Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Forward (+)

14747483 .. 14749256

Gene Structure 1774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G139800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAGGTCATGAGTAAAATTAACCTAAACAAGCAGCTGAGGATGGAGAAGCCCCATGTGGTGGTCAAGGAGGAGGAAGAGGAAGATGAAGAATTTGATCAGCATCAGCAACTGGAAGATCATGATAAGAAGAAGAAAGGAATTGTGGGTGGAAGTGGCTCTGTGAAAAGATCAGGCACAAGTGGAGGTGGGACGAGATGCTGTCAGGCTGACAGGTGCCCAGCTGATCTGAGTGATGCAAAGCAGTATCATAGAAGGCATAAGGTTTGTGACCTTCATTCTAAGGCTCAGGTTGTGCTTGTTTCTGGGCTGAGGCAAAGGTTTTGCCAGCAATGCAGCAGATTTCATGAGCTCCCAGAATTTGATGACACCAAACGGAGTTGTCGTAGGCGTCTGGCCGGACACAATGAACGCCGAAGGAAGAATTCAGTCGAGTCTAATGCAGAAGGCCCGAACCGCAATGGTACAGGCACTCCGTTAAAGGATGTATGTGGCCAGGGTGATAATAGTGGAAGAATTCGGATAACCATTCAAGGAAATTCCCCCTACAAGCATTTCCAGATTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

190

Amino Acids

21.52

Weight (kDa)

9.26

Isoelectric Point (pI)

61.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	216
AccB7I	CCANNNNNTGG	1 cut(s)	61
AciI	CCGC	1 cut(s)	457
AcoI	YGGCCR	2 cut(s)	396, 493
AcsI	RAATTY	5 cut(s)	92, 359, 424, 516, 538
AcyI	GRCGYC	1 cut(s)	391
AfaI	GTAC	1 cut(s)	466
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	533
AjnI	CCWGG	1 cut(s)	495
AluBI	AGCT	3 cut(s)	37, 224, 352
AluI	AGCT	3 cut(s)	37, 224, 352
Alw21I	GWGCWC	1 cut(s)	354
AlwNI	CAGNNNCTG	1 cut(s)	112
AoxI	GGCC	3 cut(s)	396, 448, 493
ApeKI	GCWGC	2 cut(s)	34, 336
ApoI	RAATTY	5 cut(s)	92, 359, 424, 516, 538
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	1 cut(s)	512
BaeGI	GKGCMC	1 cut(s)	221
BalI	TGGCCA	1 cut(s)	495
BanI	GGYRCC	1 cut(s)	216
BanII	GRGCYC	1 cut(s)	354
Bbv12I	GWGCWC	1 cut(s)	354
BbvCI	CCTCAGC	2 cut(s)	38, 311
BbvI	GCAGC	2 cut(s)	46, 348
BccI	CCATC	1 cut(s)	37
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	1 cut(s)	497
BclI	TGATCA	1 cut(s)	97
BisI	GCNGC	2 cut(s)	35, 337
BlsI	GCNGC	2 cut(s)	36, 338
Bme1390I	CCNGG	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	449
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	497
BmsI	GCATC	3 cut(s)	112, 188, 226
Bpu10I	CCTNAGC	3 cut(s)	38, 288, 311
BsaBI	GATNNNNATC	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	391
BsaJI	CCNNGG	1 cut(s)	496
BsaXI	ACNNNNNCTCC	4 cut(s)	370, 400, 457, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse1I	ACTGG	1 cut(s)	117
Bse3DI	GCAATG	2 cut(s)	338, 466
Bse8I	GATNNNNATC	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	2 cut(s)	48, 490
BseJI	GATNNNNATC	1 cut(s)	102
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	2 cut(s)	338, 466
BseMII	CTCAG	4 cut(s)	29, 221, 302, 302
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	2 cut(s)	46, 348
BseYI	CCCAGC	1 cut(s)	220
BshFI	GGCC	3 cut(s)	398, 450, 495
BshNI	GGYRCC	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	3 cut(s)	398, 450, 495
Bsp1286I	GDGCHC	2 cut(s)	221, 354
Bsp143I	GATC	4 cut(s)	97, 118, 170, 226
BspACI	CCGC	1 cut(s)	457
BspANI	GGCC	3 cut(s)	398, 450, 495
BspCNI	CTCAG	4 cut(s)	30, 222, 301, 303
BspHI	TCATGA	3 cut(s)	9, 121, 346
BspLI	GGNNCC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	216
BsrDI	GCAATG	2 cut(s)	338, 466
BsrI	ACTGG	1 cut(s)	117
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	4 cut(s)	97, 118, 170, 226
BssNI	GRCGYC	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	497
Bst6I	CTCTTC	1 cut(s)	72
BstACI	GRCGYC	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	329
BstDEI	CTNAG	5 cut(s)	38, 230, 282, 288, 311
BstF5I	GGATG	2 cut(s)	48, 490
BstKTI	GATC	4 cut(s)	100, 121, 173, 229
BstMBI	GATC	4 cut(s)	97, 118, 170, 226
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 456
BstNI	CCWGG	1 cut(s)	497
BstSCI	CCNGG	1 cut(s)	495
BstSLI	GKGCMC	1 cut(s)	221
BstV1I	GCAGC	2 cut(s)	46, 348
BsuRI	GGCC	3 cut(s)	398, 450, 495
BtsCI	GGATG	2 cut(s)	48, 490
Cac8I	GCNNGC	1 cut(s)	329
CaiI	CAGNNNCTG	1 cut(s)	112
CciI	TCATGA	3 cut(s)	9, 121, 346
Cfr13I	GGNCC	1 cut(s)	449
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	465
CviAII	CATG	4 cut(s)	10, 56, 122, 347
CviQI	GTAC	1 cut(s)	465
DdeI	CTNAG	5 cut(s)	38, 230, 282, 288, 311
DpnI	GATC	4 cut(s)	99, 120, 172, 228
DpnII	GATC	4 cut(s)	97, 118, 170, 226
EaeI	YGGCCR	2 cut(s)	396, 493
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
Ecl136II	GAGCTC	1 cut(s)	352
Eco24I	GRGCYC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	352
EcoRI	GAATTC	2 cut(s)	424, 516
EcoRII	CCWGG	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	354
FaeI	CATG	4 cut(s)	13, 59, 125, 350
FaiI	YATR	7 cut(s)	11, 57, 123, 252, 261, 348, 490
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	4 cut(s)	9, 55, 121, 346
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	2 cut(s)	35, 337
FokI	GGATG	2 cut(s)	55, 497
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	35, 337
GluI	GCNGC	2 cut(s)	35, 337
GsaI	CCCAGC	1 cut(s)	224
HaeIII	GGCC	3 cut(s)	398, 450, 495
HapII	CCGG	1 cut(s)	399
HgaI	GACGC	1 cut(s)	380
Hin1I	GRCGYC	1 cut(s)	391
Hin1II	CATG	4 cut(s)	13, 59, 125, 350
HinfI	GANTC	1 cut(s)	434
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	1 cut(s)	512
Hpy188I	TCNGA	2 cut(s)	231, 522
Hpy188III	TCNNGA	4 cut(s)	10, 122, 347, 559
HpyAV	CCTTC	4 cut(s)	249, 284, 411, 440
HpyCH4V	TGCA	3 cut(s)	239, 336, 443
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 456
HpyF3I	CTNAG	5 cut(s)	38, 230, 282, 288, 311
Hsp92I	GRCGYC	1 cut(s)	391
Hsp92II	CATG	4 cut(s)	13, 59, 125, 350
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	4 cut(s)	97, 118, 170, 226
LmnI	GCTCC	1 cut(s)	357
Lsp1109I	GCAGC	2 cut(s)	46, 348
LweI	GCATC	3 cut(s)	112, 188, 226
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	4 cut(s)	99, 120, 172, 228
MboI	GATC	4 cut(s)	97, 118, 170, 226
MboII	GAAGA	8 cut(s)	89, 95, 101, 128, 142, 145, 433, 525
MhlI	GDGCHC	2 cut(s)	221, 354
MlsI	TGGCCA	1 cut(s)	495
MluCI	AATT	7 cut(s)	18, 92, 141, 359, 424, 516, 538
MluNI	TGGCCA	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	443
MnlI	CCTC	6 cut(s)	33, 64, 67, 73, 179, 306
Mox20I	TGGCCA	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	495
MseI	TTAA	2 cut(s)	21, 479
Msp20I	TGGCCA	1 cut(s)	495
MspA1I	CMGCKG	2 cut(s)	37, 224
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	1 cut(s)	497
MvaI	CCWGG	1 cut(s)	497
MwoI	GCNNNNNNNGC	2 cut(s)	333, 456
NdeII	GATC	4 cut(s)	97, 118, 170, 226
NlaIII	CATG	4 cut(s)	13, 59, 125, 350
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	269
PagI	TCATGA	3 cut(s)	9, 121, 346
PcsI	WCGNNNNNNNCGW	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	61
PkrI	GCNGC	2 cut(s)	36, 338
PleI	GAGTC	1 cut(s)	442
PpsI	GAGTC	1 cut(s)	442
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	495
PspFI	CCCAGC	1 cut(s)	220
PspGI	CCWGG	1 cut(s)	495
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	449
PstNI	CAGNNNCTG	1 cut(s)	112
PvuII	CAGCTG	2 cut(s)	37, 224
RsaI	GTAC	1 cut(s)	466
RsaNI	GTAC	1 cut(s)	465
SacI	GAGCTC	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	21, 479
SatI	GCNGC	2 cut(s)	35, 337
Sau3AI	GATC	4 cut(s)	97, 118, 170, 226
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	1 cut(s)	443
ScrFI	CCNGG	1 cut(s)	497
SduI	GDGCHC	2 cut(s)	221, 354
SfaNI	GCATC	3 cut(s)	112, 188, 226
Sse9I	AATT	7 cut(s)	18, 92, 141, 359, 424, 516, 538
SsiI	CCGC	1 cut(s)	457
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	1 cut(s)	495
TaqI	TCGA	1 cut(s)	432
TasI	AATT	7 cut(s)	18, 92, 141, 359, 424, 516, 538
Tru1I	TTAA	2 cut(s)	21, 479
Tru9I	TTAA	2 cut(s)	21, 479
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	2 cut(s)	34, 336
Tsp45I	GTSAC	1 cut(s)	269
TspDTI	ATGAA	4 cut(s)	102, 266, 335, 423
TspGWI	ACGGA	2 cut(s)	391, 465
Van91I	CCANNNNNTGG	1 cut(s)	61
XapI	RAATTY	5 cut(s)	92, 359, 424, 516, 538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.