Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000986.1

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Forward (+)

177572 .. 178816

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000986.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggacaggcaaacttggaaagaaaagatgctcaacaagaatgctgatgaagttgaagatgactcggacgaagatgagacttgtggccacggtagcgggttgatcagcataagatttgaagaaaatgagaagcacaaggtcaaggcagctgggagtactggaaaaaaatcaggatccagtagcggaggtggaggtggagcgtcttcagcaccgagttgtcaagcagataggtgtggtgctgatttgggtgatgcaaagatctaccatcgccgccataaggtttgtgagtttcactccaaggcagcgattgtggtcgtctccggggctcgacagaggttccatgagctagctgagtttgatgaagcaaagagaagctgtcgccgacgtttggcaggtcacaatgagaggcgccgcaagagctcaggtgaaccttatggagagggctcaagccgccggggtatcagtcatcaataccgatcagaaagtactcaggctactactaaatatcatatgacatccccagccccaggaaacactgctaattccaagcatttccagatcagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

188

Amino Acids

20.6

Weight (kDa)

9.11

Isoelectric Point (pI)

59.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	408
AciI	CCGC	5 cut(s)	96, 183, 271, 412, 451
AclWI	GGATC	2 cut(s)	168, 181
AcoI	YGGCCR	1 cut(s)	85
AcuI	CTGAAG	1 cut(s)	189
AcyI	GRCGYC	1 cut(s)	409
AfaI	GTAC	2 cut(s)	157, 487
AfiI	CCNNNNNNNGG	3 cut(s)	277, 388, 527
AgsI	TTSAA	2 cut(s)	56, 119
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	6 cut(s)	149, 346, 350, 375, 420, 564
AluI	AGCT	6 cut(s)	149, 346, 350, 375, 420, 564
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	2 cut(s)	71, 322
AlwI	GGATC	2 cut(s)	168, 181
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	2 cut(s)	146, 302
AspLEI	GCGC	1 cut(s)	411
AsuC2I	CCSGG	2 cut(s)	322, 455
AsuHPI	GGTGA	2 cut(s)	260, 437
AsuNHI	GCTAGC	1 cut(s)	346
BalI	TGGCCA	1 cut(s)	87
BamHI	GGATCC	1 cut(s)	173
BanI	GGYRCC	1 cut(s)	408
BanII	GRGCYC	3 cut(s)	328, 422, 446
BbsI	GAAGAC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	2 cut(s)	158, 314
BccI	CCATC	1 cut(s)	273
BciT130I	CCWGG	1 cut(s)	528
BclI	TGATCA	1 cut(s)	102
BcnI	CCSGG	2 cut(s)	322, 455
BcoDI	GTCTC	2 cut(s)	71, 322
BfaI	CTAG	1 cut(s)	347
BfoI	RGCGCY	1 cut(s)	412
BfuAI	ACCTGC	1 cut(s)	383
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	5 cut(s)	147, 271, 303, 412, 451
BlsI	GCNGC	5 cut(s)	148, 272, 304, 413, 452
BmcAI	AGTACT	2 cut(s)	157, 487
Bme1390I	CCNGG	3 cut(s)	322, 455, 528
BmiI	GGNNCC	3 cut(s)	175, 338, 410
BmrFI	CCNGG	3 cut(s)	322, 455, 528
BmsI	GCATC	2 cut(s)	18, 241
BmtI	GCTAGC	1 cut(s)	350
BpiI	GAAGAC	1 cut(s)	195
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
Bpu10I	CCTNAGC	1 cut(s)	421
BpuEI	CTTGAG	1 cut(s)	430
BpuMI	CCSGG	2 cut(s)	322, 455
BsaHI	GRCGYC	1 cut(s)	409
BsaJI	CCNNGG	5 cut(s)	88, 297, 321, 454, 526
Bsc4I	CCNNNNNNNGG	3 cut(s)	277, 388, 527
Bse1I	ACTGG	2 cut(s)	163, 177
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	5 cut(s)	88, 297, 321, 454, 526
BseGI	GGATG	1 cut(s)	515
BseLI	CCNNNNNNNGG	3 cut(s)	277, 388, 527
BseMII	CTCAG	3 cut(s)	342, 435, 503
BseNI	ACTGG	2 cut(s)	163, 177
BseXI	GCAGC	2 cut(s)	158, 314
BseYI	CCCAGC	2 cut(s)	149, 520
BshFI	GGCC	1 cut(s)	87
BshNI	GGYRCC	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	2 cut(s)	321, 454
BslI	CCNNNNNNNGG	3 cut(s)	277, 388, 527
BsmAI	GTCTC	2 cut(s)	71, 322
BsmBI	CGTCTC	1 cut(s)	322
BsmI	GAATGC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	3 cut(s)	328, 422, 446
Bsp143I	GATC	5 cut(s)	102, 173, 258, 476, 558
BspACI	CCGC	5 cut(s)	96, 183, 271, 412, 451
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	3 cut(s)	343, 434, 502
BspLI	GGNNCC	3 cut(s)	175, 338, 410
BspMI	ACCTGC	1 cut(s)	383
BspOI	GCTAGC	1 cut(s)	350
BspPI	GGATC	2 cut(s)	168, 181
BspT107I	GGYRCC	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	163, 177
BssECI	CCNNGG	5 cut(s)	88, 297, 321, 454, 526
BssMI	GATC	5 cut(s)	102, 173, 258, 476, 558
BssNI	GRCGYC	1 cut(s)	409
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	409
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	3 cut(s)	351, 421, 489
BstDSI	CCRYGG	1 cut(s)	88
BstF5I	GGATG	1 cut(s)	515
BstH2I	RGCGCY	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	411
BstKTI	GATC	5 cut(s)	105, 176, 261, 479, 561
BstMAI	GTCTC	2 cut(s)	71, 322
BstMBI	GATC	5 cut(s)	102, 173, 258, 476, 558
BstMWI	GCNNNNNNNGC	4 cut(s)	93, 206, 417, 450
BstNI	CCWGG	1 cut(s)	528
BstSCI	CCNGG	3 cut(s)	320, 453, 526
BstV1I	GCAGC	2 cut(s)	158, 314
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	2 cut(s)	173, 258
BstYI	RGATCY	2 cut(s)	173, 258
BsuRI	GGCC	1 cut(s)	87
BtgI	CCRYGG	1 cut(s)	88
BtgZI	GCGATG	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	515
BtsI	GCAGTG	1 cut(s)	534
BtsIMutI	CAGTG	1 cut(s)	534
BveI	ACCTGC	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	348
CfoI	GCGC	1 cut(s)	411
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	156, 486
CviAII	CATG	1 cut(s)	341
CviQI	GTAC	2 cut(s)	156, 486
DdeI	CTNAG	3 cut(s)	351, 421, 489
DinI	GGCGCC	1 cut(s)	410
DpnI	GATC	5 cut(s)	104, 175, 260, 478, 560
DpnII	GATC	5 cut(s)	102, 173, 258, 476, 558
EaeI	YGGCCR	1 cut(s)	85
Ecl136II	GAGCTC	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	3 cut(s)	328, 422, 446
Eco53kI	GAGCTC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	526
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	3 cut(s)	328, 422, 446
EgeI	GGCGCC	1 cut(s)	410
EheI	GGCGCC	1 cut(s)	410
ErhI	CCWWGG	1 cut(s)	297
Esp3I	CGTCTC	1 cut(s)	322
FaeI	CATG	1 cut(s)	344
FaiI	YATR	6 cut(s)	110, 276, 342, 435, 510, 512
FatI	CATG	1 cut(s)	340
FauI	CCCGC	1 cut(s)	89
FauNDI	CATATG	1 cut(s)	510
FbaI	TGATCA	1 cut(s)	102
Fnu4HI	GCNGC	5 cut(s)	147, 271, 303, 412, 451
FokI	GGATG	1 cut(s)	502
FriOI	GRGCYC	3 cut(s)	328, 422, 446
Fsp4HI	GCNGC	5 cut(s)	147, 271, 303, 412, 451
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	5 cut(s)	147, 271, 303, 412, 451
GsaI	CCCAGC	2 cut(s)	153, 524
HaeII	RGCGCY	1 cut(s)	412
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	2 cut(s)	321, 454
HgaI	GACGC	1 cut(s)	189
HhaI	GCGC	1 cut(s)	411
Hin1I	GRCGYC	1 cut(s)	409
Hin1II	CATG	1 cut(s)	344
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HinfI	GANTC	1 cut(s)	62
HpaII	CCGG	2 cut(s)	321, 454
HphI	GGTGA	2 cut(s)	260, 437
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	2 cut(s)	67, 481
Hpy188III	TCNNGA	2 cut(s)	171, 556
Hpy8I	GTNNAC	1 cut(s)	428
Hpy99I	CGWCG	1 cut(s)	387
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	385
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	4 cut(s)	93, 206, 417, 450
HpyF3I	CTNAG	3 cut(s)	351, 421, 489
HpySE526I	ACGT	1 cut(s)	385
Hsp92I	GRCGYC	1 cut(s)	409
Hsp92II	CATG	1 cut(s)	344
HspAI	GCGC	1 cut(s)	409
KasI	GGCGCC	1 cut(s)	408
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	5 cut(s)	102, 173, 258, 476, 558
LmnI	GCTCC	1 cut(s)	197
Lsp1109I	GCAGC	2 cut(s)	158, 314
LweI	GCATC	2 cut(s)	18, 241
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	385
MaeIII	GTNAC	1 cut(s)	395
MalI	GATC	5 cut(s)	104, 175, 260, 478, 560
MboI	GATC	5 cut(s)	102, 173, 258, 476, 558
MboII	GAAGA	4 cut(s)	68, 83, 131, 195
MflI	RGATCY	2 cut(s)	173, 258
MhlI	GDGCHC	3 cut(s)	328, 422, 446
MlsI	TGGCCA	1 cut(s)	87
MluCI	AATT	1 cut(s)	541
MluNI	TGGCCA	1 cut(s)	87
Mly113I	GGCGCC	1 cut(s)	409
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	5 cut(s)	179, 185, 327, 399, 433
Mox20I	TGGCCA	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	87
Msp20I	TGGCCA	1 cut(s)	87
MspA1I	CMGCKG	1 cut(s)	149
MspI	CCGG	2 cut(s)	321, 454
MspR9I	CCNGG	3 cut(s)	322, 455, 528
Mva1269I	GAATGC	1 cut(s)	46
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	4 cut(s)	93, 206, 417, 450
NarI	GGCGCC	1 cut(s)	409
NciI	CCSGG	2 cut(s)	322, 455
NdeI	CATATG	1 cut(s)	510
NdeII	GATC	5 cut(s)	102, 173, 258, 476, 558
NheI	GCTAGC	1 cut(s)	346
NlaIII	CATG	1 cut(s)	344
NlaIV	GGNNCC	3 cut(s)	175, 338, 410
NmuCI	GTSAC	1 cut(s)	395
PctI	GAATGC	1 cut(s)	46
PkrI	GCNGC	5 cut(s)	148, 272, 304, 413, 452
PleI	GAGTC	1 cut(s)	56
PluTI	GGCGCC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	56
Psp124BI	GAGCTC	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	526
PspFI	CCCAGC	2 cut(s)	149, 520
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	3 cut(s)	175, 338, 410
PsuI	RGATCY	2 cut(s)	173, 258
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	2 cut(s)	157, 487
RsaNI	GTAC	2 cut(s)	156, 486
SacI	GAGCTC	1 cut(s)	422
SatI	GCNGC	5 cut(s)	147, 271, 303, 412, 451
Sau3AI	GATC	5 cut(s)	102, 173, 258, 476, 558
ScaI	AGTACT	2 cut(s)	157, 487
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	3 cut(s)	322, 455, 528
SduI	GDGCHC	3 cut(s)	328, 422, 446
SfaNI	GCATC	2 cut(s)	18, 241
SfoI	GGCGCC	1 cut(s)	410
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	1 cut(s)	541
SsiI	CCGC	5 cut(s)	96, 183, 271, 412, 451
SspDI	GGCGCC	1 cut(s)	408
SspMI	CTAG	1 cut(s)	347
SstI	GAGCTC	1 cut(s)	422
StyD4I	CCNGG	3 cut(s)	320, 453, 526
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	388
TaqI	TCGA	1 cut(s)	328
TasI	AATT	1 cut(s)	541
TatI	WGTACW	2 cut(s)	155, 485
TauI	GCSGC	3 cut(s)	273, 414, 453
TscAI	CASTG	1 cut(s)	541
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	2 cut(s)	146, 302
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	63, 375
TspRI	CASTG	1 cut(s)	541
XspI	CTAG	1 cut(s)	347
ZrmI	AGTACT	2 cut(s)	157, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.