Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Reverse (-)

43844140 .. 43845857

Gene Structure 1718 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGGAAGAGAGTAAAAGCAAGCAGAGGAAGCAGGAGAACCACCATGTGGTGGTGAAGAAGGAGGAGGAGGAGGAGGAGGATCTGTACAGTAAGAAGAAGAAATTACAACTTGTGGGTGGAAGTGGAAGTGGATCTGTGAAGAACCAGAACCAGAACCTGAACCAGATGATGAGATGTTGTCAGGCTGACAACTGTACAGTTGATCTGAGTGATGCAAAGCTCTACCATAGAAGGCATAAGGTGTGTGACCATCATTCTAAGGCTCCAGTTGTGCTTTTGGCTGGGATCAGCCAAAGATTTTGCCAGCAATGCAGCAGATTTCATGAGCTAGCAGAATTTGATGACACCAAGCGGAGTTGTCGGAGGCGCTTGGCTGGCCACAATGAACGGCGAAGGAAGAATTCCTCCGAGTCTAATGCAGAAGGCTCAAGCCGCAAAGGGACTAGTACTCAGTCGTGTGGGAAGGTTGATGATATGGGATCCGGAAGAATTCAGATCAACATCCAAGAAAACTCGACTTGCAAGCATTTCCAGATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

180

Amino Acids

20.61

Weight (kDa)

9.27

Isoelectric Point (pI)

65.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	60 - 133	5.1e-33	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	46, 49
AccIII	TCCGGA	1 cut(s)	482
AciI	CCGC	2 cut(s)	352, 433
AclWI	GGATC	5 cut(s)	87, 139, 293, 474, 487
AcoI	YGGCCR	1 cut(s)	376
AcsI	RAATTY	3 cut(s)	335, 400, 489
AdeI	CACNNNGTG	1 cut(s)	46
AfaI	GTAC	3 cut(s)	86, 196, 448
AfiI	CCNNNNNNNGG	2 cut(s)	46, 49
AhlI	ACTAGT	1 cut(s)	443
AluBI	AGCT	2 cut(s)	220, 328
AluI	AGCT	2 cut(s)	220, 328
AlwI	GGATC	5 cut(s)	87, 139, 293, 474, 487
AlwNI	CAGNNNCTG	1 cut(s)	157
Aor13HI	TCCGGA	1 cut(s)	482
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	1 cut(s)	312
ApoI	RAATTY	3 cut(s)	335, 400, 489
AspLEI	GCGC	1 cut(s)	369
AsuHPI	GGTGA	1 cut(s)	64
AsuNHI	GCTAGC	1 cut(s)	328
BalI	TGGCCA	1 cut(s)	378
BamHI	GGATCC	1 cut(s)	479
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	1 cut(s)	404
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	2 cut(s)	329, 444
BfoI	RGCGCY	1 cut(s)	370
BisI	GCNGC	2 cut(s)	313, 433
BlsI	GCNGC	2 cut(s)	314, 434
BmcAI	AGTACT	1 cut(s)	448
BmiI	GGNNCC	2 cut(s)	264, 481
BmsI	GCATC	1 cut(s)	202
BmtI	GCTAGC	1 cut(s)	332
BpmI	CTGGAG	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	500
BsaWI	WCCGGW	1 cut(s)	482
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 49
Bse1I	ACTGG	1 cut(s)	266
Bse3DI	GCAATG	1 cut(s)	314
Bse8I	GATNNNNATC	1 cut(s)	500
BseAI	TCCGGA	1 cut(s)	482
BseGI	GGATG	1 cut(s)	501
BseJI	GATNNNNATC	1 cut(s)	500
BseLI	CCNNNNNNNGG	2 cut(s)	46, 49
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	2 cut(s)	197, 464
BseNI	ACTGG	1 cut(s)	266
BseRI	GAGGAG	5 cut(s)	77, 80, 83, 86, 89
BseXI	GCAGC	1 cut(s)	324
BseYI	CCCAGC	1 cut(s)	281
BshFI	GGCC	1 cut(s)	378
BsiSI	CCGG	1 cut(s)	483
BslFI	GGGAC	1 cut(s)	454
BslI	CCNNNNNNNGG	2 cut(s)	46, 49
BsmFI	GGGAC	1 cut(s)	454
BsnI	GGCC	1 cut(s)	378
Bsp13I	TCCGGA	1 cut(s)	482
Bsp1407I	TGTACA	2 cut(s)	84, 194
Bsp143I	GATC	7 cut(s)	79, 131, 202, 285, 479, 495, 534
BspACI	CCGC	2 cut(s)	352, 433
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	2 cut(s)	198, 463
BspEI	TCCGGA	1 cut(s)	482
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	264, 481
BspOI	GCTAGC	1 cut(s)	332
BspPI	GGATC	5 cut(s)	87, 139, 293, 474, 487
BsrDI	GCAATG	1 cut(s)	314
BsrGI	TGTACA	2 cut(s)	84, 194
BsrI	ACTGG	1 cut(s)	266
BssMI	GATC	7 cut(s)	79, 131, 202, 285, 479, 495, 534
Bst4CI	ACNGT	3 cut(s)	89, 194, 199
BstAUI	TGTACA	2 cut(s)	84, 194
BstC8I	GCNNGC	5 cut(s)	20, 305, 330, 376, 524
BstDEI	CTNAG	3 cut(s)	206, 258, 450
BstF5I	GGATG	1 cut(s)	501
BstH2I	RGCGCY	1 cut(s)	370
BstHHI	GCGC	1 cut(s)	369
BstKTI	GATC	7 cut(s)	82, 134, 205, 288, 482, 498, 537
BstMBI	GATC	7 cut(s)	79, 131, 202, 285, 479, 495, 534
BstMWI	GCNNNNNNNGC	4 cut(s)	28, 309, 375, 432
BstV1I	GCAGC	1 cut(s)	324
BstX2I	RGATCY	3 cut(s)	79, 131, 479
BstYI	RGATCY	3 cut(s)	79, 131, 479
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	501
Cac8I	GCNNGC	5 cut(s)	20, 305, 330, 376, 524
CaiI	CAGNNNCTG	1 cut(s)	157
CciI	TCATGA	1 cut(s)	322
CfoI	GCGC	1 cut(s)	369
Csp6I	GTAC	3 cut(s)	85, 195, 447
CviAII	CATG	2 cut(s)	44, 323
CviQI	GTAC	3 cut(s)	85, 195, 447
DdeI	CTNAG	3 cut(s)	206, 258, 450
DpnI	GATC	7 cut(s)	81, 133, 204, 287, 481, 497, 536
DpnII	GATC	7 cut(s)	79, 131, 202, 285, 479, 495, 534
DraIII	CACNNNGTG	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	376
EcoRI	GAATTC	2 cut(s)	400, 489
FaeI	CATG	2 cut(s)	47, 326
FaiI	YATR	5 cut(s)	45, 228, 237, 324, 476
FaqI	GGGAC	1 cut(s)	454
FatI	CATG	2 cut(s)	43, 322
Fnu4HI	GCNGC	2 cut(s)	313, 433
FokI	GGATG	1 cut(s)	488
Fsp4HI	GCNGC	2 cut(s)	313, 433
FspBI	CTAG	2 cut(s)	329, 444
GlaI	GCGC	1 cut(s)	368
GluI	GCNGC	2 cut(s)	313, 433
GsaI	CCCAGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	249
HaeII	RGCGCY	1 cut(s)	370
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	1 cut(s)	483
HhaI	GCGC	1 cut(s)	369
Hin1II	CATG	2 cut(s)	47, 326
Hin6I	GCGC	1 cut(s)	367
HinP1I	GCGC	1 cut(s)	367
HinfI	GANTC	1 cut(s)	410
HpaII	CCGG	1 cut(s)	483
HphI	GGTGA	1 cut(s)	64
Hpy188I	TCNGA	5 cut(s)	207, 363, 409, 495, 539
Hpy188III	TCNNGA	3 cut(s)	323, 483, 532
HpyAV	CCTTC	5 cut(s)	52, 225, 387, 416, 457
HpyCH4III	ACNGT	3 cut(s)	89, 194, 199
HpyCH4V	TGCA	4 cut(s)	215, 312, 419, 522
HpyF10VI	GCNNNNNNNGC	4 cut(s)	28, 309, 375, 432
HpyF3I	CTNAG	3 cut(s)	206, 258, 450
Hsp92II	CATG	2 cut(s)	47, 326
HspAI	GCGC	1 cut(s)	367
Kpn2I	TCCGGA	1 cut(s)	482
Kzo9I	GATC	7 cut(s)	79, 131, 202, 285, 479, 495, 534
LmnI	GCTCC	1 cut(s)	268
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	329, 444
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	7 cut(s)	81, 133, 204, 287, 481, 497, 536
MboI	GATC	7 cut(s)	79, 131, 202, 285, 479, 495, 534
MboII	GAAGA	7 cut(s)	17, 67, 106, 109, 151, 409, 498
MflI	RGATCY	3 cut(s)	79, 131, 479
MlsI	TGGCCA	1 cut(s)	378
MluCI	AATT	4 cut(s)	101, 335, 400, 489
MluNI	TGGCCA	1 cut(s)	378
MlyI	GAGTC	1 cut(s)	419
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	9 cut(s)	18, 55, 58, 61, 64, 67, 70, 357, 415
Mox20I	TGGCCA	1 cut(s)	378
MroI	TCCGGA	1 cut(s)	482
MscI	TGGCCA	1 cut(s)	378
Msp20I	TGGCCA	1 cut(s)	378
MspI	CCGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	4 cut(s)	28, 309, 375, 432
NdeII	GATC	7 cut(s)	79, 131, 202, 285, 479, 495, 534
NheI	GCTAGC	1 cut(s)	328
NlaIII	CATG	2 cut(s)	47, 326
NlaIV	GGNNCC	2 cut(s)	264, 481
NmuCI	GTSAC	1 cut(s)	245
PagI	TCATGA	1 cut(s)	322
PflMI	CCANNNNNTGG	2 cut(s)	46, 49
PkrI	GCNGC	2 cut(s)	314, 434
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PspFI	CCCAGC	1 cut(s)	281
PspN4I	GGNNCC	2 cut(s)	264, 481
PstNI	CAGNNNCTG	1 cut(s)	157
PsuI	RGATCY	3 cut(s)	79, 131, 479
RsaI	GTAC	3 cut(s)	86, 196, 448
RsaNI	GTAC	3 cut(s)	85, 195, 447
SatI	GCNGC	2 cut(s)	313, 433
Sau3AI	GATC	7 cut(s)	79, 131, 202, 285, 479, 495, 534
ScaI	AGTACT	1 cut(s)	448
SchI	GAGTC	1 cut(s)	419
SetI	ASST	5 cut(s)	159, 222, 243, 330, 468
SfaNI	GCATC	1 cut(s)	202
SmlI	CTYRAG	1 cut(s)	427
SmoI	CTYRAG	1 cut(s)	427
SpeI	ACTAGT	1 cut(s)	443
Sse9I	AATT	4 cut(s)	101, 335, 400, 489
SsiI	CCGC	2 cut(s)	352, 433
SspMI	CTAG	2 cut(s)	329, 444
TaaI	ACNGT	3 cut(s)	89, 194, 199
TaqI	TCGA	1 cut(s)	515
TasI	AATT	4 cut(s)	101, 335, 400, 489
TatI	WGTACW	3 cut(s)	84, 194, 446
TauI	GCSGC	1 cut(s)	435
TseFI	GTSAC	1 cut(s)	245
TseI	GCWGC	1 cut(s)	312
Tsp45I	GTSAC	1 cut(s)	245
TspDTI	ATGAA	2 cut(s)	311, 399
Van91I	CCANNNNNTGG	2 cut(s)	46, 49
XapI	RAATTY	3 cut(s)	335, 400, 489
XspI	CTAG	2 cut(s)	329, 444
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.