Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Reverse (-)

12767379 .. 12769450

Gene Structure 2072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g19650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAGAGGCAAACTTGGAAAGAAAAGATGCTCAACAAGAATGACGATGAAGTTGAAGATGACTCAGACGAAGATGAGACTTGTGGCCATGGTAGCGGGTTGATCAGCATAAAATTTGAAGAAAATGAGAAACACAAGGTCAAGACAGCTGGGAGTACTGGAAAAAAATCAGGATCCGGTAGTGGAGGTGGAGGTGGAGCGTCGTCGGCACCGAGTTGTCAAGCTGATAGGTGTGGTGTTGATCTAGGTGATGCAAAGATCTACCATCGCCGCCATAAGGTTTGTGAGTTTCACTCCAAGGCAGCTGTTGTGGTCGTTTCCGGTGCTCGACAGAGGTTTTGTCAGCAATGCAGCAGGTTCCATGAGGTAGCTGAGTTTGATGAAACAAAGAGAAGCTGTCGCCGACGCTTGGCAGGTCACAATGAGAGGCGCCGCAAGAGTTCAGGTGAACCTTATGGAGAGGGCTCAAGCCGCAGGAGTATCAGTCATCAATACCGATCAGAGAGTACACCGGCTACTACTAAATATCATATGACAACCCCAGCCCCCAGGAAACTCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

188

Amino Acids

20.74

Weight (kDa)

9.02

Isoelectric Point (pI)

62.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	73 - 146	7.8e-32	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	345, 404
AccB1I	GGYRCC	2 cut(s)	208, 429
AciI	CCGC	4 cut(s)	96, 271, 433, 472
AclWI	GGATC	2 cut(s)	168, 181
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	430
AfaI	GTAC	2 cut(s)	157, 508
AfiI	CCNNNNNNNGG	2 cut(s)	277, 409
AgsI	TTSAA	2 cut(s)	56, 119
AjnI	CCWGG	1 cut(s)	548
AluBI	AGCT	5 cut(s)	149, 224, 305, 371, 396
AluI	AGCT	5 cut(s)	149, 224, 305, 371, 396
Alw21I	GWGCWC	1 cut(s)	328
Alw26I	GTCTC	1 cut(s)	71
AlwI	GGATC	2 cut(s)	168, 181
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	2 cut(s)	302, 351
ApoI	RAATTY	1 cut(s)	113
ArsI	GACNNNNNNTTYG	2 cut(s)	321, 353
AspLEI	GCGC	1 cut(s)	432
AsuHPI	GGTGA	2 cut(s)	260, 458
BalI	TGGCCA	1 cut(s)	87
BamHI	GGATCC	1 cut(s)	173
BanI	GGYRCC	2 cut(s)	208, 429
BanII	GRGCYC	1 cut(s)	467
Bbv12I	GWGCWC	1 cut(s)	328
BbvI	GCAGC	2 cut(s)	314, 363
BccI	CCATC	1 cut(s)	273
BciT130I	CCWGG	1 cut(s)	550
BclI	TGATCA	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	71
BfaI	CTAG	1 cut(s)	245
BfoI	RGCGCY	1 cut(s)	433
BfuAI	ACCTGC	2 cut(s)	345, 404
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	5 cut(s)	271, 303, 352, 433, 472
BlsI	GCNGC	5 cut(s)	272, 304, 353, 434, 473
BmcAI	AGTACT	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	550
BmiI	GGNNCC	4 cut(s)	175, 210, 359, 431
BmrFI	CCNGG	1 cut(s)	550
BmsI	GCATC	2 cut(s)	18, 241
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpuEI	CTTGAG	1 cut(s)	451
BsaHI	GRCGYC	1 cut(s)	430
BsaJI	CCNNGG	3 cut(s)	88, 297, 548
BsaWI	WCCGGW	2 cut(s)	176, 320
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 409
Bse118I	RCCGGY	1 cut(s)	511
Bse1I	ACTGG	1 cut(s)	163
Bse3DI	GCAATG	1 cut(s)	353
BseBI	CCWGG	1 cut(s)	550
BseDI	CCNNGG	3 cut(s)	88, 297, 548
BseLI	CCNNNNNNNGG	2 cut(s)	277, 409
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	2 cut(s)	78, 363
BseNI	ACTGG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	314, 363
BseYI	CCCAGC	2 cut(s)	149, 541
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	2 cut(s)	208, 429
BsiHKAI	GWGCWC	1 cut(s)	328
BsiSI	CCGG	3 cut(s)	177, 321, 512
BslI	CCNNNNNNNGG	2 cut(s)	277, 409
BsmAI	GTCTC	1 cut(s)	71
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	328, 467
Bsp143I	GATC	5 cut(s)	102, 173, 241, 258, 497
Bsp19I	CCATGG	1 cut(s)	88
BspACI	CCGC	4 cut(s)	96, 271, 433, 472
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	2 cut(s)	77, 364
BspLI	GGNNCC	4 cut(s)	175, 210, 359, 431
BspMI	ACCTGC	2 cut(s)	345, 404
BspPI	GGATC	2 cut(s)	168, 181
BspT107I	GGYRCC	2 cut(s)	208, 429
BsrDI	GCAATG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	511
BsrI	ACTGG	1 cut(s)	163
BssAI	RCCGGY	1 cut(s)	511
BssECI	CCNNGG	3 cut(s)	88, 297, 548
BssMI	GATC	5 cut(s)	102, 173, 241, 258, 497
BssNI	GRCGYC	1 cut(s)	430
BssT1I	CCWWGG	2 cut(s)	88, 297
Bst2UI	CCWGG	1 cut(s)	550
BstACI	GRCGYC	1 cut(s)	430
BstDEI	CTNAG	2 cut(s)	64, 372
BstDSI	CCRYGG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	5 cut(s)	105, 176, 244, 261, 500
BstMAI	GTCTC	1 cut(s)	71
BstMBI	GATC	5 cut(s)	102, 173, 241, 258, 497
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 206, 471
BstNI	CCWGG	1 cut(s)	550
BstSCI	CCNGG	1 cut(s)	548
BstV1I	GCAGC	2 cut(s)	314, 363
BstX2I	RGATCY	2 cut(s)	173, 258
BstYI	RGATCY	2 cut(s)	173, 258
BsuRI	GGCC	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	88
BtgZI	GCGATG	1 cut(s)	251
BveI	ACCTGC	2 cut(s)	345, 404
CfoI	GCGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	511
CseI	GACGC	2 cut(s)	189, 414
Csp6I	GTAC	2 cut(s)	156, 507
CviAII	CATG	2 cut(s)	89, 362
CviQI	GTAC	2 cut(s)	156, 507
DdeI	CTNAG	2 cut(s)	64, 372
DinI	GGCGCC	1 cut(s)	431
DpnI	GATC	5 cut(s)	104, 175, 243, 260, 499
DpnII	GATC	5 cut(s)	102, 173, 241, 258, 497
EaeI	YGGCCR	1 cut(s)	85
Eco130I	CCWWGG	2 cut(s)	88, 297
Eco24I	GRGCYC	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	548
EcoT14I	CCWWGG	2 cut(s)	88, 297
EcoT38I	GRGCYC	1 cut(s)	467
EgeI	GGCGCC	1 cut(s)	431
EheI	GGCGCC	1 cut(s)	431
ErhI	CCWWGG	2 cut(s)	88, 297
FaeI	CATG	2 cut(s)	92, 365
FaiI	YATR	7 cut(s)	90, 110, 276, 363, 456, 531, 533
FatI	CATG	2 cut(s)	88, 361
FauI	CCCGC	1 cut(s)	89
FauNDI	CATATG	1 cut(s)	531
FbaI	TGATCA	1 cut(s)	102
Fnu4HI	GCNGC	5 cut(s)	271, 303, 352, 433, 472
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	5 cut(s)	271, 303, 352, 433, 472
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	1 cut(s)	431
GluI	GCNGC	5 cut(s)	271, 303, 352, 433, 472
GsaI	CCCAGC	2 cut(s)	153, 545
HaeII	RGCGCY	1 cut(s)	433
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	3 cut(s)	177, 321, 512
HgaI	GACGC	2 cut(s)	189, 414
HhaI	GCGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	430
Hin1II	CATG	2 cut(s)	92, 365
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	3 cut(s)	177, 321, 512
HphI	GGTGA	2 cut(s)	260, 458
Hpy166II	GTNNAC	2 cut(s)	449, 509
Hpy188I	TCNGA	2 cut(s)	67, 502
Hpy188III	TCNNGA	2 cut(s)	142, 171
Hpy8I	GTNNAC	2 cut(s)	449, 509
Hpy99I	CGWCG	3 cut(s)	205, 208, 408
HpyCH4V	TGCA	2 cut(s)	254, 351
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 206, 471
HpyF3I	CTNAG	2 cut(s)	64, 372
Hsp92I	GRCGYC	1 cut(s)	430
Hsp92II	CATG	2 cut(s)	92, 365
HspAI	GCGC	1 cut(s)	430
KasI	GGCGCC	1 cut(s)	429
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	5 cut(s)	102, 173, 241, 258, 497
LmnI	GCTCC	1 cut(s)	197
Lsp1109I	GCAGC	2 cut(s)	314, 363
LweI	GCATC	2 cut(s)	18, 241
MaeI	CTAG	1 cut(s)	245
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	5 cut(s)	104, 175, 243, 260, 499
MboI	GATC	5 cut(s)	102, 173, 241, 258, 497
MboII	GAAGA	3 cut(s)	68, 83, 131
MflI	RGATCY	2 cut(s)	173, 258
MhlI	GDGCHC	2 cut(s)	328, 467
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	1 cut(s)	113
MluNI	TGGCCA	1 cut(s)	87
Mly113I	GGCGCC	1 cut(s)	430
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	6 cut(s)	179, 185, 327, 358, 420, 454
Mox20I	TGGCCA	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	87
MspA1I	CMGCKG	2 cut(s)	149, 305
MspI	CCGG	3 cut(s)	177, 321, 512
MspR9I	CCNGG	1 cut(s)	550
MvaI	CCWGG	1 cut(s)	550
MwoI	GCNNNNNNNGC	3 cut(s)	93, 206, 471
NarI	GGCGCC	1 cut(s)	430
NcoI	CCATGG	1 cut(s)	88
NdeI	CATATG	1 cut(s)	531
NdeII	GATC	5 cut(s)	102, 173, 241, 258, 497
NlaIII	CATG	2 cut(s)	92, 365
NlaIV	GGNNCC	4 cut(s)	175, 210, 359, 431
NmuCI	GTSAC	1 cut(s)	416
PcsI	WCGNNNNNNNCGW	1 cut(s)	209
PkrI	GCNGC	5 cut(s)	272, 304, 353, 434, 473
PleI	GAGTC	1 cut(s)	56
PluTI	GGCGCC	1 cut(s)	433
PpsI	GAGTC	1 cut(s)	56
Psp6I	CCWGG	1 cut(s)	548
PspFI	CCCAGC	2 cut(s)	149, 541
PspGI	CCWGG	1 cut(s)	548
PspN4I	GGNNCC	4 cut(s)	175, 210, 359, 431
PsuI	RGATCY	2 cut(s)	173, 258
PvuII	CAGCTG	2 cut(s)	149, 305
RsaI	GTAC	2 cut(s)	157, 508
RsaNI	GTAC	2 cut(s)	156, 507
SatI	GCNGC	5 cut(s)	271, 303, 352, 433, 472
Sau3AI	GATC	5 cut(s)	102, 173, 241, 258, 497
ScaI	AGTACT	1 cut(s)	157
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	550
SduI	GDGCHC	2 cut(s)	328, 467
SfaNI	GCATC	2 cut(s)	18, 241
SfoI	GGCGCC	1 cut(s)	431
SmlI	CTYRAG	1 cut(s)	466
SmoI	CTYRAG	1 cut(s)	466
Sse9I	AATT	1 cut(s)	113
SsiI	CCGC	4 cut(s)	96, 271, 433, 472
SspDI	GGCGCC	1 cut(s)	429
SspMI	CTAG	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	548
StyI	CCWWGG	2 cut(s)	88, 297
TaqI	TCGA	1 cut(s)	328
TasI	AATT	1 cut(s)	113
TatI	WGTACW	2 cut(s)	155, 506
TauI	GCSGC	3 cut(s)	273, 435, 474
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	2 cut(s)	302, 351
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	63, 396
XapI	RAATTY	1 cut(s)	113
XspI	CTAG	1 cut(s)	245
ZrmI	AGTACT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.