Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001946

Physical Location & Seq

Genomic Coordinates Reverse (-)

29048306 .. 29051819

Gene Structure 3514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0272400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGTCGGTGACAGCAGGTGTTAGTGATACTGTGATTGCGATTAGGGATAAGCTGAGAGGTAAAATTGGACAAACTAAAGTTAAAAGGTATTGGCCCGGAAAAGCTCCCGAGTGGGGAGATGATGCGGATGAAGATGGCGATATTAGGATGTCCGCGGCTGCCTCCCTGGAGAAAGCCTTCCCCACTCAGGATTATTCGGATGTTGGAAGGAAAGATGATCCTAGGCTGCGTCGTTTGGCTGAGAGCAGGATAGATAATCGCGAGGATGTTAGGGCTGATCATAGGCGTATCCGGCAAGCTGAAATTGTTTCAACAATTGAAGAGGAAGCTAAGAGGCAGGAAGGGATAGATGCGGAAGAAGAGGATCCTGATGCTTTAGAGGAAAGGAGGAGAAGGATTAAGGAAAGGTTGCGTCAGAGGGAGCAAGAAGAAGCTCCACTCCTCCCCTCGGAAGATGAGGAAGAAGATAAGGAAGAGGAGGAGGAAGAGGAATCAGAGTATTCAACTGACTCAGAAGATGAGCATGGTGGCATGATGATGCTGAAGCCAGTCTTTGTTCCGAAGGCTGAGAGAGATACAATTGCTGAACGTGAGCGAATTGAGGCAGAAGAGTTGGCCCTCGAGGAAGCAAGGAAGAAAAAATTGGAGGAGAGGAAGAGAGAGACGAAGCAGATTGTGGTTGAGGAAATCCGAAAGGATGAAGAGATTCAGAAGGGTATGGAACAGGACGCTAACATTGCTGATATTGATACTGATGATGAACTTAATGAGGCAGAGGAGTATGAAGCTTGGAAGGCAAGAGAGATTGCCAGGATCAAGAGGGATAGAGAGGAGAGGGAAGCTATGTTGAAGGAAAAGGAAGAGATAGAAAGAGTAAGAAATATGACAGAGGAAGAGAGGAGGGAATGGGAGAGGAAGAATCCTAAACCTGCACCTCGACCAAAGCAAAAGTGGAGGTTCATGCAGAAATATTACCACAAAGGTGCTTTCTTCCAATCAGATGCAGATGACCACGCTGCAACTGTTGGAACAGATGGAATTTTCACTCGTGATTTCTCTGCTCCAACTGGAGAAGATAAGATGGATAAAACTATATTGCCGAAGGTCATGCAAGTCAAGCATTTTGGTCGTAGTGGAAGGACAAAATGGACCCACCTTGTCAATGAGGATACTACTGACTGGAACAATCCGTGGACCTACAATGATCCTCTTCGGGCAAAGTATAATGCTAAAATGGCTGGAATGAATGCACCTATAGAAAAACCCAGAGGAAGCAAGAAATTGAAGGATCAGAAGTATTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010321 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0048580 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP

Protein Analysis

434

Amino Acids

51.09

Weight (kDa)

5.05

Isoelectric Point (pI)

60.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFAP1	PF06991	170 - 391	2.6e-77	Microfibril-associated/Pre-mRNA processing

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27470 AT3G27470 AT3G27470 AT3G27470 AT3G27470
fragaria_vesca	FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770
malus_domestica	MD09G1022800.v1.1 MD17G1022000.v1.1
prunus_persica	Prupe.3G294100_v2.0.a1 Prupe.3G294100_v2.0.a1 Prupe.3G294100_v2.0.a1 Prupe.3G294100_v2.0.a1
pyrus_communis	pycom111g01910 pycom17g01910
rosa_chinensis	RchiOBHm_Chr2g0127631 RchiOBHm_Chr2g0173331
rosa_laevigata	RLG00000018948 RLG00000022179
rosa_multiflora	Rmu_co8312885.1_g000001 Rmu_sc0010961.1_g000004 Rmu_sc0033776.1_g000002 Rmu_ssc0000200.1_g000010
rosa_roxburghii	Rroxscaffold_2G00079050 Rroxscaffold_2G00116590 Rroxscaffold_2G00116600
rosa_rugosa	Rorug02G0272400 Rorug02G0567400 Rorug02G0567500
rosa_samantha	Rh2AG324300 Rh2AG647700 Rh2BG658200 Rh2CG311800 Rh2CG623700 Rh2DG351800 Rh2DG672000
rosa_wichuraiana	Rw2G026330 Rw2G053170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	5
AbsI	CCTCGAGG	1 cut(s)	620
Acc36I	ACCTGC	2 cut(s)	5, 937
AccII	CGCG	2 cut(s)	155, 261
AciI	CCGC	4 cut(s)	125, 153, 155, 353
AclWI	GGATC	6 cut(s)	212, 359, 372, 821, 1199, 1296
AcsI	RAATTY	1 cut(s)	1038
AcuI	CTGAAG	1 cut(s)	563
AfiI	CCNNNNNNNGG	3 cut(s)	113, 187, 448
AgsI	TTSAA	5 cut(s)	312, 320, 504, 850, 1285
AjnI	CCWGG	2 cut(s)	165, 809
AjuI	GAANNNNNNNTTGG	2 cut(s)	626, 658
AleI	CACNNNNGTG	1 cut(s)	981
AluBI	AGCT	7 cut(s)	52, 104, 299, 329, 434, 788, 842
AluI	AGCT	7 cut(s)	52, 104, 299, 329, 434, 788, 842
Alw26I	GTCTC	1 cut(s)	656
AlwI	GGATC	6 cut(s)	212, 359, 372, 821, 1199, 1296
Ama87I	CYCGRG	2 cut(s)	107, 620
AoxI	GGCC	2 cut(s)	92, 615
ApeKI	GCWGC	3 cut(s)	158, 226, 1016
ApoI	RAATTY	1 cut(s)	1038
Asp700I	GAANNNNTTC	2 cut(s)	176, 705
AspA2I	CCTAGG	1 cut(s)	221
AspS9I	GGNCC	4 cut(s)	93, 616, 1149, 1194
AsuC2I	CCSGG	1 cut(s)	96
AsuHPI	GGTGA	1 cut(s)	19
AvaI	CYCGRG	2 cut(s)	107, 620
AvaII	GGWCC	2 cut(s)	1149, 1194
AvrII	CCTAGG	1 cut(s)	221
BamHI	GGATCC	1 cut(s)	364
BauI	CACGAG	1 cut(s)	1047
BbvI	GCAGC	3 cut(s)	145, 213, 1003
BccI	CCATC	3 cut(s)	128, 1028, 1075
BcgI	CGANNNNNNTGC	4 cut(s)	1090, 1109, 1124, 1143
BciT130I	CCWGG	2 cut(s)	167, 811
BciVI	GTATCC	2 cut(s)	299, 1162
BclI	TGATCA	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	96
BcoDI	GTCTC	1 cut(s)	656
BfaI	CTAG	1 cut(s)	222
BfmI	CTRYAG	1 cut(s)	1254
BfuAI	ACCTGC	2 cut(s)	5, 937
BfuI	GTATCC	2 cut(s)	299, 1162
BisI	GCNGC	4 cut(s)	156, 159, 227, 1017
BlnI	CCTAGG	1 cut(s)	221
BlsI	GCNGC	4 cut(s)	157, 160, 228, 1018
Bme1390I	CCNGG	3 cut(s)	96, 167, 811
Bme18I	GGWCC	2 cut(s)	1149, 1194
BmeT110I	CYCGRG	2 cut(s)	107, 620
BmgT120I	GGNCC	4 cut(s)	93, 616, 1149, 1194
BmiI	GGNNCC	2 cut(s)	366, 1151
BmrFI	CCNGG	3 cut(s)	96, 167, 811
BmsI	GCATC	5 cut(s)	112, 340, 361, 528, 991
BpmI	CTGGAG	2 cut(s)	188, 1089
BpuMI	CCSGG	1 cut(s)	96
BsaJI	CCNNGG	5 cut(s)	153, 165, 221, 447, 1190
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 187, 448
Bse1I	ACTGG	3 cut(s)	548, 1072, 1184
Bse3DI	GCAATG	1 cut(s)	735
BseBI	CCWGG	2 cut(s)	167, 811
BseDI	CCNNGG	5 cut(s)	153, 165, 221, 447, 1190
BseGI	GGATG	5 cut(s)	133, 153, 205, 271, 703
BseLI	CCNNNNNNNGG	3 cut(s)	113, 187, 448
BseMI	GCAATG	1 cut(s)	735
BseMII	CTCAG	5 cut(s)	44, 200, 231, 525, 558
BseNI	ACTGG	3 cut(s)	548, 1072, 1184
BseRI	GAGGAG	8 cut(s)	403, 431, 491, 494, 662, 791, 845, 913
BseXI	GCAGC	3 cut(s)	145, 213, 1003
BsgI	GTGCAG	1 cut(s)	915
Bsh1236I	CGCG	2 cut(s)	155, 261
BshFI	GGCC	2 cut(s)	94, 617
BsiHKCI	CYCGRG	2 cut(s)	107, 620
BsiSI	CCGG	2 cut(s)	96, 292
BslI	CCNNNNNNNGG	3 cut(s)	113, 187, 448
BsmAI	GTCTC	1 cut(s)	656
BsmBI	CGTCTC	1 cut(s)	656
BsmI	GAATGC	1 cut(s)	1252
BsnI	GGCC	2 cut(s)	94, 617
BsoBI	CYCGRG	2 cut(s)	107, 620
Bsp143I	GATC	6 cut(s)	217, 277, 364, 813, 1204, 1288
Bsp68I	TCGCGA	1 cut(s)	261
BspACI	CCGC	4 cut(s)	125, 153, 155, 353
BspANI	GGCC	2 cut(s)	94, 617
BspCNI	CTCAG	5 cut(s)	45, 199, 232, 524, 559
BspFNI	CGCG	2 cut(s)	155, 261
BspLI	GGNNCC	2 cut(s)	366, 1151
BspMI	ACCTGC	2 cut(s)	5, 937
BspPI	GGATC	6 cut(s)	212, 359, 372, 821, 1199, 1296
BsrDI	GCAATG	1 cut(s)	735
BsrI	ACTGG	3 cut(s)	548, 1072, 1184
BssECI	CCNNGG	5 cut(s)	153, 165, 221, 447, 1190
BssMI	GATC	6 cut(s)	217, 277, 364, 813, 1204, 1288
BssSI	CACGAG	1 cut(s)	1047
BssT1I	CCWWGG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	1047
Bst2UI	CCWGG	2 cut(s)	167, 811
Bst4CI	ACNGT	2 cut(s)	31, 1024
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	6 cut(s)	53, 186, 240, 330, 511, 567
BstDSI	CCRYGG	2 cut(s)	153, 1190
BstF5I	GGATG	5 cut(s)	133, 153, 205, 271, 703
BstFNI	CGCG	2 cut(s)	155, 261
BstKTI	GATC	6 cut(s)	220, 280, 367, 816, 1207, 1291
BstMAI	GTCTC	1 cut(s)	656
BstMBI	GATC	6 cut(s)	217, 277, 364, 813, 1204, 1288
BstMWI	GCNNNNNNNGC	5 cut(s)	292, 737, 794, 1117, 1235
BstNI	CCWGG	2 cut(s)	167, 811
BstSCI	CCNGG	3 cut(s)	94, 165, 809
BstSFI	CTRYAG	1 cut(s)	1254
BstUI	CGCG	2 cut(s)	155, 261
BstV1I	GCAGC	3 cut(s)	145, 213, 1003
BstX2I	RGATCY	1 cut(s)	364
BstYI	RGATCY	1 cut(s)	364
BsuI	GTATCC	2 cut(s)	299, 1162
BsuRI	GGCC	2 cut(s)	94, 617
BtgI	CCRYGG	2 cut(s)	153, 1190
BtsCI	GGATG	5 cut(s)	133, 153, 205, 271, 703
BtuMI	TCGCGA	1 cut(s)	261
BveI	ACCTGC	2 cut(s)	5, 937
Cac8I	GCNNGC	1 cut(s)	297
Cfr13I	GGNCC	4 cut(s)	93, 616, 1149, 1194
Cfr42I	CCGCGG	1 cut(s)	156
CseI	GACGC	3 cut(s)	218, 401, 737
CviAII	CATG	4 cut(s)	524, 532, 961, 1108
DdeI	CTNAG	6 cut(s)	53, 186, 240, 330, 511, 567
DpnI	GATC	6 cut(s)	219, 279, 366, 815, 1206, 1290
DpnII	GATC	6 cut(s)	217, 277, 364, 813, 1204, 1288
Eco130I	CCWWGG	1 cut(s)	221
Eco47I	GGWCC	2 cut(s)	1149, 1194
Eco57I	CTGAAG	1 cut(s)	563
Eco88I	CYCGRG	2 cut(s)	107, 620
EcoRII	CCWGG	2 cut(s)	165, 809
EcoT14I	CCWWGG	1 cut(s)	221
ErhI	CCWWGG	1 cut(s)	221
Esp3I	CGTCTC	1 cut(s)	656
FaeI	CATG	4 cut(s)	527, 535, 964, 1111
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FatI	CATG	4 cut(s)	523, 531, 960, 1107
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	156, 159, 227, 1017
FokI	GGATG	5 cut(s)	140, 160, 212, 278, 710
Fsp4HI	GCNGC	4 cut(s)	156, 159, 227, 1017
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	4 cut(s)	156, 159, 227, 1017
GsuI	CTGGAG	2 cut(s)	188, 1089
HaeIII	GGCC	2 cut(s)	94, 617
HapII	CCGG	2 cut(s)	96, 292
HgaI	GACGC	3 cut(s)	218, 401, 737
Hin1II	CATG	4 cut(s)	527, 535, 964, 1111
HindIII	AAGCTT	1 cut(s)	786
HinfI	GANTC	4 cut(s)	491, 509, 706, 919
HpaII	CCGG	2 cut(s)	96, 292
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	1194
Hpy188III	TCNNGA	6 cut(s)	107, 188, 260, 368, 817, 1049
Hpy8I	GTNNAC	1 cut(s)	1194
Hpy99I	CGWCG	1 cut(s)	234
HpyCH4III	ACNGT	2 cut(s)	31, 1024
HpyCH4IV	ACGT	1 cut(s)	589
HpyCH4V	TGCA	6 cut(s)	932, 964, 1004, 1019, 1111, 1250
HpyF10VI	GCNNNNNNNGC	5 cut(s)	292, 737, 794, 1117, 1235
HpyF3I	CTNAG	6 cut(s)	53, 186, 240, 330, 511, 567
HpySE526I	ACGT	1 cut(s)	589
Hsp92II	CATG	4 cut(s)	527, 535, 964, 1111
Ksp22I	TGATCA	1 cut(s)	277
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	6 cut(s)	217, 277, 364, 813, 1204, 1288
LmnI	GCTCC	4 cut(s)	109, 421, 439, 1066
Lsp1109I	GCAGC	3 cut(s)	145, 213, 1003
LweI	GCATC	5 cut(s)	112, 340, 361, 528, 991
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	1 cut(s)	589
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	6 cut(s)	219, 279, 366, 815, 1206, 1290
MboI	GATC	6 cut(s)	217, 277, 364, 813, 1204, 1288
MfeI	CAATTG	2 cut(s)	315, 579
MflI	RGATCY	1 cut(s)	364
MluCI	AATT	8 cut(s)	63, 303, 315, 579, 597, 641, 1038, 1280
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	3 cut(s)	184, 1006, 1088
MroXI	GAANNNNTTC	2 cut(s)	176, 705
MseI	TTAA	3 cut(s)	81, 399, 765
MslI	CAYNNNNRTG	2 cut(s)	536, 981
MspA1I	CMGCKG	1 cut(s)	155
MspI	CCGG	2 cut(s)	96, 292
MspR9I	CCNGG	3 cut(s)	96, 167, 811
MunI	CAATTG	2 cut(s)	315, 579
Mva1269I	GAATGC	1 cut(s)	1252
MvaI	CCWGG	2 cut(s)	167, 811
MvnI	CGCG	2 cut(s)	155, 261
MwoI	GCNNNNNNNGC	5 cut(s)	292, 737, 794, 1117, 1235
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	6 cut(s)	217, 277, 364, 813, 1204, 1288
NlaIII	CATG	4 cut(s)	527, 535, 964, 1111
NlaIV	GGNNCC	2 cut(s)	366, 1151
NmuCI	GTSAC	1 cut(s)	7
NruI	TCGCGA	1 cut(s)	261
OliI	CACNNNNGTG	1 cut(s)	981
PaeR7I	CTCGAG	1 cut(s)	620
PaqCI	CACCTGC	1 cut(s)	5
PctI	GAATGC	1 cut(s)	1252
PdmI	GAANNNNTTC	2 cut(s)	176, 705
PfeI	GAWTC	3 cut(s)	491, 706, 919
PkrI	GCNGC	4 cut(s)	157, 160, 228, 1018
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
Psp6I	CCWGG	2 cut(s)	165, 809
PspGI	CCWGG	2 cut(s)	165, 809
PspN4I	GGNNCC	2 cut(s)	366, 1151
PspPI	GGNCC	4 cut(s)	93, 616, 1149, 1194
PspXI	VCTCGAGB	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	364
RruI	TCGCGA	1 cut(s)	261
RseI	CAYNNNNRTG	2 cut(s)	536, 981
SacII	CCGCGG	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	81, 399, 765
SatI	GCNGC	4 cut(s)	156, 159, 227, 1017
Sau3AI	GATC	6 cut(s)	217, 277, 364, 813, 1204, 1288
Sau96I	GGNCC	4 cut(s)	93, 616, 1149, 1194
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	3 cut(s)	96, 167, 811
SfaNI	GCATC	5 cut(s)	112, 340, 361, 528, 991
SfcI	CTRYAG	1 cut(s)	1254
Sfr274I	CTCGAG	1 cut(s)	620
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
SinI	GGWCC	2 cut(s)	1149, 1194
SlaI	CTCGAG	1 cut(s)	620
SmiMI	CAYNNNNRTG	2 cut(s)	536, 981
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	8 cut(s)	63, 303, 315, 579, 597, 641, 1038, 1280
SsiI	CCGC	4 cut(s)	125, 153, 155, 353
SspI	AATATT	1 cut(s)	971
SspMI	CTAG	1 cut(s)	222
StyD4I	CCNGG	3 cut(s)	94, 165, 809
StyI	CCWWGG	1 cut(s)	221
TaaI	ACNGT	2 cut(s)	31, 1024
TaiI	ACGT	1 cut(s)	592
TaqI	TCGA	2 cut(s)	621, 937
TasI	AATT	8 cut(s)	63, 303, 315, 579, 597, 641, 1038, 1280
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	3 cut(s)	491, 706, 919
Tru1I	TTAA	3 cut(s)	81, 399, 765
Tru9I	TTAA	3 cut(s)	81, 399, 765
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	3 cut(s)	158, 226, 1016
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	6 cut(s)	144, 714, 774, 798, 949, 1259
TspGWI	ACGGA	1 cut(s)	1179
VpaK11BI	GGWCC	2 cut(s)	1149, 1194
XapI	RAATTY	1 cut(s)	1038
XcmI	CCANNNNNNNNNTGG	1 cut(s)	948
XhoI	CTCGAG	1 cut(s)	620
XmaJI	CCTAGG	1 cut(s)	221
XmnI	GAANNNNTTC	2 cut(s)	176, 705
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.