Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Reverse (-)

22184808 .. 22186015

Gene Structure 1208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g23910.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAATTATGGAGGAGATTGTTGTGGTCCTCACTCACTCACTCACTCTCCCACTCCTCCTGCCCCTTCATCACTTCTACTTATTACGCTTCTCCTTCCTTCCCCCTCCCCTCGTTGCACCACATCCCAACTCCCAAACCAAACCAAACCAAATAATAATATCAATCCATTGATGGAGGGGATGAGTAAATTGGACTCGGACAAGCAGATGAAGGAGAAGCCGCATGTGGTGGTGGTGGTGAAGAAGGAGGAGGAGGAATTTGATGATGAGCTGCAAGTGGACAGGAAGAAGAAAGGTAAGAGATCGTCGTCGTCGTCATCAGGAGGAGGAGGAGGAGGTGCAATGAGACGGTGTCAGGCAGACAGGTGCACAGCTGATCTGAGTGATGAAAAGAAATATCACAGAAAGCATAAGGTTTGTGACCTTCATTCCAAGTCTCAGGTTGTGCTTGTCTCTGGCCTCCACCAAAGGTTTTGCCAGCAATGCAGCAGGTATTGCAATTTTCATTTTTATTCTCTGGTTTCTATGAATTTTTTTTTCCGAGGATTTCATGAGCTATCAGAATTTGACGACACCAAACGGAGTTGTCGTAGGCGTTTGTCAGGACACAATGAACGACGAAGGAAGAATCCAGCCGAGTCTCATGCTGTGGAAGGCTCAAGCCGCAATGTTGGTACAAGGACTCAGTCCACTCACAAGCACTTCCAAATCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009911 GO:0010228 GO:0010229 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

239

Amino Acids

26.9

Weight (kDa)

9.47

Isoelectric Point (pI)

67.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	480
AciI	CCGC	2 cut(s)	221, 664
AcsI	RAATTY	3 cut(s)	257, 529, 563
AfaI	GTAC	1 cut(s)	676
AluBI	AGCT	3 cut(s)	271, 374, 556
AluI	AGCT	3 cut(s)	271, 374, 556
Alw21I	GWGCWC	1 cut(s)	371
Alw26I	GTCTC	4 cut(s)	340, 441, 457, 645
Alw44I	GTGCAC	1 cut(s)	367
AoxI	GGCC	1 cut(s)	457
ApaLI	GTGCAC	1 cut(s)	367
ApeKI	GCWGC	2 cut(s)	271, 486
ApoI	RAATTY	3 cut(s)	257, 529, 563
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	250
AvaII	GGWCC	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	371
Bbv12I	GWGCWC	1 cut(s)	371
BbvI	GCAGC	2 cut(s)	258, 498
BccI	CCATC	1 cut(s)	166
BcgI	CGANNNNNNTGC	2 cut(s)	626, 660
BcoDI	GTCTC	4 cut(s)	340, 441, 457, 645
BfuAI	ACCTGC	1 cut(s)	480
BisI	GCNGC	4 cut(s)	221, 272, 487, 664
BlsI	GCNGC	4 cut(s)	222, 273, 488, 665
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	643
BsaJI	CCNNGG	1 cut(s)	541
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 574, 604
Bse3DI	GCAATG	3 cut(s)	348, 488, 673
BseDI	CCNNGG	1 cut(s)	541
BseGI	GGATG	2 cut(s)	122, 186
BseMI	GCAATG	3 cut(s)	348, 488, 673
BseMII	CTCAG	3 cut(s)	371, 452, 698
BseRI	GAGGAG	8 cut(s)	27, 45, 263, 266, 339, 342, 345, 348
BseSI	GKGCMC	1 cut(s)	371
BseXI	GCAGC	2 cut(s)	258, 498
BshFI	GGCC	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	371
BsmAI	GTCTC	4 cut(s)	340, 441, 457, 645
BsmBI	CGTCTC	1 cut(s)	340
BsnI	GGCC	1 cut(s)	459
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp143I	GATC	2 cut(s)	302, 376
BspACI	CCGC	2 cut(s)	221, 664
BspANI	GGCC	1 cut(s)	459
BspCNI	CTCAG	3 cut(s)	372, 451, 697
BspHI	TCATGA	1 cut(s)	550
BspMI	ACCTGC	1 cut(s)	480
BsrDI	GCAATG	3 cut(s)	348, 488, 673
BssECI	CCNNGG	1 cut(s)	541
BssMI	GATC	2 cut(s)	302, 376
Bst4CI	ACNGT	1 cut(s)	351
BstAPI	GCANNNNNTGC	1 cut(s)	495
BstC8I	GCNNGC	1 cut(s)	479
BstDEI	CTNAG	3 cut(s)	380, 438, 684
BstF5I	GGATG	2 cut(s)	122, 186
BstKTI	GATC	2 cut(s)	305, 379
BstMAI	GTCTC	4 cut(s)	340, 441, 457, 645
BstMBI	GATC	2 cut(s)	302, 376
BstMWI	GCNNNNNNNGC	3 cut(s)	483, 495, 663
BstNSI	RCATGY	1 cut(s)	227
BstSLI	GKGCMC	1 cut(s)	371
BstV1I	GCAGC	2 cut(s)	258, 498
BsuRI	GGCC	1 cut(s)	459
BtsCI	GGATG	2 cut(s)	122, 186
BveI	ACCTGC	1 cut(s)	480
Cac8I	GCNNGC	1 cut(s)	479
CciI	TCATGA	1 cut(s)	550
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	675
CviAII	CATG	3 cut(s)	224, 551, 644
CviJI	RGCY	8 cut(s)	220, 271, 374, 459, 556, 635, 657, 663
CviKI_1	RGCY	8 cut(s)	220, 271, 374, 459, 556, 635, 657, 663
CviQI	GTAC	1 cut(s)	675
DdeI	CTNAG	3 cut(s)	380, 438, 684
DpnI	GATC	2 cut(s)	304, 378
DpnII	GATC	2 cut(s)	302, 376
Eco47I	GGWCC	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	3 cut(s)	227, 554, 647
FaiI	YATR	6 cut(s)	9, 225, 411, 527, 552, 645
FatI	CATG	3 cut(s)	223, 550, 643
Fnu4HI	GCNGC	4 cut(s)	221, 272, 487, 664
FokI	GGATG	2 cut(s)	109, 193
Fsp4HI	GCNGC	4 cut(s)	221, 272, 487, 664
GluI	GCNGC	4 cut(s)	221, 272, 487, 664
HaeIII	GGCC	1 cut(s)	459
Hin1II	CATG	3 cut(s)	227, 554, 647
HinfI	GANTC	4 cut(s)	194, 628, 638, 682
HphI	GGTGA	1 cut(s)	250
Hpy166II	GTNNAC	3 cut(s)	280, 369, 690
Hpy188I	TCNGA	4 cut(s)	199, 381, 542, 562
Hpy188III	TCNNGA	3 cut(s)	321, 551, 603
Hpy8I	GTNNAC	3 cut(s)	280, 369, 690
Hpy99I	CGWCG	4 cut(s)	310, 313, 316, 621
HpyAV	CCTTC	8 cut(s)	75, 104, 108, 205, 238, 434, 615, 647
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4V	TGCA	6 cut(s)	117, 274, 341, 369, 486, 498
HpyF10VI	GCNNNNNNNGC	3 cut(s)	483, 495, 663
HpyF3I	CTNAG	3 cut(s)	380, 438, 684
Hsp92II	CATG	3 cut(s)	227, 554, 647
Kzo9I	GATC	2 cut(s)	302, 376
Lsp1109I	GCAGC	2 cut(s)	258, 498
MaeIII	GTNAC	1 cut(s)	419
MalI	GATC	2 cut(s)	304, 378
MboI	GATC	2 cut(s)	302, 376
MboII	GAAGA	4 cut(s)	253, 298, 301, 637
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	6 cut(s)	4, 188, 257, 499, 529, 563
MlyI	GAGTC	3 cut(s)	188, 647, 676
MspA1I	CMGCKG	1 cut(s)	374
MwoI	GCNNNNNNNGC	3 cut(s)	483, 495, 663
NdeII	GATC	2 cut(s)	302, 376
NlaIII	CATG	3 cut(s)	227, 554, 647
NmeAIII	GCCGAG	1 cut(s)	661
NmuCI	GTSAC	1 cut(s)	419
NspI	RCATGY	1 cut(s)	227
PagI	TCATGA	1 cut(s)	550
PcsI	WCGNNNNNNNCGW	2 cut(s)	311, 586
PfeI	GAWTC	1 cut(s)	628
PflFI	GACNNNGTC	2 cut(s)	351, 685
PkrI	GCNGC	4 cut(s)	222, 273, 488, 665
PleI	GAGTC	3 cut(s)	188, 646, 676
PpsI	GAGTC	3 cut(s)	188, 646, 676
PspPI	GGNCC	1 cut(s)	26
PsyI	GACNNNGTC	2 cut(s)	351, 685
PvuII	CAGCTG	1 cut(s)	374
RsaI	GTAC	1 cut(s)	676
RsaNI	GTAC	1 cut(s)	675
SatI	GCNGC	4 cut(s)	221, 272, 487, 664
Sau3AI	GATC	2 cut(s)	302, 376
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	3 cut(s)	188, 647, 676
SduI	GDGCHC	1 cut(s)	371
SinI	GGWCC	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	658
SmoI	CTYRAG	1 cut(s)	658
Sse9I	AATT	6 cut(s)	4, 188, 257, 499, 529, 563
SsiI	CCGC	2 cut(s)	221, 664
TaaI	ACNGT	1 cut(s)	351
TasI	AATT	6 cut(s)	4, 188, 257, 499, 529, 563
TauI	GCSGC	2 cut(s)	223, 666
TfiI	GAWTC	1 cut(s)	628
TseFI	GTSAC	1 cut(s)	419
TseI	GCWGC	2 cut(s)	271, 486
Tsp45I	GTSAC	1 cut(s)	419
TspDTI	ATGAA	9 cut(s)	17, 57, 224, 402, 416, 494, 539, 542, 627
TspGWI	ACGGA	1 cut(s)	595
Tth111I	GACNNNGTC	2 cut(s)	351, 685
VneI	GTGCAC	1 cut(s)	367
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	3 cut(s)	257, 529, 563
XceI	RCATGY	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.