Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002905

Physical Location & Seq

Genomic Coordinates Reverse (-)

5140365 .. 5142323

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G15270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAGGGTCAGAGAACACAACGCCGGGGTTACTTGAAAGACAAGGCTACAGTCTCCAACCTTGTTGAAGAAGAAATGGAGAATGGCATGGATGGAGAAGAGGAGGATGGAGGAGACGAAGACAAAAGGAAGAAGGTGATGGAAAGAGTTAGAGGTCCTAGCACTGACCGTGTTCCATCGCGACTGTGCCAGGTCGATAGGTGCACTGTTAATTTGACTGAGGCCAAGCAGTATTACCGCAGACACAGAGTATGTGAAGTACATGCAAAGGCATCTGCTGCGACTGTTGCAGGGGTCAGGCAACGCTTTTGTCAACAATGCAGCAGGTTTCATGAGCTACCAGAGTTTGATGAAGCTAAAAGAAGCTGCAGGAGGCGCTTAGCTGGACACAATGAGAGGAGGAGGAAGATCTCTGGTGACAGTTTTGGAGAAGGGTCAGGCCGGAGAGGGTTTAGCGGTCAACTGATCCAGACTCAAGAAAGAAACAGGGTAGACAGGAAACTTCCTATGACCAACTCATCATTCAAGCGACCACAGATCAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

181

Amino Acids

20.99

Weight (kDa)

9.82

Isoelectric Point (pI)

60.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SBP	PF03110	63 - 136	1.6e-32	SBP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002905)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53160 AT1G53160 AT1G53160 AT3G15270
fragaria_vesca	FvH4_3g19650 FvH4_6g26530 FvH4_6g26530
malus_domestica	MD03G1230600.v1.1 MD09G1244200.v1.1 MD11G1251800.v1.1 MD17G1236000.v1.1
prunus_persica	Prupe.3G139800_v2.0.a1 Prupe.4G177200_v2.0.a1
pyrus_communis	pycom03g17830 pycom09g16260 pycom11g22330 pycom17g23910
rosa_chinensis	RchiOBHm_Chr2g0127621 RchiOBHm_Chr5g0032861
rosa_laevigata	RLG00000018949 RLG00000033434
rosa_multiflora	Rmu_co8505681.1_g000001 Rmu_sc0000986.1_g000032 Rmu_ssc0000200.1_g000011
rosa_roxburghii	Rroxscaffold_1G00047180 Rroxscaffold_2G00116580
rosa_rugosa	Rorug02G0272400 Rorug05G0134100
rosa_samantha	Rh2AG324400 Rh2BG333700 Rh2CG311900 Rh2DG351900 Rh5AG227100 Rh5BG228500 Rh5CG256200 Rh5DG233300
rosa_wichuraiana	Rw2G026340 Rw5G020820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	315
AccI	GTMKAC	1 cut(s)	492
AccII	CGCG	1 cut(s)	181
AciI	CCGC	2 cut(s)	238, 456
AclWI	GGATC	1 cut(s)	460
AfaI	GTAC	1 cut(s)	261
AgsI	TTSAA	3 cut(s)	37, 68, 526
AjnI	CCWGG	1 cut(s)	189
AjuI	GAANNNNNNNTTGG	2 cut(s)	506, 538
AluBI	AGCT	4 cut(s)	337, 356, 366, 383
AluI	AGCT	4 cut(s)	337, 356, 366, 383
Alw21I	GWGCWC	1 cut(s)	206
Alw26I	GTCTC	2 cut(s)	58, 108
Alw44I	GTGCAC	1 cut(s)	202
AlwI	GGATC	1 cut(s)	460
AoxI	GGCC	2 cut(s)	222, 439
ApaLI	GTGCAC	1 cut(s)	202
ApeKI	GCWGC	3 cut(s)	278, 321, 366
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	155
AsuC2I	CCSGG	1 cut(s)	26
AsuHPI	GGTGA	2 cut(s)	148, 428
AvaII	GGWCC	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	126
Bbv12I	GWGCWC	1 cut(s)	206
BbvI	GCAGC	3 cut(s)	265, 333, 353
BccI	CCATC	4 cut(s)	86, 101, 133, 184
BciT130I	CCWGG	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	26
BcoDI	GTCTC	2 cut(s)	58, 108
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	2 cut(s)	48, 367
BfoI	RGCGCY	1 cut(s)	379
BfuAI	ACCTGC	1 cut(s)	315
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	3 cut(s)	279, 322, 367
BlpI	GCTNAGC	1 cut(s)	379
BlsI	GCNGC	3 cut(s)	280, 323, 368
Bme1390I	CCNGG	2 cut(s)	26, 191
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmrFI	CCNGG	2 cut(s)	26, 191
BmsI	GCATC	1 cut(s)	281
BpiI	GAAGAC	1 cut(s)	126
Bpu1102I	GCTNAGC	1 cut(s)	379
BpuEI	CTTGAG	1 cut(s)	459
BpuMI	CCSGG	1 cut(s)	26
BsaJI	CCNNGG	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	25
BseGI	GGATG	2 cut(s)	97, 112
BseMII	CTCAG	1 cut(s)	210
BseRI	GAGGAG	4 cut(s)	116, 126, 412, 415
BseSI	GKGCMC	1 cut(s)	206
BseXI	GCAGC	3 cut(s)	265, 333, 353
Bsh1236I	CGCG	1 cut(s)	181
BshFI	GGCC	2 cut(s)	224, 441
BsiHKAI	GWGCWC	1 cut(s)	206
BsiSI	CCGG	2 cut(s)	25, 442
BsmAI	GTCTC	2 cut(s)	58, 108
BsmBI	CGTCTC	1 cut(s)	108
BsnI	GGCC	2 cut(s)	224, 441
Bsp1286I	GDGCHC	1 cut(s)	206
Bsp143I	GATC	3 cut(s)	408, 465, 537
Bsp1720I	GCTNAGC	1 cut(s)	379
Bsp68I	TCGCGA	1 cut(s)	181
BspACI	CCGC	2 cut(s)	238, 456
BspANI	GGCC	2 cut(s)	224, 441
BspCNI	CTCAG	1 cut(s)	211
BspFNI	CGCG	1 cut(s)	181
BspHI	TCATGA	1 cut(s)	331
BspMAI	CTGCAG	1 cut(s)	371
BspMI	ACCTGC	1 cut(s)	315
BspPI	GGATC	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	25
BssMI	GATC	3 cut(s)	408, 465, 537
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	6 cut(s)	52, 170, 186, 208, 286, 422
Bst6I	CTCTTC	1 cut(s)	93
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstDEI	CTNAG	2 cut(s)	219, 379
BstF5I	GGATG	2 cut(s)	97, 112
BstFNI	CGCG	1 cut(s)	181
BstH2I	RGCGCY	1 cut(s)	379
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	3 cut(s)	411, 468, 540
BstMAI	GTCTC	2 cut(s)	58, 108
BstMBI	GATC	3 cut(s)	408, 465, 537
BstMWI	GCNNNNNNNGC	3 cut(s)	278, 287, 375
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	24, 189
BstSFI	CTRYAG	2 cut(s)	48, 367
BstSLI	GKGCMC	1 cut(s)	206
BstUI	CGCG	1 cut(s)	181
BstV1I	GCAGC	3 cut(s)	265, 333, 353
BstV2I	GAAGAC	1 cut(s)	126
BstX2I	RGATCY	1 cut(s)	408
BstYI	RGATCY	1 cut(s)	408
BsuRI	GGCC	2 cut(s)	224, 441
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	97, 112
BtsIMutI	CAGTG	2 cut(s)	162, 204
BtuMI	TCGCGA	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	315
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	3 cut(s)	88, 263, 332
CviJI	RGCY	7 cut(s)	47, 224, 337, 356, 366, 383, 441
CviKI_1	RGCY	7 cut(s)	47, 224, 337, 356, 366, 383, 441
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	2 cut(s)	219, 379
DpnI	GATC	3 cut(s)	410, 467, 539
DpnII	GATC	3 cut(s)	408, 465, 537
Eam1104I	CTCTTC	1 cut(s)	93
EarI	CTCTTC	1 cut(s)	93
Eco47I	GGWCC	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	189
Esp3I	CGTCTC	1 cut(s)	108
FaeI	CATG	3 cut(s)	91, 266, 335
FaiI	YATR	5 cut(s)	89, 253, 264, 333, 509
FatI	CATG	3 cut(s)	87, 262, 331
FblI	GTMKAC	1 cut(s)	492
Fnu4HI	GCNGC	3 cut(s)	279, 322, 367
FokI	GGATG	2 cut(s)	104, 119
Fsp4HI	GCNGC	3 cut(s)	279, 322, 367
FspBI	CTAG	1 cut(s)	159
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	3 cut(s)	279, 322, 367
HaeII	RGCGCY	1 cut(s)	379
HaeIII	GGCC	2 cut(s)	224, 441
HapII	CCGG	2 cut(s)	25, 442
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	3 cut(s)	91, 266, 335
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HincII	GTYRAC	2 cut(s)	314, 461
HindII	GTYRAC	2 cut(s)	314, 461
HinfI	GANTC	1 cut(s)	472
HpaII	CCGG	2 cut(s)	25, 442
HphI	GGTGA	2 cut(s)	148, 428
Hpy166II	GTNNAC	4 cut(s)	204, 314, 461, 493
Hpy188I	TCNGA	2 cut(s)	12, 542
Hpy188III	TCNNGA	4 cut(s)	180, 332, 469, 476
Hpy8I	GTNNAC	4 cut(s)	204, 314, 461, 493
HpyAV	CCTTC	2 cut(s)	127, 425
HpyCH4III	ACNGT	6 cut(s)	52, 170, 186, 208, 286, 422
HpyCH4V	TGCA	5 cut(s)	204, 266, 290, 321, 369
HpyF10VI	GCNNNNNNNGC	3 cut(s)	278, 287, 375
HpyF3I	CTNAG	2 cut(s)	219, 379
Hsp92II	CATG	3 cut(s)	91, 266, 335
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	408, 465, 537
Lsp1109I	GCAGC	3 cut(s)	265, 333, 353
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	1 cut(s)	159
MaeIII	GTNAC	2 cut(s)	29, 416
MalI	GATC	3 cut(s)	410, 467, 539
MboI	GATC	3 cut(s)	408, 465, 537
MboII	GAAGA	6 cut(s)	80, 83, 110, 131, 142, 418
MflI	RGATCY	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	206
MluCI	AATT	1 cut(s)	211
MlyI	GAGTC	1 cut(s)	466
MmeI	TCCRAC	1 cut(s)	81
MseI	TTAA	1 cut(s)	210
MspI	CCGG	2 cut(s)	25, 442
MspR9I	CCNGG	2 cut(s)	26, 191
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	181
MwoI	GCNNNNNNNGC	3 cut(s)	278, 287, 375
NciI	CCSGG	1 cut(s)	26
NdeII	GATC	3 cut(s)	408, 465, 537
NlaIII	CATG	3 cut(s)	91, 266, 335
NmuCI	GTSAC	1 cut(s)	416
NruI	TCGCGA	1 cut(s)	181
NspI	RCATGY	1 cut(s)	266
PagI	TCATGA	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	280, 323, 368
PleI	GAGTC	1 cut(s)	466
PpsI	GAGTC	1 cut(s)	466
PpuMI	RGGWCCY	1 cut(s)	155
Psp5II	RGGWCCY	1 cut(s)	155
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	155
PspPPI	RGGWCCY	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	408
RruI	TCGCGA	1 cut(s)	181
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	3 cut(s)	279, 322, 367
Sau3AI	GATC	3 cut(s)	408, 465, 537
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	466
ScrFI	CCNGG	2 cut(s)	26, 191
SduI	GDGCHC	1 cut(s)	206
SfaNI	GCATC	1 cut(s)	281
SfcI	CTRYAG	2 cut(s)	48, 367
SinI	GGWCC	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	474
SmoI	CTYRAG	1 cut(s)	474
Sse9I	AATT	1 cut(s)	211
SsiI	CCGC	2 cut(s)	238, 456
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	2 cut(s)	24, 189
TaaI	ACNGT	6 cut(s)	52, 170, 186, 208, 286, 422
TaqI	TCGA	1 cut(s)	195
TasI	AATT	1 cut(s)	211
TatI	WGTACW	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	169, 211
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	3 cut(s)	278, 321, 366
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	2 cut(s)	320, 366
TspRI	CASTG	2 cut(s)	169, 211
VneI	GTGCAC	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	155
XceI	RCATGY	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	492
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.