Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Forward (+)

49249876 .. 49251271

Gene Structure 1396 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG351900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGAGCAGATTGCTGTGGTCCTCACTACTCTTGCCTCGTTACTCTCACTTTTTAATCTTCTCTCCTTCCCTTCTCCCAATACAAAACAACACATCACTAACAAACCCATTGATATCCTTCTTCCTCTTCCTGATCTTGATAGCTACAGACTACCTCATTTTCTCTCGTCTCCCTTGCTACTCTTTCTAATCATGGAAGAGAGTAAAAGCAAGCAGAGGAAGCAGGAGAACCCCCATGTGGTGGTGAAGAAGGAGGAGGAGGAGGAGGAGGAGGTTCTGTACAGTAAGAAGAAGAAATTACAAGTTGTGGGTGGAAGTGGAAGTGGATCTGTGAAGAACCAGAACCAGAACCTGAACCGGATGATGAGATGTTGTCAGGCTGACAAGTGTACAGCTGATCTGAGTGATGCAAAGCTCTACCATAGAAGGCATAAGGTGTGTGACCATCATTCTAAGGCTCCAGTTGTGCTTTTGGCTGGGATCAGCCAAAGATTTTGCCAGCAATGCAGCAGATTCCACGAGCTATCAGAATTTGATGACACCAAGAGGAGTTGTCGGAGGCGCTTGGCTGGCCACAATGAACGGCGAAGGAAGAATTCCTCCGAGTCTTATGCAGAAGGCTCAAGCCGCAAAGGGACTAGTACTCAGTCGTGTGGGAAGGTTGATGATATGGGATCCGGAAGAATTCAGATCAACATCCAAGAAAACTCGACTTGCAAGCATTTCCAGATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

245

Amino Acids

27.91

Weight (kDa)

9.29

Isoelectric Point (pI)

64.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	125 - 198	1.2e-32	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	241
AccIII	TCCGGA	1 cut(s)	677
AciI	CCGC	1 cut(s)	628
AclWI	GGATC	4 cut(s)	334, 488, 669, 682
AcoI	YGGCCR	1 cut(s)	571
AcsI	RAATTY	3 cut(s)	530, 595, 684
AfaI	GTAC	3 cut(s)	281, 391, 643
AfiI	CCNNNNNNNGG	2 cut(s)	238, 241
AhlI	ACTAGT	1 cut(s)	638
AluBI	AGCT	4 cut(s)	144, 395, 415, 523
AluI	AGCT	4 cut(s)	144, 395, 415, 523
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	4 cut(s)	334, 488, 669, 682
AlwNI	CAGNNNCTG	1 cut(s)	352
Aor13HI	TCCGGA	1 cut(s)	677
AoxI	GGCC	1 cut(s)	571
ApeKI	GCWGC	1 cut(s)	507
ApoI	RAATTY	3 cut(s)	530, 595, 684
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	19
BalI	TGGCCA	1 cut(s)	573
BamHI	GGATCC	1 cut(s)	674
BauI	CACGAG	1 cut(s)	518
BbvI	GCAGC	1 cut(s)	519
BccI	CCATC	1 cut(s)	453
BceAI	ACGGC	1 cut(s)	599
BcgI	CGANNNNNNTGC	2 cut(s)	593, 627
BcoDI	GTCTC	1 cut(s)	174
BcuI	ACTAGT	1 cut(s)	638
BfaI	CTAG	1 cut(s)	639
BfmI	CTRYAG	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	565
BisI	GCNGC	2 cut(s)	508, 628
BlsI	GCNGC	2 cut(s)	509, 629
BmcAI	AGTACT	1 cut(s)	643
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	2 cut(s)	459, 676
BmsI	GCATC	1 cut(s)	397
BpmI	CTGGAG	1 cut(s)	444
BpuEI	CTTGAG	1 cut(s)	607
BsaBI	GATNNNNATC	1 cut(s)	695
BsaWI	WCCGGW	2 cut(s)	357, 677
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 241
Bse1I	ACTGG	1 cut(s)	461
Bse3DI	GCAATG	1 cut(s)	509
Bse8I	GATNNNNATC	1 cut(s)	695
BseAI	TCCGGA	1 cut(s)	677
BseGI	GGATG	2 cut(s)	366, 696
BseJI	GATNNNNATC	1 cut(s)	695
BseLI	CCNNNNNNNGG	2 cut(s)	238, 241
BseMI	GCAATG	1 cut(s)	509
BseMII	CTCAG	2 cut(s)	392, 659
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	7 cut(s)	269, 272, 275, 278, 281, 284, 562
BseXI	GCAGC	1 cut(s)	519
BseYI	CCCAGC	1 cut(s)	476
BshFI	GGCC	1 cut(s)	573
BsiSI	CCGG	2 cut(s)	358, 678
BslFI	GGGAC	1 cut(s)	649
BslI	CCNNNNNNNGG	2 cut(s)	238, 241
BsmAI	GTCTC	1 cut(s)	174
BsmBI	CGTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	649
BsnI	GGCC	1 cut(s)	573
Bsp13I	TCCGGA	1 cut(s)	677
Bsp1407I	TGTACA	2 cut(s)	279, 389
Bsp143I	GATC	7 cut(s)	133, 326, 397, 480, 674, 690, 729
BspACI	CCGC	1 cut(s)	628
BspANI	GGCC	1 cut(s)	573
BspCNI	CTCAG	2 cut(s)	393, 658
BspEI	TCCGGA	1 cut(s)	677
BspLI	GGNNCC	2 cut(s)	459, 676
BspPI	GGATC	4 cut(s)	334, 488, 669, 682
BsrDI	GCAATG	1 cut(s)	509
BsrGI	TGTACA	2 cut(s)	279, 389
BsrI	ACTGG	1 cut(s)	461
BssMI	GATC	7 cut(s)	133, 326, 397, 480, 674, 690, 729
BssSI	CACGAG	1 cut(s)	518
Bst2BI	CACGAG	1 cut(s)	518
Bst4CI	ACNGT	1 cut(s)	284
Bst6I	CTCTTC	2 cut(s)	132, 192
BstAUI	TGTACA	2 cut(s)	279, 389
BstC8I	GCNNGC	4 cut(s)	212, 500, 571, 719
BstDEI	CTNAG	3 cut(s)	401, 453, 645
BstF5I	GGATG	2 cut(s)	366, 696
BstH2I	RGCGCY	1 cut(s)	565
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	7 cut(s)	136, 329, 400, 483, 677, 693, 732
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	7 cut(s)	133, 326, 397, 480, 674, 690, 729
BstMWI	GCNNNNNNNGC	4 cut(s)	220, 504, 570, 627
BstSFI	CTRYAG	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	519
BstX2I	RGATCY	2 cut(s)	326, 674
BstYI	RGATCY	2 cut(s)	326, 674
BsuRI	GGCC	1 cut(s)	573
BtsCI	GGATG	2 cut(s)	366, 696
Cac8I	GCNNGC	4 cut(s)	212, 500, 571, 719
CaiI	CAGNNNCTG	1 cut(s)	352
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	1 cut(s)	19
Csp6I	GTAC	3 cut(s)	280, 390, 642
CviAII	CATG	2 cut(s)	193, 236
CviQI	GTAC	3 cut(s)	280, 390, 642
DdeI	CTNAG	3 cut(s)	401, 453, 645
DpnI	GATC	7 cut(s)	135, 328, 399, 482, 676, 692, 731
DpnII	GATC	7 cut(s)	133, 326, 397, 480, 674, 690, 729
EaeI	YGGCCR	1 cut(s)	571
Eam1104I	CTCTTC	2 cut(s)	132, 192
EarI	CTCTTC	2 cut(s)	132, 192
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	19
EcoRI	GAATTC	2 cut(s)	595, 684
EcoRV	GATATC	1 cut(s)	115
Esp3I	CGTCTC	1 cut(s)	174
FaeI	CATG	2 cut(s)	196, 239
FaiI	YATR	6 cut(s)	194, 237, 423, 432, 612, 671
FaqI	GGGAC	1 cut(s)	649
FatI	CATG	2 cut(s)	192, 235
Fnu4HI	GCNGC	2 cut(s)	508, 628
FokI	GGATG	2 cut(s)	373, 683
Fsp4HI	GCNGC	2 cut(s)	508, 628
FspBI	CTAG	1 cut(s)	639
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	2 cut(s)	508, 628
GsaI	CCCAGC	1 cut(s)	480
GsuI	CTGGAG	1 cut(s)	444
HaeII	RGCGCY	1 cut(s)	565
HaeIII	GGCC	1 cut(s)	573
HapII	CCGG	2 cut(s)	358, 678
HhaI	GCGC	1 cut(s)	564
Hin1II	CATG	2 cut(s)	196, 239
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HinfI	GANTC	2 cut(s)	513, 605
HpaII	CCGG	2 cut(s)	358, 678
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	6 cut(s)	402, 529, 558, 604, 690, 734
Hpy188III	TCNNGA	4 cut(s)	131, 137, 678, 727
Hpy8I	GTNNAC	1 cut(s)	390
HpyAV	CCTTC	8 cut(s)	76, 81, 128, 244, 420, 582, 611, 652
HpyCH4III	ACNGT	1 cut(s)	284
HpyCH4V	TGCA	4 cut(s)	410, 507, 614, 717
HpyF10VI	GCNNNNNNNGC	4 cut(s)	220, 504, 570, 627
HpyF3I	CTNAG	3 cut(s)	401, 453, 645
Hsp92II	CATG	2 cut(s)	196, 239
HspAI	GCGC	1 cut(s)	562
Kpn2I	TCCGGA	1 cut(s)	677
Kzo9I	GATC	7 cut(s)	133, 326, 397, 480, 674, 690, 729
LmnI	GCTCC	2 cut(s)	4, 463
Lsp1109I	GCAGC	1 cut(s)	519
LweI	GCATC	1 cut(s)	397
MaeI	CTAG	1 cut(s)	639
MaeIII	GTNAC	2 cut(s)	39, 440
MalI	GATC	7 cut(s)	135, 328, 399, 482, 676, 692, 731
MboI	GATC	7 cut(s)	133, 326, 397, 480, 674, 690, 729
MflI	RGATCY	2 cut(s)	326, 674
MlsI	TGGCCA	1 cut(s)	573
MluCI	AATT	4 cut(s)	296, 530, 595, 684
MluNI	TGGCCA	1 cut(s)	573
MlyI	GAGTC	1 cut(s)	614
MmeI	TCCRAC	1 cut(s)	536
Mox20I	TGGCCA	1 cut(s)	573
MroI	TCCGGA	1 cut(s)	677
MscI	TGGCCA	1 cut(s)	573
MseI	TTAA	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	395
MspI	CCGG	2 cut(s)	358, 678
MwoI	GCNNNNNNNGC	4 cut(s)	220, 504, 570, 627
NdeII	GATC	7 cut(s)	133, 326, 397, 480, 674, 690, 729
NlaIII	CATG	2 cut(s)	196, 239
NlaIV	GGNNCC	2 cut(s)	459, 676
NmuCI	GTSAC	1 cut(s)	440
PfeI	GAWTC	1 cut(s)	513
PflMI	CCANNNNNTGG	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	509, 629
PleI	GAGTC	1 cut(s)	613
PpsI	GAGTC	1 cut(s)	613
PspFI	CCCAGC	1 cut(s)	476
PspN4I	GGNNCC	2 cut(s)	459, 676
PspPI	GGNCC	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	352
PsuI	RGATCY	2 cut(s)	326, 674
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	3 cut(s)	281, 391, 643
RsaNI	GTAC	3 cut(s)	280, 390, 642
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	508, 628
Sau3AI	GATC	7 cut(s)	133, 326, 397, 480, 674, 690, 729
Sau96I	GGNCC	1 cut(s)	19
ScaI	AGTACT	1 cut(s)	643
SchI	GAGTC	1 cut(s)	614
SetI	ASST	9 cut(s)	146, 157, 276, 354, 397, 417, 438, 525, 663
SfaNI	GCATC	1 cut(s)	397
SfcI	CTRYAG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
SpeI	ACTAGT	1 cut(s)	638
Sse9I	AATT	4 cut(s)	296, 530, 595, 684
SsiI	CCGC	1 cut(s)	628
SspMI	CTAG	1 cut(s)	639
TaaI	ACNGT	1 cut(s)	284
TaqI	TCGA	1 cut(s)	710
TasI	AATT	4 cut(s)	296, 530, 595, 684
TatI	WGTACW	3 cut(s)	279, 389, 641
TauI	GCSGC	1 cut(s)	630
TfiI	GAWTC	1 cut(s)	513
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	440
TseI	GCWGC	1 cut(s)	507
Tsp45I	GTSAC	1 cut(s)	440
TspDTI	ATGAA	1 cut(s)	594
Van91I	CCANNNNNTGG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	3 cut(s)	530, 595, 684
XspI	CTAG	1 cut(s)	639
ZrmI	AGTACT	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.