Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Forward (+)

46656769 .. 46658226

Gene Structure 1458 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG324400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGAGGCTATCATGCATTATTGTACGACAAACTGTCAAACAAGAGCCAAGAGCCCAAGGCAAAAGAAACAACTCAGGAAAAGAATTATGGAGCAGATTGCTGTGGTCCTCACTACTCTTGCCTCATTACTCTCACTTTTTAATCTTCTCTCCTTCCCTTCCCCCAAGACAAAACACCACATCACTAACAAACCCATTGATATCCTTCTTCCTCTTCCTGGTCTTGATAGCTACAGACTACCTCATTCTCTCGTCTCCCTTGCTACTCTTTCTAATCATGGAAGAGAGTAAAAGCAAGCAGAGGAAGCAGGAGAACCCCCATGTGGTGGTGAAGAAGGAGGAGGAGGAGGAGGTTCTGTACAGTAAGAAGAAGAAATTACAAGTTGTGGGTGGAAGTGGAAGTGGAAGTGGATCTGTGAAGAACCAGAACCTGAACCAGATGATGAGATGTTGTCAGGCTGACAAGTGTACAGCTGATCTGAGTGATGCAAAGCTCTACCATAGAAGGCATAAGGTGTGTGACCATCATTCTAAGGCTCCAGTTGTGCTTTTGGCTGGGATCAGCCAAAGATTTTGCCAGCAATGCAGCAGATTTCACGAGCTATCAGAATTTGATGACACCAAGCGGAGTTGTCGGAGGCGCTTGGCTGGCCACAATGAACGGCGAAGGAAGAATTCCTCCGAGTCTTATGCAGAAGGCTCAAGCCGCAAAGGGACTAGTACTCAGTCGTGTGGGAAGGTTGATGATATGGGATCCGGAAGAATTCAGATCAACATCCAAGAAAACTCGACTTGCAAGCATTTCCAGATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

271

Amino Acids

30.95

Weight (kDa)

9.73

Isoelectric Point (pI)

62.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	151 - 224	1.4e-32	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	325
AccIII	TCCGGA	1 cut(s)	755
AciI	CCGC	2 cut(s)	625, 706
AclWI	GGATC	4 cut(s)	418, 566, 747, 760
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	3 cut(s)	608, 673, 762
AfaI	GTAC	4 cut(s)	24, 359, 469, 721
AfiI	CCNNNNNNNGG	3 cut(s)	217, 322, 325
AhdI	GACNNNNNGTC	1 cut(s)	32
AhlI	ACTAGT	1 cut(s)	716
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	4 cut(s)	230, 473, 493, 601
AluI	AGCT	4 cut(s)	230, 473, 493, 601
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	4 cut(s)	418, 566, 747, 760
AlwNI	CAGNNNCTG	1 cut(s)	430
Aor13HI	TCCGGA	1 cut(s)	755
AoxI	GGCC	1 cut(s)	649
ApeKI	GCWGC	1 cut(s)	585
ApoI	RAATTY	3 cut(s)	608, 673, 762
AspLEI	GCGC	1 cut(s)	642
AspS9I	GGNCC	1 cut(s)	105
AsuHPI	GGTGA	1 cut(s)	340
AvaII	GGWCC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	651
BamHI	GGATCC	1 cut(s)	752
BanII	GRGCYC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	596
BbvI	GCAGC	1 cut(s)	597
BccI	CCATC	1 cut(s)	531
BceAI	ACGGC	1 cut(s)	677
BcgI	CGANNNNNNTGC	2 cut(s)	671, 705
BciT130I	CCWGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	258
BcuI	ACTAGT	1 cut(s)	716
BfaI	CTAG	1 cut(s)	717
BfmI	CTRYAG	1 cut(s)	231
BfoI	RGCGCY	1 cut(s)	643
BisI	GCNGC	2 cut(s)	586, 706
BlsI	GCNGC	2 cut(s)	587, 707
BmcAI	AGTACT	1 cut(s)	721
Bme1390I	CCNGG	1 cut(s)	218
Bme18I	GGWCC	1 cut(s)	105
BmeRI	GACNNNNNGTC	1 cut(s)	32
BmgT120I	GGNCC	1 cut(s)	105
BmiI	GGNNCC	2 cut(s)	537, 754
BmrFI	CCNGG	1 cut(s)	218
BmsI	GCATC	1 cut(s)	475
BpmI	CTGGAG	1 cut(s)	522
BpuEI	CTTGAG	1 cut(s)	685
BsaBI	GATNNNNATC	1 cut(s)	773
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	755
BsaXI	ACNNNNNCTCC	2 cut(s)	341, 371
Bsc4I	CCNNNNNNNGG	3 cut(s)	217, 322, 325
Bse1I	ACTGG	1 cut(s)	539
Bse3DI	GCAATG	1 cut(s)	587
Bse8I	GATNNNNATC	1 cut(s)	773
BseAI	TCCGGA	1 cut(s)	755
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	1 cut(s)	774
BseJI	GATNNNNATC	1 cut(s)	773
BseLI	CCNNNNNNNGG	3 cut(s)	217, 322, 325
BseMI	GCAATG	1 cut(s)	587
BseMII	CTCAG	3 cut(s)	87, 470, 737
BseNI	ACTGG	1 cut(s)	539
BseRI	GAGGAG	4 cut(s)	353, 356, 359, 362
BseXI	GCAGC	1 cut(s)	597
BseYI	CCCAGC	1 cut(s)	554
BshFI	GGCC	1 cut(s)	651
BsiSI	CCGG	1 cut(s)	756
BslFI	GGGAC	1 cut(s)	727
BslI	CCNNNNNNNGG	3 cut(s)	217, 322, 325
BsmAI	GTCTC	1 cut(s)	258
BsmBI	CGTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	727
BsnI	GGCC	1 cut(s)	651
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp13I	TCCGGA	1 cut(s)	755
Bsp1407I	TGTACA	2 cut(s)	357, 467
Bsp143I	GATC	6 cut(s)	410, 475, 558, 752, 768, 807
BspACI	CCGC	2 cut(s)	625, 706
BspANI	GGCC	1 cut(s)	651
BspCNI	CTCAG	3 cut(s)	86, 471, 736
BspEI	TCCGGA	1 cut(s)	755
BspLI	GGNNCC	2 cut(s)	537, 754
BspPI	GGATC	4 cut(s)	418, 566, 747, 760
BsrDI	GCAATG	1 cut(s)	587
BsrGI	TGTACA	2 cut(s)	357, 467
BsrI	ACTGG	1 cut(s)	539
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	6 cut(s)	410, 475, 558, 752, 768, 807
BssSI	CACGAG	1 cut(s)	596
BssT1I	CCWWGG	1 cut(s)	55
Bst2BI	CACGAG	1 cut(s)	596
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	2 cut(s)	34, 362
Bst6I	CTCTTC	2 cut(s)	218, 276
BstAUI	TGTACA	2 cut(s)	357, 467
BstC8I	GCNNGC	4 cut(s)	296, 578, 649, 797
BstDEI	CTNAG	4 cut(s)	73, 479, 531, 723
BstF5I	GGATG	1 cut(s)	774
BstH2I	RGCGCY	1 cut(s)	643
BstHHI	GCGC	1 cut(s)	642
BstKTI	GATC	6 cut(s)	413, 478, 561, 755, 771, 810
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	6 cut(s)	410, 475, 558, 752, 768, 807
BstMWI	GCNNNNNNNGC	4 cut(s)	304, 582, 648, 705
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	597
BstX2I	RGATCY	2 cut(s)	410, 752
BstYI	RGATCY	2 cut(s)	410, 752
BsuRI	GGCC	1 cut(s)	651
BtsCI	GGATG	1 cut(s)	774
Cac8I	GCNNGC	4 cut(s)	296, 578, 649, 797
CaiI	CAGNNNCTG	1 cut(s)	430
CfoI	GCGC	1 cut(s)	642
Cfr13I	GGNCC	1 cut(s)	105
Csp6I	GTAC	4 cut(s)	23, 358, 468, 720
CviAII	CATG	3 cut(s)	12, 277, 320
CviQI	GTAC	4 cut(s)	23, 358, 468, 720
DdeI	CTNAG	4 cut(s)	73, 479, 531, 723
DpnI	GATC	6 cut(s)	412, 477, 560, 754, 770, 809
DpnII	GATC	6 cut(s)	410, 475, 558, 752, 768, 807
DriI	GACNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	649
Eam1104I	CTCTTC	2 cut(s)	218, 276
Eam1105I	GACNNNNNGTC	1 cut(s)	32
EarI	CTCTTC	2 cut(s)	218, 276
Eco130I	CCWWGG	1 cut(s)	55
Eco24I	GRGCYC	1 cut(s)	55
Eco32I	GATATC	1 cut(s)	201
Eco47I	GGWCC	1 cut(s)	105
EcoRI	GAATTC	2 cut(s)	673, 762
EcoRII	CCWGG	1 cut(s)	216
EcoRV	GATATC	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	55
EcoT22I	ATGCAT	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	1 cut(s)	55
Esp3I	CGTCTC	1 cut(s)	258
FaeI	CATG	3 cut(s)	15, 280, 323
FaiI	YATR	8 cut(s)	13, 88, 278, 321, 501, 510, 690, 749
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	3 cut(s)	11, 276, 319
Fnu4HI	GCNGC	2 cut(s)	586, 706
FokI	GGATG	1 cut(s)	761
FriOI	GRGCYC	1 cut(s)	55
Fsp4HI	GCNGC	2 cut(s)	586, 706
FspBI	CTAG	1 cut(s)	717
GlaI	GCGC	1 cut(s)	641
GluI	GCNGC	2 cut(s)	586, 706
GsaI	CCCAGC	1 cut(s)	558
GsuI	CTGGAG	1 cut(s)	522
HaeII	RGCGCY	1 cut(s)	643
HaeIII	GGCC	1 cut(s)	651
HapII	CCGG	1 cut(s)	756
HhaI	GCGC	1 cut(s)	642
Hin1II	CATG	3 cut(s)	15, 280, 323
Hin6I	GCGC	1 cut(s)	640
HinP1I	GCGC	1 cut(s)	640
HinfI	GANTC	1 cut(s)	683
HpaII	CCGG	1 cut(s)	756
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	1 cut(s)	468
Hpy188I	TCNGA	6 cut(s)	480, 607, 636, 682, 768, 812
Hpy188III	TCNNGA	5 cut(s)	75, 223, 596, 756, 805
Hpy8I	GTNNAC	1 cut(s)	468
HpyAV	CCTTC	8 cut(s)	162, 167, 214, 328, 498, 660, 689, 730
HpyCH4III	ACNGT	2 cut(s)	34, 362
HpyCH4V	TGCA	5 cut(s)	15, 488, 585, 692, 795
HpyF10VI	GCNNNNNNNGC	4 cut(s)	304, 582, 648, 705
HpyF3I	CTNAG	4 cut(s)	73, 479, 531, 723
Hsp92II	CATG	3 cut(s)	15, 280, 323
HspAI	GCGC	1 cut(s)	640
Kpn2I	TCCGGA	1 cut(s)	755
Kzo9I	GATC	6 cut(s)	410, 475, 558, 752, 768, 807
LmnI	GCTCC	2 cut(s)	90, 541
Lsp1109I	GCAGC	1 cut(s)	597
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	1 cut(s)	717
MaeIII	GTNAC	1 cut(s)	518
MalI	GATC	6 cut(s)	412, 477, 560, 754, 770, 809
MboI	GATC	6 cut(s)	410, 475, 558, 752, 768, 807
MflI	RGATCY	2 cut(s)	410, 752
MhlI	GDGCHC	1 cut(s)	55
MlsI	TGGCCA	1 cut(s)	651
MluCI	AATT	5 cut(s)	83, 374, 608, 673, 762
MluNI	TGGCCA	1 cut(s)	651
MlyI	GAGTC	1 cut(s)	692
MmeI	TCCRAC	1 cut(s)	614
Mox20I	TGGCCA	1 cut(s)	651
Mph1103I	ATGCAT	1 cut(s)	17
MroI	TCCGGA	1 cut(s)	755
MscI	TGGCCA	1 cut(s)	651
MseI	TTAA	1 cut(s)	140
Msp20I	TGGCCA	1 cut(s)	651
MspA1I	CMGCKG	1 cut(s)	473
MspI	CCGG	1 cut(s)	756
MspR9I	CCNGG	1 cut(s)	218
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	4 cut(s)	304, 582, 648, 705
NdeII	GATC	6 cut(s)	410, 475, 558, 752, 768, 807
NlaIII	CATG	3 cut(s)	15, 280, 323
NlaIV	GGNNCC	2 cut(s)	537, 754
NmuCI	GTSAC	1 cut(s)	518
NsiI	ATGCAT	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	325
PkrI	GCNGC	2 cut(s)	587, 707
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
Psp6I	CCWGG	1 cut(s)	216
PspFI	CCCAGC	1 cut(s)	554
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	2 cut(s)	537, 754
PspPI	GGNCC	1 cut(s)	105
PstNI	CAGNNNCTG	1 cut(s)	430
PsuI	RGATCY	2 cut(s)	410, 752
PvuII	CAGCTG	1 cut(s)	473
RsaI	GTAC	4 cut(s)	24, 359, 469, 721
RsaNI	GTAC	4 cut(s)	23, 358, 468, 720
SaqAI	TTAA	1 cut(s)	140
SatI	GCNGC	2 cut(s)	586, 706
Sau3AI	GATC	6 cut(s)	410, 475, 558, 752, 768, 807
Sau96I	GGNCC	1 cut(s)	105
ScaI	AGTACT	1 cut(s)	721
SchI	GAGTC	1 cut(s)	692
ScrFI	CCNGG	1 cut(s)	218
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	9 cut(s)	232, 243, 354, 432, 475, 495, 516, 603, 741
SfaNI	GCATC	1 cut(s)	475
SfcI	CTRYAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
SpeI	ACTAGT	1 cut(s)	716
Sse9I	AATT	5 cut(s)	83, 374, 608, 673, 762
SsiI	CCGC	2 cut(s)	625, 706
SspMI	CTAG	1 cut(s)	717
StyD4I	CCNGG	1 cut(s)	216
StyI	CCWWGG	1 cut(s)	55
TaaI	ACNGT	2 cut(s)	34, 362
TaqI	TCGA	1 cut(s)	788
TasI	AATT	5 cut(s)	83, 374, 608, 673, 762
TatI	WGTACW	3 cut(s)	357, 467, 719
TauI	GCSGC	1 cut(s)	708
Tru1I	TTAA	1 cut(s)	140
Tru9I	TTAA	1 cut(s)	140
TseFI	GTSAC	1 cut(s)	518
TseI	GCWGC	1 cut(s)	585
Tsp45I	GTSAC	1 cut(s)	518
TspDTI	ATGAA	1 cut(s)	672
Van91I	CCANNNNNTGG	1 cut(s)	325
VpaK11BI	GGWCC	1 cut(s)	105
XapI	RAATTY	3 cut(s)	608, 673, 762
XspI	CTAG	1 cut(s)	717
ZrmI	AGTACT	1 cut(s)	721
Zsp2I	ATGCAT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.