AT1G53160

Squamosa promoter-binding-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002905
Physical Location & Seq
Forward (+)
19806263 .. 19807705
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G53160.2

Sequence Viewer

Length: 525 bp
ATGGAGGGTAAGAGATCACAAGGACAAGGTTACATGAAAAAGAAGTCTTACCTTGTGGAAGAAGATATGGAGACTGATACGGATGAAGAAGAGGAAGTAGGTAGGGATAGAGTTAGAGGGTCTAGAGGTAGCATCAATCGTGGTGGCTCGTTGCGGCTTTGCCAAGTAGATAGATGCACAGCTGATATGAAAGAGGCAAAACTGTATCACCGGAGACACAAAGTGTGTGAAGTTCATGCAAAGGCATCTTCTGTCTTTCTCTCAGGACTTAACCAACGCTTTTGTCAACAATGCAGTAGGTTTCATGACCTCCAAGAGTTTGATGAAGCTAAGAGAAGTTGCAGGAGGCGCTTAGCTGGACACAATGAGCGAAGAAGGAAGAGCTCTGGTGAGAGTACTTATGGAGAAGGATCAGGTCGGAGAGGAATCAATGGTCAGGTGGTGATGCAGAATCAAGAAAGATCAAGGGTAGAGATGACACTTCCTATGCCAAACTCATCATTCAAGCGACCACAGATTAGATAG

Protein Analysis

174

Amino Acids

20.12

Weight (kDa)

9.69

Isoelectric Point (pI)

69.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP PF03110 54 - 127 1.3e-32 SBP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 154
AclWI GGATC 1 cut(s) 418
AdeI CACNNNGTG 1 cut(s) 223
AfaI GTAC 1 cut(s) 397
AgsI TTSAA 1 cut(s) 505
AluBI AGCT 4 cut(s) 182, 329, 356, 384
AluI AGCT 4 cut(s) 182, 329, 356, 384
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 2 cut(s) 65, 208
AlwI GGATC 1 cut(s) 418
AspLEI GCGC 1 cut(s) 351
AsuHPI GGTGA 3 cut(s) 200, 401, 454
BanII GRGCYC 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 386
BcoDI GTCTC 2 cut(s) 65, 208
BfaI CTAG 1 cut(s) 123
BfoI RGCGCY 1 cut(s) 352
BisI GCNGC 1 cut(s) 155
BlpI GCTNAGC 1 cut(s) 352
BlsI GCNGC 1 cut(s) 156
BmcAI AGTACT 1 cut(s) 397
BmsI GCATC 4 cut(s) 141, 164, 254, 435
Bpu1102I GCTNAGC 1 cut(s) 352
BsaWI WCCGGW 1 cut(s) 210
BseGI GGATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 276
BsiHKAI GWGCWC 1 cut(s) 386
BsiSI CCGG 1 cut(s) 211
BsmAI GTCTC 2 cut(s) 65, 208
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 3 cut(s) 14, 410, 461
Bsp1720I GCTNAGC 1 cut(s) 352
BspACI CCGC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 275
BspHI TCATGA 1 cut(s) 304
BspPI GGATC 1 cut(s) 418
BspQI GCTCTTC 1 cut(s) 374
BssMI GATC 3 cut(s) 14, 410, 461
Bst4CI ACNGT 1 cut(s) 204
Bst6I CTCTTC 2 cut(s) 84, 374
BstDEI CTNAG 3 cut(s) 262, 330, 352
BstF5I GGATG 1 cut(s) 88
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 3 cut(s) 17, 413, 464
BstMAI GTCTC 2 cut(s) 65, 208
BstMBI GATC 3 cut(s) 14, 410, 461
BstMWI GCNNNNNNNGC 1 cut(s) 348
BtsCI GGATG 1 cut(s) 88
CciI TCATGA 1 cut(s) 304
CfoI GCGC 1 cut(s) 351
Csp6I GTAC 1 cut(s) 396
CspCI CAANNNNNGTGG 2 cut(s) 124, 159
CviAII CATG 3 cut(s) 34, 236, 305
CviJI RGCY 6 cut(s) 147, 157, 182, 329, 356, 384
CviKI_1 RGCY 6 cut(s) 147, 157, 182, 329, 356, 384
CviQI GTAC 1 cut(s) 396
DdeI CTNAG 3 cut(s) 262, 330, 352
DpnI GATC 3 cut(s) 16, 412, 463
DpnII GATC 3 cut(s) 14, 410, 461
DraIII CACNNNGTG 1 cut(s) 223
Eam1104I CTCTTC 2 cut(s) 84, 374
EarI CTCTTC 2 cut(s) 84, 374
Ecl136II GAGCTC 1 cut(s) 384
Eco24I GRGCYC 1 cut(s) 386
Eco53kI GAGCTC 1 cut(s) 384
EcoICRI GAGCTC 1 cut(s) 384
EcoT38I GRGCYC 1 cut(s) 386
FaeI CATG 3 cut(s) 37, 239, 308
FaiI YATR 7 cut(s) 35, 68, 188, 237, 306, 402, 488
FatI CATG 3 cut(s) 33, 235, 304
Fnu4HI GCNGC 1 cut(s) 155
FokI GGATG 1 cut(s) 95
FriOI GRGCYC 1 cut(s) 386
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 1 cut(s) 123
GlaI GCGC 1 cut(s) 350
GluI GCNGC 1 cut(s) 155
HaeII RGCGCY 1 cut(s) 352
HapII CCGG 1 cut(s) 211
HhaI GCGC 1 cut(s) 351
Hin1II CATG 3 cut(s) 37, 239, 308
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HincII GTYRAC 1 cut(s) 287
HindII GTYRAC 1 cut(s) 287
HinfI GANTC 2 cut(s) 426, 451
HpaII CCGG 1 cut(s) 211
HphI GGTGA 3 cut(s) 200, 401, 454
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 1 cut(s) 420
Hpy188III TCNNGA 4 cut(s) 123, 264, 305, 455
Hpy8I GTNNAC 1 cut(s) 287
HpyAV CCTTC 2 cut(s) 369, 401
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4V TGCA 5 cut(s) 177, 239, 294, 342, 448
HpyF10VI GCNNNNNNNGC 1 cut(s) 348
HpyF3I CTNAG 3 cut(s) 262, 330, 352
Hsp92II CATG 3 cut(s) 37, 239, 308
HspAI GCGC 1 cut(s) 349
Kzo9I GATC 3 cut(s) 14, 410, 461
LguI GCTCTTC 1 cut(s) 374
LpnPI CCDG 7 cut(s) 224, 249, 328, 342, 372, 399, 422
LweI GCATC 4 cut(s) 141, 164, 254, 435
MaeI CTAG 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 29
MalI GATC 3 cut(s) 16, 412, 463
MboI GATC 3 cut(s) 14, 410, 461
MboII GAAGA 7 cut(s) 71, 74, 98, 101, 240, 384, 391
MhlI GDGCHC 1 cut(s) 386
MmeI TCCRAC 1 cut(s) 398
MnlI CCTC 7 cut(s) 85, 110, 119, 187, 320, 339, 416
MseI TTAA 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 182
MspI CCGG 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 348
NdeII GATC 3 cut(s) 14, 410, 461
NlaIII CATG 3 cut(s) 37, 239, 308
PagI TCATGA 1 cut(s) 304
PciSI GCTCTTC 1 cut(s) 374
PfeI GAWTC 2 cut(s) 426, 451
PkrI GCNGC 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 386
PvuII CAGCTG 1 cut(s) 182
RsaI GTAC 1 cut(s) 397
RsaNI GTAC 1 cut(s) 396
SacI GAGCTC 1 cut(s) 386
SapI GCTCTTC 1 cut(s) 374
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 3 cut(s) 14, 410, 461
ScaI AGTACT 1 cut(s) 397
SduI GDGCHC 1 cut(s) 386
SfaNI GCATC 4 cut(s) 141, 164, 254, 435
SsiI CCGC 1 cut(s) 154
SspMI CTAG 1 cut(s) 123
SstI GAGCTC 1 cut(s) 386
TaaI ACNGT 1 cut(s) 204
TatI WGTACW 1 cut(s) 395
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 2 cut(s) 426, 451
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TspDTI ATGAA 6 cut(s) 50, 99, 203, 224, 293, 339
TspGWI ACGGA 1 cut(s) 95
XbaI TCTAGA 1 cut(s) 122
XspI CTAG 1 cut(s) 123
ZrmI AGTACT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.