Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Forward (+)

20269830 .. 20271736

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g26530.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGCAGAGAGTAAGAGCAAGCAGAGGAAGGAGAACCCCCATGCGGTGGTGAAGAAGGAGGAAGAGGAGGAGGATCATGAGGATCTGGACAATAAGAAGAAGAAACTACAAGTTGTGGGTGGATGTGGAAGTGGATCTGTGAAGAACCAGAACCAGATGATGAGATGTTGTCAGGCTGACAAGTGCACTGCTGATCTGAGTGATGCAAAGCTCTACCATAGAAGGCATAAAGTGTGTGACCAACATTCTAAGGCTCCAGTTGTGCTTGTGTCTGGGATCAGCCAAAGATTTTGCCAACAATGCAGCAGATTTCATGAGCTATCAGAATTCGATGACACCAAGAGGAGTTGTCGCAGGCGCTTGGCTGGCCACAATGAACGCCGAAGGAAGAATTTATCTGAGACATATGCAGGAGGTTCAAGCCGCAAAGGAACTAGTACTGAGTCGTGCAGGAGAGTTGAGGATATGGGATCCGGAAGAATTCAGATCAACATCCAAGAAATGTCGACTCGCAATAAGCATTTCCAAATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

179

Amino Acids

20.45

Weight (kDa)

9.44

Isoelectric Point (pI)

74.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	57 - 130	2.9e-33	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	506
AccIII	TCCGGA	1 cut(s)	473
AciI	CCGC	2 cut(s)	44, 424
AclWI	GGATC	6 cut(s)	81, 90, 142, 284, 465, 478
AcoI	YGGCCR	1 cut(s)	367
AcsI	RAATTY	3 cut(s)	326, 391, 480
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	2 cut(s)	43, 46
AgsI	TTSAA	1 cut(s)	420
AhlI	ACTAGT	1 cut(s)	434
AluBI	AGCT	2 cut(s)	211, 319
AluI	AGCT	2 cut(s)	211, 319
Alw21I	GWGCWC	1 cut(s)	188
Alw26I	GTCTC	1 cut(s)	395
Alw44I	GTGCAC	1 cut(s)	184
AlwI	GGATC	6 cut(s)	81, 90, 142, 284, 465, 478
Aor13HI	TCCGGA	1 cut(s)	473
AoxI	GGCC	1 cut(s)	367
ApaLI	GTGCAC	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	303
ApoI	RAATTY	3 cut(s)	326, 391, 480
AspLEI	GCGC	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	61
BaeGI	GKGCMC	1 cut(s)	188
BalI	TGGCCA	1 cut(s)	369
BamHI	GGATCC	1 cut(s)	470
Bbv12I	GWGCWC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	395
BcuI	ACTAGT	1 cut(s)	434
BfaI	CTAG	1 cut(s)	435
BfoI	RGCGCY	1 cut(s)	361
BisI	GCNGC	2 cut(s)	304, 424
BlsI	GCNGC	2 cut(s)	305, 425
BmcAI	AGTACT	1 cut(s)	439
BmiI	GGNNCC	2 cut(s)	255, 472
BmsI	GCATC	1 cut(s)	193
BpmI	CTGGAG	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	491
BsaWI	WCCGGW	1 cut(s)	473
Bsc4I	CCNNNNNNNGG	2 cut(s)	43, 46
Bse1I	ACTGG	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	491
BseAI	TCCGGA	1 cut(s)	473
BseGI	GGATG	2 cut(s)	128, 492
BseJI	GATNNNNATC	1 cut(s)	491
BseLI	CCNNNNNNNGG	2 cut(s)	43, 46
BseMII	CTCAG	3 cut(s)	188, 390, 432
BseNI	ACTGG	1 cut(s)	257
BseRI	GAGGAG	3 cut(s)	80, 83, 358
BseSI	GKGCMC	1 cut(s)	188
BseXI	GCAGC	1 cut(s)	315
BsgI	GTGCAG	1 cut(s)	469
BshFI	GGCC	1 cut(s)	369
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	474
BslI	CCNNNNNNNGG	2 cut(s)	43, 46
BsmAI	GTCTC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp13I	TCCGGA	1 cut(s)	473
Bsp143I	GATC	7 cut(s)	73, 82, 134, 193, 276, 470, 486
BspACI	CCGC	2 cut(s)	44, 424
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	3 cut(s)	189, 391, 433
BspEI	TCCGGA	1 cut(s)	473
BspHI	TCATGA	2 cut(s)	76, 313
BspLI	GGNNCC	2 cut(s)	255, 472
BspPI	GGATC	6 cut(s)	81, 90, 142, 284, 465, 478
BsrI	ACTGG	1 cut(s)	257
BssMI	GATC	7 cut(s)	73, 82, 134, 193, 276, 470, 486
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	20, 356, 367
BstDEI	CTNAG	4 cut(s)	197, 249, 399, 441
BstF5I	GGATG	2 cut(s)	128, 492
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	7 cut(s)	76, 85, 137, 196, 279, 473, 489
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	7 cut(s)	73, 82, 134, 193, 276, 470, 486
BstMWI	GCNNNNNNNGC	2 cut(s)	300, 366
BstSLI	GKGCMC	1 cut(s)	188
BstV1I	GCAGC	1 cut(s)	315
BstX2I	RGATCY	3 cut(s)	82, 134, 470
BstYI	RGATCY	3 cut(s)	82, 134, 470
BsuRI	GGCC	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	128, 492
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	3 cut(s)	20, 356, 367
CciI	TCATGA	2 cut(s)	76, 313
CfoI	GCGC	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	438
CviAII	CATG	3 cut(s)	41, 77, 314
CviJI	RGCY	8 cut(s)	176, 211, 254, 282, 319, 365, 369, 423
CviKI_1	RGCY	8 cut(s)	176, 211, 254, 282, 319, 365, 369, 423
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	4 cut(s)	197, 249, 399, 441
DpnI	GATC	7 cut(s)	75, 84, 136, 195, 278, 472, 488
DpnII	GATC	7 cut(s)	73, 82, 134, 193, 276, 470, 486
EaeI	YGGCCR	1 cut(s)	367
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
EcoRI	GAATTC	2 cut(s)	326, 480
FaeI	CATG	3 cut(s)	44, 80, 317
FaiI	YATR	8 cut(s)	42, 78, 219, 228, 315, 406, 408, 467
FatI	CATG	3 cut(s)	40, 76, 313
FauNDI	CATATG	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	2 cut(s)	304, 424
FokI	GGATG	2 cut(s)	135, 479
Fsp4HI	GCNGC	2 cut(s)	304, 424
FspBI	CTAG	1 cut(s)	435
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	2 cut(s)	304, 424
GsuI	CTGGAG	1 cut(s)	240
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	1 cut(s)	474
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	3 cut(s)	44, 80, 317
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HincII	GTYRAC	1 cut(s)	507
HindII	GTYRAC	1 cut(s)	507
HinfI	GANTC	2 cut(s)	443, 508
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	2 cut(s)	186, 507
Hpy188I	TCNGA	5 cut(s)	198, 325, 400, 486, 533
Hpy188III	TCNNGA	4 cut(s)	77, 86, 314, 474
Hpy8I	GTNNAC	2 cut(s)	186, 507
HpyAV	CCTTC	4 cut(s)	22, 49, 216, 378
HpyCH4V	TGCA	5 cut(s)	186, 206, 303, 410, 450
HpyF10VI	GCNNNNNNNGC	2 cut(s)	300, 366
HpyF3I	CTNAG	4 cut(s)	197, 249, 399, 441
Hsp92II	CATG	3 cut(s)	44, 80, 317
HspAI	GCGC	1 cut(s)	358
Kpn2I	TCCGGA	1 cut(s)	473
Kzo9I	GATC	7 cut(s)	73, 82, 134, 193, 276, 470, 486
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	1 cut(s)	315
LweI	GCATC	1 cut(s)	193
MaeI	CTAG	1 cut(s)	435
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	7 cut(s)	75, 84, 136, 195, 278, 472, 488
MboI	GATC	7 cut(s)	73, 82, 134, 193, 276, 470, 486
MboII	GAAGA	7 cut(s)	64, 74, 109, 112, 154, 400, 489
MflI	RGATCY	3 cut(s)	82, 134, 470
MhlI	GDGCHC	1 cut(s)	188
MlsI	TGGCCA	1 cut(s)	369
MluCI	AATT	3 cut(s)	326, 391, 480
MluNI	TGGCCA	1 cut(s)	369
MlyI	GAGTC	2 cut(s)	452, 502
MnlI	CCTC	9 cut(s)	18, 52, 58, 61, 64, 73, 336, 407, 454
Mox20I	TGGCCA	1 cut(s)	369
MroI	TCCGGA	1 cut(s)	473
MscI	TGGCCA	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	369
MspI	CCGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	2 cut(s)	300, 366
NdeI	CATATG	1 cut(s)	406
NdeII	GATC	7 cut(s)	73, 82, 134, 193, 276, 470, 486
NlaIII	CATG	3 cut(s)	44, 80, 317
NlaIV	GGNNCC	2 cut(s)	255, 472
NmuCI	GTSAC	1 cut(s)	236
PagI	TCATGA	2 cut(s)	76, 313
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	305, 425
PleI	GAGTC	2 cut(s)	451, 502
PpsI	GAGTC	2 cut(s)	451, 502
PspN4I	GGNNCC	2 cut(s)	255, 472
PsuI	RGATCY	3 cut(s)	82, 134, 470
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
SalI	GTCGAC	1 cut(s)	505
SatI	GCNGC	2 cut(s)	304, 424
Sau3AI	GATC	7 cut(s)	73, 82, 134, 193, 276, 470, 486
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	2 cut(s)	452, 502
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	3 cut(s)	213, 321, 418
SfaNI	GCATC	1 cut(s)	193
SpeI	ACTAGT	1 cut(s)	434
Sse9I	AATT	3 cut(s)	326, 391, 480
SsiI	CCGC	2 cut(s)	44, 424
SspMI	CTAG	1 cut(s)	435
TaqI	TCGA	2 cut(s)	330, 506
TasI	AATT	3 cut(s)	326, 391, 480
TatI	WGTACW	1 cut(s)	437
TauI	GCSGC	1 cut(s)	426
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	1 cut(s)	303
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	302, 390
TspRI	CASTG	1 cut(s)	193
Van91I	CCANNNNNTGG	1 cut(s)	46
VneI	GTGCAC	1 cut(s)	184
XapI	RAATTY	3 cut(s)	326, 391, 480
XmiI	GTMKAC	1 cut(s)	506
XspI	CTAG	1 cut(s)	435
ZrmI	AGTACT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.