Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Reverse (-)

16458568 .. 16459755

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g16260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAGGGAATGAGTAAGTTGGACTTGAACAAGCAGATGAGGGAGAAGCCGCGGGTGGTGGCGGTGGTGAAGAAGGAGGAGGAGGAATTTGATGGTGAGCTGCAAGTAGACGGGAAGAAGAAAGGAGGCGTGAAGAGATCGTTGTCCTCGTCCTCGTCATCCGGTGGAGGAGGAGGCGGCGCAATGAGATGGTGTCAGGCGGACAGGTGCACGGCTGATCTGAGTGAAGAAAAGCAGTATCATAGAAAGCATAAAGTTTGTGACCTTCATTCCAAGTCTCAGGTTGTGCTTGTCTCTGGCCTTCACCAAAGGTTTTGCCAGCAATGCAGCAGATTTCATCAGCTACCAGAATTCGACGACACCAAAAGGAGTTGTCGCAGGCGTCTGGCAGGACACAATGAACGACGAAGGAAGAATCCAGCCGAGTCTCATGCAGTGGAAGGCTCAAGCCGAAATGTTGGTGCAGGGACTCAGTTCAAGGCTGTATGCGGGCAGGTTGATGACAGCGGAAGAATTCGGATAACCATTCCAGGAAATTCAACTCACAAGCATTTCCATATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009791 GO:0009889 GO:0009908 GO:0009909 GO:0009911 GO:0010228 GO:0010229 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048367 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

189

Amino Acids

21.07

Weight (kDa)

9.71

Isoelectric Point (pI)

66.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	1 cut(s)	52
AciI	CCGC	7 cut(s)	50, 52, 62, 177, 200, 489, 507
AcsI	RAATTY	4 cut(s)	86, 350, 513, 535
AcyI	GRCGYC	1 cut(s)	382
AgsI	TTSAA	3 cut(s)	28, 478, 540
AjnI	CCWGG	1 cut(s)	529
AluBI	AGCT	2 cut(s)	100, 343
AluI	AGCT	2 cut(s)	100, 343
Alw21I	GWGCWC	1 cut(s)	212
Alw26I	GTCTC	3 cut(s)	282, 298, 432
Alw44I	GTGCAC	1 cut(s)	208
AoxI	GGCC	1 cut(s)	298
ApaLI	GTGCAC	1 cut(s)	208
ApeKI	GCWGC	2 cut(s)	100, 327
ApoI	RAATTY	4 cut(s)	86, 350, 513, 535
AspLEI	GCGC	1 cut(s)	182
AsuHPI	GGTGA	3 cut(s)	79, 107, 296
BaeGI	GKGCMC	1 cut(s)	212
Bbv12I	GWGCWC	1 cut(s)	212
BbvI	GCAGC	2 cut(s)	87, 339
BccI	CCATC	2 cut(s)	86, 183
BceAI	ACGGC	1 cut(s)	228
BcgI	CGANNNNNNTGC	2 cut(s)	413, 447
BciT130I	CCWGG	1 cut(s)	531
BcoDI	GTCTC	3 cut(s)	282, 298, 432
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	4 cut(s)	50, 101, 178, 328
BlsI	GCNGC	4 cut(s)	51, 102, 179, 329
Bme1390I	CCNGG	1 cut(s)	531
BmrFI	CCNGG	1 cut(s)	531
BpuEI	CTTGAG	1 cut(s)	430
BsaHI	GRCGYC	1 cut(s)	382
BsaJI	CCNNGG	1 cut(s)	50
BsaWI	WCCGGW	1 cut(s)	161
Bse3DI	GCAATG	2 cut(s)	189, 329
BseBI	CCWGG	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	1 cut(s)	158
BseMI	GCAATG	2 cut(s)	189, 329
BseMII	CTCAG	3 cut(s)	212, 293, 485
BseRI	GAGGAG	4 cut(s)	92, 95, 183, 186
BseSI	GKGCMC	1 cut(s)	212
BseXI	GCAGC	2 cut(s)	87, 339
BsgI	GTGCAG	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	212
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	481
BsmAI	GTCTC	3 cut(s)	282, 298, 432
BsmFI	GGGAC	1 cut(s)	481
BsnI	GGCC	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	137, 217
BspACI	CCGC	7 cut(s)	50, 52, 62, 177, 200, 489, 507
BspANI	GGCC	1 cut(s)	300
BspCNI	CTCAG	3 cut(s)	213, 292, 484
BspFNI	CGCG	1 cut(s)	52
BspMI	ACCTGC	1 cut(s)	484
BsrDI	GCAATG	2 cut(s)	189, 329
BssECI	CCNNGG	1 cut(s)	50
BssMI	GATC	2 cut(s)	137, 217
BssNI	GRCGYC	1 cut(s)	382
Bst2UI	CCWGG	1 cut(s)	531
Bst6I	CTCTTC	1 cut(s)	128
BstACI	GRCGYC	1 cut(s)	382
BstC8I	GCNNGC	3 cut(s)	320, 380, 491
BstDEI	CTNAG	3 cut(s)	221, 279, 471
BstDSI	CCRYGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	158
BstFNI	CGCG	1 cut(s)	52
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	2 cut(s)	140, 220
BstMAI	GTCTC	3 cut(s)	282, 298, 432
BstMBI	GATC	2 cut(s)	137, 217
BstMWI	GCNNNNNNNGC	1 cut(s)	324
BstNI	CCWGG	1 cut(s)	531
BstSCI	CCNGG	1 cut(s)	529
BstSLI	GKGCMC	1 cut(s)	212
BstUI	CGCG	1 cut(s)	52
BstV1I	GCAGC	2 cut(s)	87, 339
BsuRI	GGCC	1 cut(s)	300
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	1 cut(s)	158
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	441
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	3 cut(s)	320, 380, 491
CfoI	GCGC	1 cut(s)	182
Cfr42I	CCGCGG	1 cut(s)	53
CseI	GACGC	1 cut(s)	371
CviAII	CATG	1 cut(s)	431
CviJI	RGCY	9 cut(s)	49, 100, 215, 300, 343, 422, 444, 450, 482
CviKI_1	RGCY	9 cut(s)	49, 100, 215, 300, 343, 422, 444, 450, 482
DdeI	CTNAG	3 cut(s)	221, 279, 471
DpnI	GATC	2 cut(s)	139, 219
DpnII	GATC	2 cut(s)	137, 217
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EciI	GGCGGA	1 cut(s)	215
EcoRI	GAATTC	2 cut(s)	350, 513
EcoRII	CCWGG	1 cut(s)	529
FaeI	CATG	1 cut(s)	434
FaiI	YATR	5 cut(s)	243, 252, 432, 487, 558
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	1 cut(s)	481
FatI	CATG	1 cut(s)	430
FauI	CCCGC	2 cut(s)	45, 482
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	4 cut(s)	50, 101, 178, 328
FokI	GGATG	1 cut(s)	145
Fsp4HI	GCNGC	4 cut(s)	50, 101, 178, 328
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	4 cut(s)	50, 101, 178, 328
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	371
HhaI	GCGC	1 cut(s)	182
Hin1I	GRCGYC	1 cut(s)	382
Hin1II	CATG	1 cut(s)	434
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HinfI	GANTC	3 cut(s)	415, 425, 469
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	3 cut(s)	79, 107, 296
Hpy166II	GTNNAC	2 cut(s)	109, 210
Hpy188I	TCNGA	3 cut(s)	222, 519, 563
Hpy8I	GTNNAC	2 cut(s)	109, 210
Hpy99I	CGWCG	2 cut(s)	359, 408
HpyAV	CCTTC	5 cut(s)	67, 275, 311, 402, 434
HpyCH4V	TGCA	5 cut(s)	103, 210, 327, 434, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	324
HpyF3I	CTNAG	3 cut(s)	221, 279, 471
Hsp92I	GRCGYC	1 cut(s)	382
Hsp92II	CATG	1 cut(s)	434
HspAI	GCGC	1 cut(s)	180
KspI	CCGCGG	1 cut(s)	53
Kzo9I	GATC	2 cut(s)	137, 217
Lsp1109I	GCAGC	2 cut(s)	87, 339
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	2 cut(s)	139, 219
MboI	GATC	2 cut(s)	137, 217
MboII	GAAGA	7 cut(s)	82, 127, 130, 145, 239, 424, 522
MhlI	GDGCHC	1 cut(s)	212
MluCI	AATT	4 cut(s)	86, 350, 513, 535
MlyI	GAGTC	2 cut(s)	434, 463
MspA1I	CMGCKG	2 cut(s)	52, 507
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	531
MvaI	CCWGG	1 cut(s)	531
MvnI	CGCG	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	324
NdeII	GATC	2 cut(s)	137, 217
NlaIII	CATG	1 cut(s)	434
NmeAIII	GCCGAG	1 cut(s)	448
NmuCI	GTSAC	1 cut(s)	260
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	415
PfoI	TCCNGGA	1 cut(s)	529
PkrI	GCNGC	4 cut(s)	51, 102, 179, 329
PleI	GAGTC	2 cut(s)	433, 463
PpsI	GAGTC	2 cut(s)	433, 463
Psp6I	CCWGG	1 cut(s)	529
PspGI	CCWGG	1 cut(s)	529
SacII	CCGCGG	1 cut(s)	53
SatI	GCNGC	4 cut(s)	50, 101, 178, 328
Sau3AI	GATC	2 cut(s)	137, 217
SchI	GAGTC	2 cut(s)	434, 463
ScrFI	CCNGG	1 cut(s)	531
SduI	GDGCHC	1 cut(s)	212
SetI	ASST	7 cut(s)	102, 209, 267, 285, 314, 345, 498
Sfr303I	CCGCGG	1 cut(s)	53
SgrBI	CCGCGG	1 cut(s)	53
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	4 cut(s)	86, 350, 513, 535
SsiI	CCGC	7 cut(s)	50, 52, 62, 177, 200, 489, 507
StyD4I	CCNGG	1 cut(s)	529
TaqI	TCGA	1 cut(s)	354
TasI	AATT	4 cut(s)	86, 350, 513, 535
TauI	GCSGC	2 cut(s)	52, 180
TfiI	GAWTC	1 cut(s)	415
TscAI	CASTG	1 cut(s)	441
TseFI	GTSAC	1 cut(s)	260
TseI	GCWGC	2 cut(s)	100, 327
Tsp45I	GTSAC	1 cut(s)	260
TspDTI	ATGAA	3 cut(s)	257, 326, 414
TspRI	CASTG	1 cut(s)	441
VneI	GTGCAC	1 cut(s)	208
XapI	RAATTY	4 cut(s)	86, 350, 513, 535
XmiI	GTMKAC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.