Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Forward (+)

43323052 .. 43324273

Gene Structure 1222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018949

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAAGAGAGTAAAAGCAAGCAGAGGAAGCAGGAGAACCCCCATGTGGTGGTGAAGGAGGAGGAAGAGGAGGAGGAGGATCTGTACAGTAAGAAGAAGAAATTACAAGTTGTGGGTGGAGGTGGAAGTGGAAGTGGAAGTGGAAGTGGATCTGTGAAGAACCAGAACCTAAACCAGATGATGAGATGTTGTCAGGCTGACAAGTGTACAGTTGATCTGAGTGATGTAAAGCTCTACCATAGAAGGCATAAGGTGTGTGACCATCATTCTAAGGCTCCAGTTGTGCTTTTGGCTGGGATCAGCCAAAGATTTTGCCAGCAATGCAGCAGATTTCATGAGCTATCAGAATTTGATGACACCAAGCGGAGTTGTCGGAGGCGCTTGGCTGGCCACAATGAACGGCGAAGGAAGAATTCCTCCGAGTCTTATGCAGAAGGCACAAGCCGCAAAGGGACTAGTACTCAGTCATGTGGGAAGGTTGATGATATGGGATCTGGAAGAATTCAGATCAACATCCAAGAAAACTCGACTTGCAAGCATTTCCAGATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

185

Amino Acids

20.83

Weight (kDa)

9.16

Isoelectric Point (pI)

67.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	64 - 137	9.6e-33	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	49
AciI	CCGC	2 cut(s)	364, 445
AclWI	GGATC	4 cut(s)	87, 157, 305, 499
AcoI	YGGCCR	1 cut(s)	388
AcsI	RAATTY	3 cut(s)	347, 412, 501
AfaI	GTAC	3 cut(s)	86, 208, 460
AfiI	CCNNNNNNNGG	2 cut(s)	46, 49
AhlI	ACTAGT	1 cut(s)	455
AluBI	AGCT	2 cut(s)	232, 340
AluI	AGCT	2 cut(s)	232, 340
AlwI	GGATC	4 cut(s)	87, 157, 305, 499
AoxI	GGCC	1 cut(s)	388
ApeKI	GCWGC	1 cut(s)	324
ApoI	RAATTY	3 cut(s)	347, 412, 501
AspLEI	GCGC	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	64
BalI	TGGCCA	1 cut(s)	390
BbvI	GCAGC	1 cut(s)	336
BccI	CCATC	1 cut(s)	270
BceAI	ACGGC	1 cut(s)	416
BcgI	CGANNNNNNTGC	2 cut(s)	410, 444
BcuI	ACTAGT	1 cut(s)	455
BfaI	CTAG	1 cut(s)	456
BfoI	RGCGCY	1 cut(s)	382
BisI	GCNGC	2 cut(s)	325, 445
BlsI	GCNGC	2 cut(s)	326, 446
BmcAI	AGTACT	1 cut(s)	460
BmiI	GGNNCC	1 cut(s)	276
BpmI	CTGGAG	1 cut(s)	261
BsaBI	GATNNNNATC	1 cut(s)	512
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 49
Bse1I	ACTGG	1 cut(s)	278
Bse3DI	GCAATG	1 cut(s)	326
Bse8I	GATNNNNATC	1 cut(s)	512
BseGI	GGATG	1 cut(s)	513
BseJI	GATNNNNATC	1 cut(s)	512
BseLI	CCNNNNNNNGG	2 cut(s)	46, 49
BseMI	GCAATG	1 cut(s)	326
BseMII	CTCAG	2 cut(s)	209, 476
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	4 cut(s)	74, 83, 86, 89
BseXI	GCAGC	1 cut(s)	336
BseYI	CCCAGC	1 cut(s)	293
BshFI	GGCC	1 cut(s)	390
BslFI	GGGAC	1 cut(s)	466
BslI	CCNNNNNNNGG	2 cut(s)	46, 49
BsmFI	GGGAC	1 cut(s)	466
BsnI	GGCC	1 cut(s)	390
Bsp1407I	TGTACA	2 cut(s)	84, 206
Bsp143I	GATC	7 cut(s)	79, 149, 214, 297, 491, 507, 546
BspACI	CCGC	2 cut(s)	364, 445
BspANI	GGCC	1 cut(s)	390
BspCNI	CTCAG	2 cut(s)	210, 475
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	276
BspPI	GGATC	4 cut(s)	87, 157, 305, 499
BsrDI	GCAATG	1 cut(s)	326
BsrGI	TGTACA	2 cut(s)	84, 206
BsrI	ACTGG	1 cut(s)	278
BssMI	GATC	7 cut(s)	79, 149, 214, 297, 491, 507, 546
Bst4CI	ACNGT	2 cut(s)	89, 211
Bst6I	CTCTTC	1 cut(s)	60
BstAUI	TGTACA	2 cut(s)	84, 206
BstC8I	GCNNGC	4 cut(s)	20, 317, 388, 536
BstDEI	CTNAG	3 cut(s)	218, 270, 462
BstF5I	GGATG	1 cut(s)	513
BstH2I	RGCGCY	1 cut(s)	382
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	7 cut(s)	82, 152, 217, 300, 494, 510, 549
BstMBI	GATC	7 cut(s)	79, 149, 214, 297, 491, 507, 546
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 321, 387, 444
BstV1I	GCAGC	1 cut(s)	336
BstX2I	RGATCY	3 cut(s)	79, 149, 491
BstYI	RGATCY	3 cut(s)	79, 149, 491
BsuRI	GGCC	1 cut(s)	390
BtsCI	GGATG	1 cut(s)	513
Cac8I	GCNNGC	4 cut(s)	20, 317, 388, 536
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	85, 207, 459
CviAII	CATG	3 cut(s)	44, 335, 468
CviJI	RGCY	9 cut(s)	197, 232, 275, 293, 303, 340, 386, 390, 444
CviKI_1	RGCY	9 cut(s)	197, 232, 275, 293, 303, 340, 386, 390, 444
CviQI	GTAC	3 cut(s)	85, 207, 459
DdeI	CTNAG	3 cut(s)	218, 270, 462
DpnI	GATC	7 cut(s)	81, 151, 216, 299, 493, 509, 548
DpnII	GATC	7 cut(s)	79, 149, 214, 297, 491, 507, 546
EaeI	YGGCCR	1 cut(s)	388
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EcoRI	GAATTC	2 cut(s)	412, 501
FaeI	CATG	3 cut(s)	47, 338, 471
FaiI	YATR	7 cut(s)	45, 240, 249, 336, 429, 469, 488
FaqI	GGGAC	1 cut(s)	466
FatI	CATG	3 cut(s)	43, 334, 467
Fnu4HI	GCNGC	2 cut(s)	325, 445
FokI	GGATG	1 cut(s)	500
Fsp4HI	GCNGC	2 cut(s)	325, 445
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	2 cut(s)	325, 445
GsaI	CCCAGC	1 cut(s)	297
GsuI	CTGGAG	1 cut(s)	261
HaeII	RGCGCY	1 cut(s)	382
HaeIII	GGCC	1 cut(s)	390
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	3 cut(s)	47, 338, 471
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HinfI	GANTC	1 cut(s)	422
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	6 cut(s)	219, 346, 375, 421, 507, 551
Hpy188III	TCNNGA	3 cut(s)	335, 495, 544
Hpy8I	GTNNAC	1 cut(s)	207
HpyAV	CCTTC	5 cut(s)	49, 237, 399, 428, 469
HpyCH4III	ACNGT	2 cut(s)	89, 211
HpyCH4V	TGCA	3 cut(s)	324, 431, 534
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 321, 387, 444
HpyF3I	CTNAG	3 cut(s)	218, 270, 462
Hsp92II	CATG	3 cut(s)	47, 338, 471
HspAI	GCGC	1 cut(s)	379
Kzo9I	GATC	7 cut(s)	79, 149, 214, 297, 491, 507, 546
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	9 cut(s)	17, 176, 179, 188, 279, 291, 329, 372, 480
Lsp1109I	GCAGC	1 cut(s)	336
MaeI	CTAG	1 cut(s)	456
MaeIII	GTNAC	1 cut(s)	257
MalI	GATC	7 cut(s)	81, 151, 216, 299, 493, 509, 548
MboI	GATC	7 cut(s)	79, 149, 214, 297, 491, 507, 546
MboII	GAAGA	7 cut(s)	17, 77, 106, 109, 169, 421, 510
MflI	RGATCY	3 cut(s)	79, 149, 491
MlsI	TGGCCA	1 cut(s)	390
MluCI	AATT	4 cut(s)	101, 347, 412, 501
MluNI	TGGCCA	1 cut(s)	390
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	353
Mox20I	TGGCCA	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	390
Msp20I	TGGCCA	1 cut(s)	390
MwoI	GCNNNNNNNGC	4 cut(s)	28, 321, 387, 444
NdeII	GATC	7 cut(s)	79, 149, 214, 297, 491, 507, 546
NlaIII	CATG	3 cut(s)	47, 338, 471
NlaIV	GGNNCC	1 cut(s)	276
NmuCI	GTSAC	1 cut(s)	257
PagI	TCATGA	1 cut(s)	334
PflMI	CCANNNNNTGG	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	326, 446
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PspFI	CCCAGC	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	276
PsuI	RGATCY	3 cut(s)	79, 149, 491
RsaI	GTAC	3 cut(s)	86, 208, 460
RsaNI	GTAC	3 cut(s)	85, 207, 459
SatI	GCNGC	2 cut(s)	325, 445
Sau3AI	GATC	7 cut(s)	79, 149, 214, 297, 491, 507, 546
ScaI	AGTACT	1 cut(s)	460
SchI	GAGTC	1 cut(s)	431
SetI	ASST	6 cut(s)	124, 171, 234, 255, 342, 480
SpeI	ACTAGT	1 cut(s)	455
Sse9I	AATT	4 cut(s)	101, 347, 412, 501
SsiI	CCGC	2 cut(s)	364, 445
SspMI	CTAG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	89, 211
TaqI	TCGA	1 cut(s)	527
TasI	AATT	4 cut(s)	101, 347, 412, 501
TatI	WGTACW	3 cut(s)	84, 206, 458
TauI	GCSGC	1 cut(s)	447
TseFI	GTSAC	1 cut(s)	257
TseI	GCWGC	1 cut(s)	324
Tsp45I	GTSAC	1 cut(s)	257
TspDTI	ATGAA	2 cut(s)	323, 411
Van91I	CCANNNNNTGG	1 cut(s)	49
XapI	RAATTY	3 cut(s)	347, 412, 501
XspI	CTAG	1 cut(s)	456
ZrmI	AGTACT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.