Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Forward (+)

44084037 .. 44085411

Gene Structure 1375 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG333700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGAGCAGATTGCTGTGGTCCTCACTACTCTTGCCTCATTACTCTCACTTTTTAATCTTCTCTCCTTCCCTTCCCCCAATACAAAACACCACATCACTAACAAACCCATTGATATCCTTCTTCCTCTTCCTGATCTTGATAGCTACAGACTACCTCATTTTCTCTTGTCTCCCTTGCTACTCTTTCTAATCATGGAAGAGAGTAAAAGCAAGCAGAGGAAGCAGGAGAACCCCCATGTGGTGGTGAAGAAGGAGGTGGAGGAGGAGGAGGTTCTGTACAGTAAGAAGAAGAAATTACAAGTTGTTAGTGGAAGTGGAAGTGGAAGTGGATCTGTGAAGAACCAGAACCTGAACCAGATGATGAGATGTTGTCAGGCTGACAAGTGTACAGCTGATCTGAGTGATGCAAAGCTCTACCATAGAAGGCATAAGGTGTGTGACCATCATTCTAAGGCTCCAGTTGTGCTTTTGGCTGGGATCAGCCAAAGATTTTGCCAGCAATGCAGCAGATTCCACGAGCTATCAGAATTTGATGACACCAAGAGGAGTTGTCGGAGGCGCTTGGCTGGCCACAATGAACGGCGAAGGAAGAATTCCTCCGAGTCTTATGCAGAAGGCTCAAGCCGCAAAGGGACTAGTACTCAGTCGTGTGGGAAGGTTGATGATATGGGATCCGGAAGAATTCAGATCAACATCCAAGAAAACTCGACTTGCAAGCATTTCCAGATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

244

Amino Acids

27.69

Weight (kDa)

9.36

Isoelectric Point (pI)

59.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	124 - 197	1.1e-32	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	241
AccIII	TCCGGA	1 cut(s)	674
AciI	CCGC	1 cut(s)	625
AclWI	GGATC	4 cut(s)	337, 485, 666, 679
AcoI	YGGCCR	1 cut(s)	568
AcsI	RAATTY	3 cut(s)	527, 592, 681
AfaI	GTAC	3 cut(s)	278, 388, 640
AfiI	CCNNNNNNNGG	2 cut(s)	238, 241
AhlI	ACTAGT	1 cut(s)	635
AluBI	AGCT	4 cut(s)	144, 392, 412, 520
AluI	AGCT	4 cut(s)	144, 392, 412, 520
Alw26I	GTCTC	1 cut(s)	174
AlwI	GGATC	4 cut(s)	337, 485, 666, 679
AlwNI	CAGNNNCTG	1 cut(s)	349
Aor13HI	TCCGGA	1 cut(s)	674
AoxI	GGCC	1 cut(s)	568
ApeKI	GCWGC	1 cut(s)	504
ApoI	RAATTY	3 cut(s)	527, 592, 681
AspLEI	GCGC	1 cut(s)	561
AspS9I	GGNCC	1 cut(s)	19
AsuHPI	GGTGA	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	19
BalI	TGGCCA	1 cut(s)	570
BamHI	GGATCC	1 cut(s)	671
BauI	CACGAG	1 cut(s)	515
BbvI	GCAGC	1 cut(s)	516
BccI	CCATC	1 cut(s)	450
BceAI	ACGGC	1 cut(s)	596
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BcoDI	GTCTC	1 cut(s)	174
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	1 cut(s)	636
BfmI	CTRYAG	1 cut(s)	145
BfoI	RGCGCY	1 cut(s)	562
BisI	GCNGC	2 cut(s)	505, 625
BlsI	GCNGC	2 cut(s)	506, 626
BmcAI	AGTACT	1 cut(s)	640
Bme18I	GGWCC	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	19
BmiI	GGNNCC	2 cut(s)	456, 673
BmsI	GCATC	1 cut(s)	394
BpmI	CTGGAG	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	604
BsaBI	GATNNNNATC	1 cut(s)	692
BsaWI	WCCGGW	1 cut(s)	674
BsaXI	ACNNNNNCTCC	2 cut(s)	260, 290
Bsc4I	CCNNNNNNNGG	2 cut(s)	238, 241
Bse1I	ACTGG	1 cut(s)	458
Bse3DI	GCAATG	1 cut(s)	506
Bse8I	GATNNNNATC	1 cut(s)	692
BseAI	TCCGGA	1 cut(s)	674
BseGI	GGATG	1 cut(s)	693
BseJI	GATNNNNATC	1 cut(s)	692
BseLI	CCNNNNNNNGG	2 cut(s)	238, 241
BseMI	GCAATG	1 cut(s)	506
BseMII	CTCAG	2 cut(s)	389, 656
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	4 cut(s)	275, 278, 281, 559
BseXI	GCAGC	1 cut(s)	516
BseYI	CCCAGC	1 cut(s)	473
BshFI	GGCC	1 cut(s)	570
BsiSI	CCGG	1 cut(s)	675
BslFI	GGGAC	1 cut(s)	646
BslI	CCNNNNNNNGG	2 cut(s)	238, 241
BsmAI	GTCTC	1 cut(s)	174
BsmFI	GGGAC	1 cut(s)	646
BsnI	GGCC	1 cut(s)	570
Bsp13I	TCCGGA	1 cut(s)	674
Bsp1407I	TGTACA	2 cut(s)	276, 386
Bsp143I	GATC	7 cut(s)	133, 329, 394, 477, 671, 687, 726
BspACI	CCGC	1 cut(s)	625
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	2 cut(s)	390, 655
BspEI	TCCGGA	1 cut(s)	674
BspLI	GGNNCC	2 cut(s)	456, 673
BspPI	GGATC	4 cut(s)	337, 485, 666, 679
BsrDI	GCAATG	1 cut(s)	506
BsrGI	TGTACA	2 cut(s)	276, 386
BsrI	ACTGG	1 cut(s)	458
BssMI	GATC	7 cut(s)	133, 329, 394, 477, 671, 687, 726
BssSI	CACGAG	1 cut(s)	515
Bst2BI	CACGAG	1 cut(s)	515
Bst4CI	ACNGT	1 cut(s)	281
Bst6I	CTCTTC	2 cut(s)	132, 192
BstAUI	TGTACA	2 cut(s)	276, 386
BstC8I	GCNNGC	4 cut(s)	212, 497, 568, 716
BstDEI	CTNAG	3 cut(s)	398, 450, 642
BstF5I	GGATG	1 cut(s)	693
BstH2I	RGCGCY	1 cut(s)	562
BstHHI	GCGC	1 cut(s)	561
BstKTI	GATC	7 cut(s)	136, 332, 397, 480, 674, 690, 729
BstMAI	GTCTC	1 cut(s)	174
BstMBI	GATC	7 cut(s)	133, 329, 394, 477, 671, 687, 726
BstMWI	GCNNNNNNNGC	4 cut(s)	220, 501, 567, 624
BstSFI	CTRYAG	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	516
BstX2I	RGATCY	2 cut(s)	329, 671
BstYI	RGATCY	2 cut(s)	329, 671
BsuRI	GGCC	1 cut(s)	570
BtsCI	GGATG	1 cut(s)	693
Cac8I	GCNNGC	4 cut(s)	212, 497, 568, 716
CaiI	CAGNNNCTG	1 cut(s)	349
CfoI	GCGC	1 cut(s)	561
Cfr13I	GGNCC	1 cut(s)	19
Csp6I	GTAC	3 cut(s)	277, 387, 639
CviAII	CATG	2 cut(s)	193, 236
CviQI	GTAC	3 cut(s)	277, 387, 639
DdeI	CTNAG	3 cut(s)	398, 450, 642
DpnI	GATC	7 cut(s)	135, 331, 396, 479, 673, 689, 728
DpnII	GATC	7 cut(s)	133, 329, 394, 477, 671, 687, 726
EaeI	YGGCCR	1 cut(s)	568
Eam1104I	CTCTTC	2 cut(s)	132, 192
EarI	CTCTTC	2 cut(s)	132, 192
Eco32I	GATATC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	19
EcoRI	GAATTC	2 cut(s)	592, 681
EcoRV	GATATC	1 cut(s)	115
FaeI	CATG	2 cut(s)	196, 239
FaiI	YATR	6 cut(s)	194, 237, 420, 429, 609, 668
FaqI	GGGAC	1 cut(s)	646
FatI	CATG	2 cut(s)	192, 235
Fnu4HI	GCNGC	2 cut(s)	505, 625
FokI	GGATG	1 cut(s)	680
Fsp4HI	GCNGC	2 cut(s)	505, 625
FspBI	CTAG	1 cut(s)	636
GlaI	GCGC	1 cut(s)	560
GluI	GCNGC	2 cut(s)	505, 625
GsaI	CCCAGC	1 cut(s)	477
GsuI	CTGGAG	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	562
HaeIII	GGCC	1 cut(s)	570
HapII	CCGG	1 cut(s)	675
HhaI	GCGC	1 cut(s)	561
Hin1II	CATG	2 cut(s)	196, 239
Hin6I	GCGC	1 cut(s)	559
HinP1I	GCGC	1 cut(s)	559
HinfI	GANTC	2 cut(s)	510, 602
HpaII	CCGG	1 cut(s)	675
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	387
Hpy188I	TCNGA	6 cut(s)	399, 526, 555, 601, 687, 731
Hpy188III	TCNNGA	4 cut(s)	131, 137, 675, 724
Hpy8I	GTNNAC	1 cut(s)	387
HpyAV	CCTTC	8 cut(s)	76, 81, 128, 244, 417, 579, 608, 649
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	4 cut(s)	407, 504, 611, 714
HpyF10VI	GCNNNNNNNGC	4 cut(s)	220, 501, 567, 624
HpyF3I	CTNAG	3 cut(s)	398, 450, 642
Hsp92II	CATG	2 cut(s)	196, 239
HspAI	GCGC	1 cut(s)	559
Kpn2I	TCCGGA	1 cut(s)	674
Kzo9I	GATC	7 cut(s)	133, 329, 394, 477, 671, 687, 726
LmnI	GCTCC	2 cut(s)	4, 460
Lsp1109I	GCAGC	1 cut(s)	516
LweI	GCATC	1 cut(s)	394
MaeI	CTAG	1 cut(s)	636
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	7 cut(s)	135, 331, 396, 479, 673, 689, 728
MboI	GATC	7 cut(s)	133, 329, 394, 477, 671, 687, 726
MflI	RGATCY	2 cut(s)	329, 671
MlsI	TGGCCA	1 cut(s)	570
MluCI	AATT	4 cut(s)	293, 527, 592, 681
MluNI	TGGCCA	1 cut(s)	570
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	1 cut(s)	533
Mox20I	TGGCCA	1 cut(s)	570
MroI	TCCGGA	1 cut(s)	674
MscI	TGGCCA	1 cut(s)	570
MseI	TTAA	1 cut(s)	54
Msp20I	TGGCCA	1 cut(s)	570
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	4 cut(s)	220, 501, 567, 624
NdeII	GATC	7 cut(s)	133, 329, 394, 477, 671, 687, 726
NlaIII	CATG	2 cut(s)	196, 239
NlaIV	GGNNCC	2 cut(s)	456, 673
NmuCI	GTSAC	1 cut(s)	437
PfeI	GAWTC	1 cut(s)	510
PflMI	CCANNNNNTGG	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	506, 626
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
PspFI	CCCAGC	1 cut(s)	473
PspN4I	GGNNCC	2 cut(s)	456, 673
PspPI	GGNCC	1 cut(s)	19
PstNI	CAGNNNCTG	1 cut(s)	349
PsuI	RGATCY	2 cut(s)	329, 671
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	3 cut(s)	278, 388, 640
RsaNI	GTAC	3 cut(s)	277, 387, 639
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	505, 625
Sau3AI	GATC	7 cut(s)	133, 329, 394, 477, 671, 687, 726
Sau96I	GGNCC	1 cut(s)	19
ScaI	AGTACT	1 cut(s)	640
SchI	GAGTC	1 cut(s)	611
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	145
SinI	GGWCC	1 cut(s)	19
SmlI	CTYRAG	1 cut(s)	619
SmoI	CTYRAG	1 cut(s)	619
SpeI	ACTAGT	1 cut(s)	635
Sse9I	AATT	4 cut(s)	293, 527, 592, 681
SsiI	CCGC	1 cut(s)	625
SspMI	CTAG	1 cut(s)	636
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	707
TasI	AATT	4 cut(s)	293, 527, 592, 681
TatI	WGTACW	3 cut(s)	276, 386, 638
TauI	GCSGC	1 cut(s)	627
TfiI	GAWTC	1 cut(s)	510
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	1 cut(s)	504
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	1 cut(s)	591
Van91I	CCANNNNNTGG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	3 cut(s)	527, 592, 681
XspI	CTAG	1 cut(s)	636
ZrmI	AGTACT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.