 1336, 2139
BssSI	CACGAG	1 cut(s)	339
BssT1I	CCWWGG	2 cut(s)	726, 860
Bst2BI	CACGAG	1 cut(s)	339
Bst2UI	CCWGG	2 cut(s)	280, 810
Bst4CI	ACNGT	8 cut(s)	82, 1262, 1287, 1664, 2086, 2393, 2415, 2604
Bst6I	CTCTTC	3 cut(s)	2088, 2892, 2967
BstBAI	YACGTR	1 cut(s)	1723
BstBI	TTCGAA	1 cut(s)	198
BstC8I	GCNNGC	9 cut(s)	145, 149, 806, 1382, 1567, 1839, 1843, 2349, 2956
BstDSI	CCRYGG	1 cut(s)	860
BstEII	GGTNACC	2 cut(s)	947, 1063
BstENI	CCTNNNNNAGG	2 cut(s)	1153, 2465
BstF5I	GGATG	5 cut(s)	882, 1717, 1939, 2099, 2249
BstHHI	GCGC	4 cut(s)	645, 1778, 1847, 2960
BstMAI	GTCTC	7 cut(s)	424, 452, 511, 1423, 2090, 2253, 2762
BstMWI	GCNNNNNNNGC	9 cut(s)	449, 805, 1322, 1536, 1575, 1967, 2246, 2672, 2951
BstNI	CCWGG	2 cut(s)	280, 810
BstNSI	RCATGY	5 cut(s)	147, 316, 905, 1610, 2958
BstPI	GGTNACC	2 cut(s)	947, 1063
BstSCI	CCNGG	3 cut(s)	278, 808, 973
BstSFI	CTRYAG	4 cut(s)	1660, 1755, 1908, 2389
BstSLI	GKGCMC	3 cut(s)	975, 2342, 2595
BstV1I	GCAGC	7 cut(s)	32, 436, 1549, 1556, 1765, 2737, 2740
BstV2I	GAAGAC	4 cut(s)	424, 1457, 2132, 2872
BstX2I	RGATCY	4 cut(s)	130, 282, 1877, 2312
BstXI	CCANNNNNNTGG	4 cut(s)	279, 960, 1130, 1476
BstYI	RGATCY	4 cut(s)	130, 282, 1877, 2312
Bsu15I	ATCGAT	2 cut(s)	2272, 2841
BsuRI	GGCC	7 cut(s)	151, 232, 1239, 1961, 2351, 2593, 2675
BsuTUI	ATCGAT	2 cut(s)	2272, 2841
BtgI	CCRYGG	1 cut(s)	860
BtrI	CACGTC	3 cut(s)	434, 2136, 2180
BtsCI	GGATG	5 cut(s)	882, 1717, 1939, 2099, 2249
BtsI	GCAGTG	1 cut(s)	1274
BtsIMutI	CAGTG	4 cut(s)	1274, 1283, 1515, 2398
BveI	ACCTGC	1 cut(s)	1321
Cac8I	GCNNGC	9 cut(s)	145, 149, 806, 1382, 1567, 1839, 1843, 2349, 2956
CfoI	GCGC	4 cut(s)	645, 1778, 1847, 2960
Cfr10I	RCCGGY	1 cut(s)	147
Cfr13I	GGNCC	7 cut(s)	910, 1333, 2401, 2456, 2591, 2592, 2674
ClaI	ATCGAT	2 cut(s)	2272, 2841
Csp6I	GTAC	6 cut(s)	818, 1103, 2082, 2537, 2704, 2741
CviQI	GTAC	6 cut(s)	818, 1103, 2082, 2537, 2704, 2741
DraI	TTTAAA	1 cut(s)	1089
DrdI	GACNNNNNNGTC	4 cut(s)	1285, 1461, 2134, 2574
DseDI	GACNNNNNNGTC	4 cut(s)	1285, 1461, 2134, 2574
EaeI	YGGCCR	3 cut(s)	230, 1237, 1959
Eam1104I	CTCTTC	3 cut(s)	2088, 2892, 2967
EarI	CTCTTC	3 cut(s)	2088, 2892, 2967
Eco130I	CCWWGG	2 cut(s)	726, 860
Eco24I	GRGCYC	1 cut(s)	2595
Eco31I	GGTCTC	2 cut(s)	452, 2253
Eco32I	GATATC	2 cut(s)	117, 841
Eco47I	GGWCC	4 cut(s)	910, 1333, 2401, 2456
Eco57I	CTGAAG	2 cut(s)	1065, 1992
Eco88I	CYCGRG	2 cut(s)	844, 1337
Eco91I	GGTNACC	2 cut(s)	947, 1063
EcoNI	CCTNNNNNAGG	2 cut(s)	1153, 2465
EcoO109I	RGGNCCY	4 cut(s)	1333, 2591, 2592, 2674
EcoO65I	GGTNACC	2 cut(s)	947, 1063
EcoRI	GAATTC	1 cut(s)	2483
EcoRII	CCWGG	2 cut(s)	278, 808
EcoRV	GATATC	2 cut(s)	117, 841
EcoT14I	CCWWGG	2 cut(s)	726, 860
EcoT22I	ATGCAT	1 cut(s)	2251
EcoT38I	GRGCYC	1 cut(s)	2595
ErhI	CCWWGG	2 cut(s)	726, 860
Esp3I	CGTCTC	2 cut(s)	424, 1423
FaqI	GGGAC	3 cut(s)	22, 251, 842
FbaI	TGATCA	1 cut(s)	2686
FblI	GTMKAC	1 cut(s)	2566
Fnu4HI	GCNGC	7 cut(s)	21, 450, 1563, 1570, 1779, 2726, 2729
FokI	GGATG	5 cut(s)	889, 1724, 1946, 2086, 2236
FriOI	GRGCYC	1 cut(s)	2595
Fsp4HI	GCNGC	7 cut(s)	21, 450, 1563, 1570, 1779, 2726, 2729
FspBI	CTAG	9 cut(s)	123, 393, 747, 854, 1893, 2079, 2130, 2579, 2756
FspI	TGCGCA	2 cut(s)	1846, 2959
GlaI	GCGC	4 cut(s)	644, 1777, 1846, 2959
GluI	GCNGC	7 cut(s)	21, 450, 1563, 1570, 1779, 2726, 2729
GsaI	CCCAGC	4 cut(s)	1072, 2328, 2448, 2530
GsuI	CTGGAG	1 cut(s)	1764
HaeIII	GGCC	7 cut(s)	151, 232, 1239, 1961, 2351, 2593, 2675
HapII	CCGG	4 cut(s)	148, 975, 1022, 1375
HhaI	GCGC	4 cut(s)	645, 1778, 1847, 2960
Hin6I	GCGC	4 cut(s)	643, 1776, 1845, 2958
HinP1I	GCGC	4 cut(s)	643, 1776, 1845, 2958
HincII	GTYRAC	3 cut(s)	355, 1222, 1867
HindII	GTYRAC	3 cut(s)	355, 1222, 1867
HpaI	GTTAAC	1 cut(s)	1867
HpaII	CCGG	4 cut(s)	148, 975, 1022, 1375
HphI	GGTGA	4 cut(s)	644, 959, 1057, 1405
Hpy166II	GTNNAC	7 cut(s)	355, 679, 1103, 1222, 1867, 2340, 2567
Hpy8I	GTNNAC	7 cut(s)	355, 679, 1103, 1222, 1867, 2340, 2567
HpyAV	CCTTC	5 cut(s)	623, 1089, 1661, 1694, 2872
HpyCH4III	ACNGT	8 cut(s)	82, 1262, 1287, 1664, 2086, 2393, 2415, 2604
HpyCH4IV	ACGT	6 cut(s)	274, 433, 1722, 2052, 2135, 2179
HpyF10VI	GCNNNNNNNGC	9 cut(s)	449, 805, 1322, 1536, 1575, 1967, 2246, 2672, 2951
HpySE526I	ACGT	6 cut(s)	274, 433, 1722, 2052, 2135, 2179
HspAI	GCGC	4 cut(s)	643, 1776, 1845, 2958
KroI	GCCGGC	1 cut(s)	147
KroNI	GCCGGC	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	2686
KspAI	GTTAAC	1 cut(s)	1867
LmnI	GCTCC	5 cut(s)	686, 1377, 1544, 1984, 2803
Lsp1109I	GCAGC	7 cut(s)	32, 436, 1549, 1556, 1765, 2737, 2740
LweI	GCATC	9 cut(s)	154, 740, 1120, 1702, 1739, 2258, 2431, 2838, 2967
MaeI	CTAG	9 cut(s)	123, 393, 747, 854, 1893, 2079, 2130, 2579, 2756
MaeII	ACGT	6 cut(s)	274, 433, 1722, 2052, 2135, 2179
MaeIII	GTNAC	7 cut(s)	212, 542, 742, 947, 1063, 1287, 1302
MfeI	CAATTG	2 cut(s)	1189, 2014
MflI	RGATCY	4 cut(s)	130, 282, 1877, 2312
MhlI	GDGCHC	5 cut(s)	92, 975, 1413, 2342, 2595
MlsI	TGGCCA	2 cut(s)	232, 1239
MluNI	TGGCCA	2 cut(s)	232, 1239
MlyI	GAGTC	4 cut(s)	383, 764, 1630, 2862
MmeI	TCCRAC	6 cut(s)	206, 239, 380, 1147, 1457, 1689
Mox20I	TGGCCA	2 cut(s)	232, 1239
Mph1103I	ATGCAT	1 cut(s)	2251
MroNI	GCCGGC	1 cut(s)	147
MscI	TGGCCA	2 cut(s)	232, 1239
MslI	CAYNNNNRTG	4 cut(s)	559, 561, 945, 2108
Msp20I	TGGCCA	2 cut(s)	232, 1239
MspA1I	CMGCKG	3 cut(s)	1569, 2240, 2516
MspI	CCGG	4 cut(s)	148, 975, 1022, 1375
MspR9I	CCNGG	3 cut(s)	280, 810, 975
MunI	CAATTG	2 cut(s)	1189, 2014
Mva1269I	GAATGC	4 cut(s)	1532, 1972, 2251, 2731
MvaI	CCWGG	2 cut(s)	280, 810
MwoI	GCNNNNNNNGC	9 cut(s)	449, 805, 1322, 1536, 1575, 1967, 2246, 2672, 2951
NaeI	GCCGGC	1 cut(s)	149
NciI	CCSGG	1 cut(s)	975
NcoI	CCATGG	1 cut(s)	860
NgoMIV	GCCGGC	1 cut(s)	147
NlaIV	GGNNCC	8 cut(s)	132, 284, 479, 609, 2403, 2458, 2593, 2594
NmeAIII	GCCGAG	2 cut(s)	214, 2402
NmuCI	GTSAC	3 cut(s)	947, 1063, 1287
NsbI	TGCGCA	2 cut(s)	1846, 2959
NsiI	ATGCAT	1 cut(s)	2251
NspI	RCATGY	5 cut(s)	147, 316, 905, 1610, 2958
NspV	TTCGAA	1 cut(s)	198
OliI	CACNNNNGTG	1 cut(s)	945
PaeI	GCATGC	2 cut(s)	147, 2958
PciI	ACATGT	1 cut(s)	312
PctI	GAATGC	4 cut(s)	1532, 1972, 2251, 2731
PdiI	GCCGGC	1 cut(s)	149
PfeI	GAWTC	9 cut(s)	26, 242, 784, 1508, 1739, 1805, 2008, 2710, 2884
PfoI	TCCNGGA	1 cut(s)	278
PkrI	GCNGC	7 cut(s)	22, 451, 1564, 1571, 1780, 2727, 2730
PleI	GAGTC	4 cut(s)	382, 763, 1630, 2862
PpsI	GAGTC	4 cut(s)	382, 763, 1630, 2862
Ppu21I	YACGTR	1 cut(s)	1723
PpuMI	RGGWCCY	1 cut(s)	1333
PscI	ACATGT	1 cut(s)	312
PshBI	ATTAAT	1 cut(s)	2619
Psp5II	RGGWCCY	1 cut(s)	1333
Psp6I	CCWGG	2 cut(s)	278, 808
PspEI	GGTNACC	2 cut(s)	947, 1063
PspFI	CCCAGC	4 cut(s)	1068, 2324, 2444, 2526
PspGI	CCWGG	2 cut(s)	278, 808
PspN4I	GGNNCC	8 cut(s)	132, 284, 479, 609, 2403, 2458, 2593, 2594
PspOMI	GGGCCC	1 cut(s)	2591
PspPI	GGNCC	7 cut(s)	910, 1333, 2401, 2456, 2591, 2592, 2674
PspPPI	RGGWCCY	1 cut(s)	1333
PstI	CTGCAG	1 cut(s)	1912
PsuI	RGATCY	4 cut(s)	130, 282, 1877, 2312
PvuII	CAGCTG	2 cut(s)	1569, 2240
RsaI	GTAC	6 cut(s)	819, 1104, 2083, 2538, 2705, 2742
RsaNI	GTAC	6 cut(s)	818, 1103, 2082, 2537, 2704, 2741
RseI	CAYNNNNRTG	4 cut(s)	559, 561, 945, 2108
SatI	GCNGC	7 cut(s)	21, 450, 1563, 1570, 1779, 2726, 2729
Sau96I	GGNCC	7 cut(s)	910, 1333, 2401, 2456, 2591, 2592, 2674
SchI	GAGTC	4 cut(s)	383, 764, 1630, 2862
ScrFI	CCNGG	3 cut(s)	280, 810, 975
SduI	GDGCHC	5 cut(s)	92, 975, 1413, 2342, 2595
SfaNI	GCATC	9 cut(s)	154, 740, 1120, 1702, 1739, 2258, 2431, 2838, 2967
SfcI	CTRYAG	4 cut(s)	1660, 1755, 1908, 2389
SfuI	TTCGAA	1 cut(s)	198
SinI	GGWCC	4 cut(s)	910, 1333, 2401, 2456
SmiMI	CAYNNNNRTG	4 cut(s)	559, 561, 945, 2108
SmlI	CTYRAG	1 cut(s)	424
SmoI	CTYRAG	1 cut(s)	424
SphI	GCATGC	2 cut(s)	147, 2958
SsiI	CCGC	3 cut(s)	1245, 1657, 2516
SspI	AATATT	1 cut(s)	2333
SspMI	CTAG	9 cut(s)	123, 393, 747, 854, 1893, 2079, 2130, 2579, 2756
StyD4I	CCNGG	3 cut(s)	278, 808, 973
StyI	CCWWGG	2 cut(s)	726, 860
TaaI	ACNGT	8 cut(s)	82, 1262, 1287, 1664, 2086, 2393, 2415, 2604
TaiI	ACGT	6 cut(s)	277, 436, 1725, 2055, 2138, 2182
TaqI	TCGA	9 cut(s)	109, 198, 1032, 1114, 1251, 2272, 2285, 2439, 2841
TaqII	GACCGA	2 cut(s)	476, 1602
TatI	WGTACW	2 cut(s)	817, 2081
TfiI	GAWTC	9 cut(s)	26, 242, 784, 1508, 1739, 1805, 2008, 2710, 2884
TscAI	CASTG	4 cut(s)	1274, 1290, 1522, 2398
TseFI	GTSAC	3 cut(s)	947, 1063, 1287
TseI	GCWGC	7 cut(s)	20, 449, 1562, 1569, 1778, 2725, 2728
Tsp45I	GTSAC	3 cut(s)	947, 1063, 1287
TspGWI	ACGGA	1 cut(s)	2584
TspRI	CASTG	4 cut(s)	1274, 1290, 1522, 2398
VneI	GTGCAC	1 cut(s)	2338
VpaK11BI	GGWCC	4 cut(s)	910, 1333, 2401, 2456
VspI	ATTAAT	1 cut(s)	2619
XagI	CCTNNNNNAGG	2 cut(s)	1153, 2465
XapI	RAATTY	8 cut(s)	329, 577, 1361, 1502, 1678, 1830, 2305, 2483
XbaI	TCTAGA	1 cut(s)	2578
XceI	RCATGY	5 cut(s)	147, 316, 905, 1610, 2958
XmiI	GTMKAC	1 cut(s)	2566
XspI	CTAG	9 cut(s)	123, 393, 747, 854, 1893, 2079, 2130, 2579, 2756
Zsp2I	ATGCAT	1 cut(s)	2251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.