Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Forward (+)

36423432 .. 36425637

Gene Structure 2206 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1251800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAGGGCAAAAATTTTGAAGGAAGGCAAACATGGAAAGAGAAATCGAAGAAAGATGTTGAGGAAGTAGAGGATGACTACTCGGACGAAGAAGAGACTGGTGGCGGTGGTGGAGGGTTGATGCTGAGATTTGAAGAAAATGAGAGGCAGAAGAAAGCTGCTGCAGCTGGAAGAAGAGGATCTGGTGGTGGAGGTGGAGGTGGGGTTTCACAGCCATCTTGTCAAGCGGAAAGGTGCGGGGCTGATTTGGTTGATGCAAAGAGGTACCACCGCCGGCATAAGGTTTGTGAGTTTCATTCGAAGGCAGCTGTTGTGATTGTTTCCGGGACTCGACAGCGGTTTTGTCAGCAATGCAGCAGGTTCCATGAGCTAATCGAATTTGATGAAGCAAAGAGAAGCTGTCGCAGGCGTCTGGCAGGACACAATGAGCGACGCCGCAAGAGCTCAGGCGAACCTTATGGAGAAAGCTCAAGCCGGAGAGTGGTTGGTCACCAATACAAAGAAAGTCAGACTAGATATCAGATCACGCCCCCAGGAAACTCTTCCTCCAAGCATTGTCAGATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

190

Amino Acids

21.24

Weight (kDa)

9.31

Isoelectric Point (pI)

72.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	74 - 147	1.2e-31	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	348
Acc65I	GGTACC	1 cut(s)	264
AccB1I	GGYRCC	1 cut(s)	264
AciI	CCGC	6 cut(s)	105, 227, 237, 271, 337, 436
AclWI	GGATC	1 cut(s)	187
AcsI	RAATTY	2 cut(s)	13, 377
AcyI	GRCGYC	2 cut(s)	409, 433
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	280, 481
AgsI	TTSAA	2 cut(s)	20, 134
AjnI	CCWGG	1 cut(s)	532
AluBI	AGCT	7 cut(s)	158, 167, 308, 370, 399, 444, 468
AluI	AGCT	7 cut(s)	158, 167, 308, 370, 399, 444, 468
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	1 cut(s)	89
AlwI	GGATC	1 cut(s)	187
ApeKI	GCWGC	5 cut(s)	158, 161, 164, 305, 354
ApoI	RAATTY	2 cut(s)	13, 377
ArsI	GACNNNNNNTTYG	2 cut(s)	324, 356
Asp700I	GAANNNNTTC	1 cut(s)	541
Asp718I	GGTACC	1 cut(s)	264
AsuC2I	CCSGG	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	482
AsuII	TTCGAA	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	446
BbvI	GCAGC	5 cut(s)	145, 148, 176, 317, 366
BccI	CCATC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	534
BcnI	CCSGG	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	89
BfaI	CTAG	1 cut(s)	513
BfmI	CTRYAG	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	348
BisI	GCNGC	6 cut(s)	159, 162, 165, 306, 355, 436
BlsI	GCNGC	6 cut(s)	160, 163, 166, 307, 356, 437
Bme1390I	CCNGG	2 cut(s)	325, 534
BmiI	GGNNCC	2 cut(s)	266, 362
BmrFI	CCNGG	2 cut(s)	325, 534
BmsI	GCATC	2 cut(s)	111, 244
Bpu10I	CCTNAGC	1 cut(s)	445
Bpu14I	TTCGAA	1 cut(s)	299
BpuEI	CTTGAG	1 cut(s)	454
BpuMI	CCSGG	1 cut(s)	325
BsaHI	GRCGYC	2 cut(s)	409, 433
BsaJI	CCNNGG	1 cut(s)	532
BsaXI	ACNNNNNCTCC	4 cut(s)	189, 219, 530, 560
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 481
Bse118I	RCCGGY	1 cut(s)	273
Bse1I	ACTGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	1 cut(s)	532
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	2 cut(s)	280, 481
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	2 cut(s)	116, 459
BseNI	ACTGG	1 cut(s)	103
BseXI	GCAGC	5 cut(s)	145, 148, 176, 317, 366
BshNI	GGYRCC	1 cut(s)	264
BsiHKAI	GWGCWC	1 cut(s)	446
BsiSI	CCGG	3 cut(s)	274, 324, 475
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	2 cut(s)	280, 481
BsmAI	GTCTC	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	340
Bsp119I	TTCGAA	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp143I	GATC	3 cut(s)	179, 522, 561
BspACI	CCGC	6 cut(s)	105, 227, 237, 271, 337, 436
BspCNI	CTCAG	2 cut(s)	117, 458
BspLI	GGNNCC	2 cut(s)	266, 362
BspMAI	CTGCAG	1 cut(s)	166
BspMI	ACCTGC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	187
BspT104I	TTCGAA	1 cut(s)	299
BspT107I	GGYRCC	1 cut(s)	264
BsrDI	GCAATG	1 cut(s)	356
BsrFI	RCCGGY	1 cut(s)	273
BsrI	ACTGG	1 cut(s)	103
BssAI	RCCGGY	1 cut(s)	273
BssECI	CCNNGG	1 cut(s)	532
BssMI	GATC	3 cut(s)	179, 522, 561
BssNI	GRCGYC	2 cut(s)	409, 433
Bst2UI	CCWGG	1 cut(s)	534
Bst6I	CTCTTC	3 cut(s)	87, 169, 547
BstACI	GRCGYC	2 cut(s)	409, 433
BstBI	TTCGAA	1 cut(s)	299
BstC8I	GCNNGC	2 cut(s)	275, 407
BstDEI	CTNAG	2 cut(s)	125, 445
BstEII	GGTNACC	1 cut(s)	488
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	3 cut(s)	182, 525, 564
BstMAI	GTCTC	1 cut(s)	89
BstMBI	GATC	3 cut(s)	179, 522, 561
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 441
BstNI	CCWGG	1 cut(s)	534
BstPI	GGTNACC	1 cut(s)	488
BstSCI	CCNGG	2 cut(s)	323, 532
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	5 cut(s)	145, 148, 176, 317, 366
BstX2I	RGATCY	1 cut(s)	179
BstYI	RGATCY	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	79
BveI	ACCTGC	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	275, 407
Cfr10I	RCCGGY	1 cut(s)	273
CseI	GACGC	2 cut(s)	398, 441
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	2 cut(s)	33, 365
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	2 cut(s)	125, 445
DpnI	GATC	3 cut(s)	181, 524, 563
DpnII	GATC	3 cut(s)	179, 522, 561
Eam1104I	CTCTTC	3 cut(s)	87, 169, 547
EarI	CTCTTC	3 cut(s)	87, 169, 547
Ecl136II	GAGCTC	1 cut(s)	444
Eco24I	GRGCYC	1 cut(s)	446
Eco32I	GATATC	1 cut(s)	518
Eco53kI	GAGCTC	1 cut(s)	444
Eco91I	GGTNACC	1 cut(s)	488
EcoICRI	GAGCTC	1 cut(s)	444
EcoO65I	GGTNACC	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	532
EcoRV	GATATC	1 cut(s)	518
EcoT38I	GRGCYC	1 cut(s)	446
FaeI	CATG	2 cut(s)	36, 368
FaiI	YATR	4 cut(s)	34, 279, 366, 459
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	2 cut(s)	32, 364
FauI	CCCGC	1 cut(s)	230
Fnu4HI	GCNGC	6 cut(s)	159, 162, 165, 306, 355, 436
FokI	GGATG	1 cut(s)	86
FriOI	GRGCYC	1 cut(s)	446
Fsp4HI	GCNGC	6 cut(s)	159, 162, 165, 306, 355, 436
FspBI	CTAG	1 cut(s)	513
GluI	GCNGC	6 cut(s)	159, 162, 165, 306, 355, 436
HapII	CCGG	3 cut(s)	274, 324, 475
HgaI	GACGC	2 cut(s)	398, 441
Hin1I	GRCGYC	2 cut(s)	409, 433
Hin1II	CATG	2 cut(s)	36, 368
HinfI	GANTC	1 cut(s)	328
HpaII	CCGG	3 cut(s)	274, 324, 475
HphI	GGTGA	1 cut(s)	482
Hpy188I	TCNGA	5 cut(s)	85, 510, 522, 561, 566
Hpy99I	CGWCG	1 cut(s)	435
HpyAV	CCTTC	3 cut(s)	14, 18, 295
HpyCH4V	TGCA	3 cut(s)	164, 257, 354
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 441
HpyF3I	CTNAG	2 cut(s)	125, 445
Hsp92I	GRCGYC	2 cut(s)	409, 433
Hsp92II	CATG	2 cut(s)	36, 368
KpnI	GGTACC	1 cut(s)	268
KroI	GCCGGC	1 cut(s)	273
KroNI	GCCGGC	1 cut(s)	275
Kzo9I	GATC	3 cut(s)	179, 522, 561
Lsp1109I	GCAGC	5 cut(s)	145, 148, 176, 317, 366
LweI	GCATC	2 cut(s)	111, 244
MaeI	CTAG	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	488
MalI	GATC	3 cut(s)	181, 524, 563
MboI	GATC	3 cut(s)	179, 522, 561
MboII	GAAGA	8 cut(s)	61, 101, 104, 146, 163, 183, 186, 534
MflI	RGATCY	1 cut(s)	179
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	2 cut(s)	13, 377
MlyI	GAGTC	1 cut(s)	322
MnlI	CCTC	9 cut(s)	55, 64, 107, 138, 170, 185, 191, 255, 556
MroNI	GCCGGC	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	541
MspA1I	CMGCKG	3 cut(s)	167, 308, 337
MspI	CCGG	3 cut(s)	274, 324, 475
MspR9I	CCNGG	2 cut(s)	325, 534
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	2 cut(s)	164, 441
NaeI	GCCGGC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	325
NdeII	GATC	3 cut(s)	179, 522, 561
NgoMIV	GCCGGC	1 cut(s)	273
NlaIII	CATG	2 cut(s)	36, 368
NlaIV	GGNNCC	2 cut(s)	266, 362
NmuCI	GTSAC	1 cut(s)	488
NspV	TTCGAA	1 cut(s)	299
PdiI	GCCGGC	1 cut(s)	275
PdmI	GAANNNNTTC	1 cut(s)	541
PfoI	TCCNGGA	1 cut(s)	323
PkrI	GCNGC	6 cut(s)	160, 163, 166, 307, 356, 437
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
Psp124BI	GAGCTC	1 cut(s)	446
Psp6I	CCWGG	1 cut(s)	532
PspEI	GGTNACC	1 cut(s)	488
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	2 cut(s)	266, 362
PstI	CTGCAG	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	179
PvuII	CAGCTG	2 cut(s)	167, 308
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacI	GAGCTC	1 cut(s)	446
SatI	GCNGC	6 cut(s)	159, 162, 165, 306, 355, 436
Sau3AI	GATC	3 cut(s)	179, 522, 561
SchI	GAGTC	1 cut(s)	322
ScrFI	CCNGG	2 cut(s)	325, 534
SduI	GDGCHC	1 cut(s)	446
SfaNI	GCATC	2 cut(s)	111, 244
SfcI	CTRYAG	1 cut(s)	162
SfuI	TTCGAA	1 cut(s)	299
SmlI	CTYRAG	1 cut(s)	469
SmoI	CTYRAG	1 cut(s)	469
Sse9I	AATT	2 cut(s)	13, 377
SsiI	CCGC	6 cut(s)	105, 227, 237, 271, 337, 436
SspMI	CTAG	1 cut(s)	513
SstI	GAGCTC	1 cut(s)	446
StyD4I	CCNGG	2 cut(s)	323, 532
TaqI	TCGA	4 cut(s)	47, 299, 331, 375
TasI	AATT	2 cut(s)	13, 377
TauI	GCSGC	1 cut(s)	438
TseFI	GTSAC	1 cut(s)	488
TseI	GCWGC	5 cut(s)	158, 161, 164, 305, 354
Tsp45I	GTSAC	1 cut(s)	488
TspDTI	ATGAA	2 cut(s)	284, 399
XapI	RAATTY	2 cut(s)	13, 377
XmnI	GAANNNNTTC	1 cut(s)	541
XspI	CTAG	1 cut(s)	513

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.