RLG00000022179

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001946
Physical Location & Seq
Reverse (-)
81556257 .. 81560145
3889 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022179

Sequence Viewer

Length: 1224 bp
ATGACCTCGGTTTTAAGCCAAAGTCCCACACGCGTTGGGAATATAAGAAAACCCAAAGAGAAAATGAGGTTTGTTGCGACGGCTTTTGTGGCGATTCTGTTTGGCTTCTTTCTAGGAGTGTCATTTCCAACGGTTTCGTTAACTAAGATGAATCTCCCATCCAGCCTTTTACCTTCCATTGATCTTTCATACATAGAGGACAAGTACTCAGGGTTCTCAACCCAAGCACTGGTGAATGCCTGGTCTTCTTTGAAGAGCAACAGAGATATCTCTGTAAAATACATCCCTAATGATGCAAAGATTTGGGTTCCAACAAATCCTCCAGGGGCTGAAAGACTACCCCCTGGCATCATAGAATCTGAGTCAGATCTATATCTTCGTCGATTATGGGGTCTGCCCAGTGAGGACTTAACCATCAAGCCAAAGTATCTTGTAACCTTTACTGTAGGCCTTGCTCAAAAACAAAATATAAATGCAGCAGTTAAAAAGTTCTCAGAGAATTTCACAGTTGTTTTATTTCACTATGATGGTCGGACAAGCGAATGGGATGAGTTTGAGTGGTCAAAGCGGGCTATCCATGTGAGCATTCGGAAGCAAACTAAATGGTGGTATGCCAAGCGTTTTTTGCATCCTGACATTGTGGCATCCTATGAATACATATTTATTTGGGATGAGGATCTCGGTGTGGAGCACTTTAACGCAGAGGAATACATAAAACTAGTAAGGAAACATGGGTTGGAAATATCACAGCCTGGTTTAGAACCAAATAATGGGCTAACATGGCAGATGACAAAGCGGAGAGGTCATAGTGAAGTTCACATGCAGACAGAGGAGAAACCTGGTTGGTGTAATGATCCGCATTTGCCGCCCTGTGCAGCGTTTGTAGAAATTATGGCGCCTGTGTTTTCTCGGGATGCATGGCGTTGTGTTTGGCATATGATTCAGAATGACCTGGTCCATGGTTGGGGTCTGGATTTTGCTCTTAGACGCTGTGTAGAGCCTGCACATGAGAAAATAGGAGTTGTAGATGCACAGTGGATTGTCCATCAAGGTGTTCCTTCACTTGGAAACCAGGGGCAAGCAGGGAGTGGGAGAGCGCCATGGGAAGGGGTGAGGGAGAGGTGTAGAAGAGAATGGACTATGTTTCAAGCACGAATGGTTGGTGCAGAGAGAGCATATTTTGAAGAAATGGGAATTGATCCCCCAAATTCAACAGCACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

408

Amino Acids

46.65

Weight (kDa)

8.18

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 105 - 391 3.6e-141 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 895
AccB7I CCANNNNNTGG 2 cut(s) 229, 770
AccII CGCG 1 cut(s) 33
AciI CCGC 4 cut(s) 568, 796, 857, 866
AclWI GGATC 3 cut(s) 684, 848, 1193
AcsI RAATTY 2 cut(s) 499, 1207
AcyI GRCGYC 1 cut(s) 896
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 5 cut(s) 229, 770, 964, 1064, 1106
AflIII ACRYGT 1 cut(s) 31
AgsI TTSAA 4 cut(s) 253, 1148, 1184, 1212
AhlI ACTAGT 1 cut(s) 718
AjnI CCWGG 7 cut(s) 239, 322, 343, 751, 838, 951, 1071
AjuI GAANNNNNNNTTGG 2 cut(s) 719, 751
Alw21I GWGCWC 1 cut(s) 693
AlwI GGATC 3 cut(s) 684, 848, 1193
AlwNI CAGNNNCTG 1 cut(s) 329
Ama87I CYCGRG 1 cut(s) 909
AoxI GGCC 1 cut(s) 448
ApeKI GCWGC 2 cut(s) 476, 875
ApoI RAATTY 2 cut(s) 499, 1207
AspLEI GCGC 2 cut(s) 898, 1099
AspS9I GGNCC 1 cut(s) 955
AsuHPI GGTGA 2 cut(s) 244, 1123
AvaI CYCGRG 1 cut(s) 909
AvaII GGWCC 1 cut(s) 955
BanI GGYRCC 1 cut(s) 895
BbsI GAAGAC 1 cut(s) 237
Bbv12I GWGCWC 1 cut(s) 693
BbvI GCAGC 2 cut(s) 488, 887
BccI CCATC 4 cut(s) 166, 422, 521, 1053
BceAI ACGGC 1 cut(s) 96
BciT130I CCWGG 7 cut(s) 241, 324, 345, 753, 840, 953, 1073
BcuI ACTAGT 1 cut(s) 718
BfaI CTAG 2 cut(s) 113, 719
BfmI CTRYAG 1 cut(s) 444
BfoI RGCGCY 2 cut(s) 899, 1100
BglII AGATCT 1 cut(s) 367
BisI GCNGC 3 cut(s) 477, 866, 876
BlsI GCNGC 3 cut(s) 478, 867, 877
BmcAI AGTACT 1 cut(s) 206
Bme1390I CCNGG 7 cut(s) 241, 324, 345, 753, 840, 953, 1073
Bme18I GGWCC 1 cut(s) 955
BmeT110I CYCGRG 1 cut(s) 909
BmgT120I GGNCC 1 cut(s) 955
BmiI GGNNCC 2 cut(s) 309, 897
BmrFI CCNGG 7 cut(s) 241, 324, 345, 753, 840, 953, 1073
BmrI ACTGGG 1 cut(s) 393
BmsI GCATC 6 cut(s) 283, 357, 637, 653, 904, 1018
BmuI ACTGGG 1 cut(s) 393
BpiI GAAGAC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 306
BsaBI GATNNNNATC 2 cut(s) 372, 675
BsaHI GRCGYC 1 cut(s) 896
BsaJI CCNNGG 6 cut(s) 6, 323, 343, 958, 1072, 1100
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 5 cut(s) 229, 770, 964, 1064, 1106
Bse1I ACTGG 2 cut(s) 234, 399
Bse8I GATNNNNATC 2 cut(s) 372, 675
BseBI CCWGG 7 cut(s) 241, 324, 345, 753, 840, 953, 1073
BseDI CCNNGG 6 cut(s) 6, 323, 343, 958, 1072, 1100
BseGI GGATG 7 cut(s) 158, 282, 553, 628, 644, 676, 919
BseJI GATNNNNATC 2 cut(s) 372, 675
BseLI CCNNNNNNNGG 5 cut(s) 229, 770, 964, 1064, 1106
BseMII CTCAG 3 cut(s) 222, 351, 507
BseNI ACTGG 2 cut(s) 234, 399
BseRI GAGGAG 1 cut(s) 845
BseXI GCAGC 2 cut(s) 488, 887
BsgI GTGCAG 3 cut(s) 894, 987, 1185
Bsh1236I CGCG 1 cut(s) 33
BshFI GGCC 1 cut(s) 450
BshNI GGYRCC 1 cut(s) 895
BsiHKAI GWGCWC 1 cut(s) 693
BsiHKCI CYCGRG 1 cut(s) 909
BslFI GGGAC 1 cut(s) 9
BslI CCNNNNNNNGG 5 cut(s) 229, 770, 964, 1064, 1106
BsmFI GGGAC 1 cut(s) 9
BsmI GAATGC 2 cut(s) 241, 585
BsnI GGCC 1 cut(s) 450
BsoBI CYCGRG 1 cut(s) 909
Bsp1286I GDGCHC 1 cut(s) 693
Bsp143I GATC 5 cut(s) 181, 367, 676, 853, 1198
Bsp19I CCATGG 2 cut(s) 958, 1100
BspACI CCGC 4 cut(s) 568, 796, 857, 866
BspANI GGCC 1 cut(s) 450
BspCNI CTCAG 3 cut(s) 221, 352, 506
BspFNI CGCG 1 cut(s) 33
BspLI GGNNCC 2 cut(s) 309, 897
BspPI GGATC 3 cut(s) 684, 848, 1193
BspQI GCTCTTC 1 cut(s) 248
BspT107I GGYRCC 1 cut(s) 895
BsrI ACTGG 2 cut(s) 234, 399
BssECI CCNNGG 6 cut(s) 6, 323, 343, 958, 1072, 1100
BssMI GATC 5 cut(s) 181, 367, 676, 853, 1198
BssNI GRCGYC 1 cut(s) 896
BssT1I CCWWGG 2 cut(s) 958, 1100
Bst2UI CCWGG 7 cut(s) 241, 324, 345, 753, 840, 953, 1073
Bst4CI ACNGT 4 cut(s) 133, 445, 508, 1035
Bst6I CTCTTC 2 cut(s) 248, 1123
BstACI GRCGYC 1 cut(s) 896
BstC8I GCNNGC 3 cut(s) 570, 1002, 1080
BstDEI CTNAG 5 cut(s) 144, 208, 360, 493, 983
BstDSI CCRYGG 2 cut(s) 958, 1100
BstF5I GGATG 7 cut(s) 158, 282, 553, 628, 644, 676, 919
BstFNI CGCG 1 cut(s) 33
BstH2I RGCGCY 2 cut(s) 899, 1100
BstHHI GCGC 2 cut(s) 898, 1099
BstKTI GATC 5 cut(s) 184, 370, 679, 856, 1201
BstMBI GATC 5 cut(s) 181, 367, 676, 853, 1198
BstMWI GCNNNNNNNGC 5 cut(s) 89, 625, 781, 865, 1172
BstNI CCWGG 7 cut(s) 241, 324, 345, 753, 840, 953, 1073
BstNSI RCATGY 1 cut(s) 823
BstSCI CCNGG 7 cut(s) 239, 322, 343, 751, 838, 951, 1071
BstSFI CTRYAG 1 cut(s) 444
BstUI CGCG 1 cut(s) 33
BstV1I GCAGC 2 cut(s) 488, 887
BstV2I GAAGAC 1 cut(s) 237
BstX2I RGATCY 2 cut(s) 367, 676
BstYI RGATCY 2 cut(s) 367, 676
BsuRI GGCC 1 cut(s) 450
BtgI CCRYGG 2 cut(s) 958, 1100
BtsCI GGATG 7 cut(s) 158, 282, 553, 628, 644, 676, 919
BtsIMutI CAGTG 3 cut(s) 227, 406, 1040
Cac8I GCNNGC 3 cut(s) 570, 1002, 1080
CaiI CAGNNNCTG 1 cut(s) 329
CfoI GCGC 2 cut(s) 898, 1099
Cfr13I GGNCC 1 cut(s) 955
CseI GACGC 1 cut(s) 996
CsiI ACCWGGT 2 cut(s) 838, 951
Csp6I GTAC 1 cut(s) 205
CspCI CAANNNNNGTGG 2 cut(s) 16, 51
CviAII CATG 8 cut(s) 578, 731, 780, 820, 918, 959, 1007, 1101
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 5 cut(s) 144, 208, 360, 493, 983
DinI GGCGCC 1 cut(s) 897
DpnI GATC 5 cut(s) 183, 369, 678, 855, 1200
DpnII GATC 5 cut(s) 181, 367, 676, 853, 1198
Eam1104I CTCTTC 2 cut(s) 248, 1123
EarI CTCTTC 2 cut(s) 248, 1123
Eco130I CCWWGG 2 cut(s) 958, 1100
Eco147I AGGCCT 1 cut(s) 450
Eco32I GATATC 1 cut(s) 268
Eco47I GGWCC 1 cut(s) 955
Eco88I CYCGRG 1 cut(s) 909
EcoRII CCWGG 7 cut(s) 239, 322, 343, 751, 838, 951, 1071
EcoRV GATATC 1 cut(s) 268
EcoT14I CCWWGG 2 cut(s) 958, 1100
EcoT22I ATGCAT 1 cut(s) 919
EgeI GGCGCC 1 cut(s) 897
EheI GGCGCC 1 cut(s) 897
ErhI CCWWGG 2 cut(s) 958, 1100
FaeI CATG 8 cut(s) 581, 734, 783, 823, 921, 962, 1010, 1104
FaqI GGGAC 1 cut(s) 9
FatI CATG 8 cut(s) 577, 730, 779, 819, 917, 958, 1006, 1100
FauI CCCGC 1 cut(s) 561
FauNDI CATATG 1 cut(s) 936
Fnu4HI GCNGC 3 cut(s) 477, 866, 876
FokI GGATG 7 cut(s) 145, 269, 560, 615, 631, 683, 926
Fsp4HI GCNGC 3 cut(s) 477, 866, 876
FspBI CTAG 2 cut(s) 113, 719
GlaI GCGC 2 cut(s) 897, 1098
GluI GCNGC 3 cut(s) 477, 866, 876
GsuI CTGGAG 1 cut(s) 306
HaeII RGCGCY 2 cut(s) 899, 1100
HaeIII GGCC 1 cut(s) 450
HgaI GACGC 1 cut(s) 996
HhaI GCGC 2 cut(s) 898, 1099
Hin1I GRCGYC 1 cut(s) 896
Hin1II CATG 8 cut(s) 581, 734, 783, 823, 921, 962, 1010, 1104
Hin6I GCGC 2 cut(s) 896, 1097
HinP1I GCGC 2 cut(s) 896, 1097
HincII GTYRAC 1 cut(s) 141
HindII GTYRAC 1 cut(s) 141
HinfI GANTC 5 cut(s) 94, 151, 356, 362, 940
HpaI GTTAAC 1 cut(s) 141
HphI GGTGA 2 cut(s) 244, 1123
Hpy166II GTNNAC 2 cut(s) 141, 817
Hpy188I TCNGA 6 cut(s) 361, 367, 496, 534, 591, 945
Hpy188III TCNNGA 3 cut(s) 632, 911, 971
Hpy8I GTNNAC 2 cut(s) 141, 817
Hpy99I CGWCG 2 cut(s) 82, 384
HpyAV CCTTC 3 cut(s) 183, 1068, 1100
HpyCH4III ACNGT 4 cut(s) 133, 445, 508, 1035
HpyCH4IV ACGT 1 cut(s) 1219
HpyCH4V TGCA 9 cut(s) 296, 476, 628, 823, 875, 917, 1004, 1031, 1166
HpyF10VI GCNNNNNNNGC 5 cut(s) 89, 625, 781, 865, 1172
HpyF3I CTNAG 5 cut(s) 144, 208, 360, 493, 983
HpySE526I ACGT 1 cut(s) 1219
Hsp92I GRCGYC 1 cut(s) 896
Hsp92II CATG 8 cut(s) 581, 734, 783, 823, 921, 962, 1010, 1104
HspAI GCGC 2 cut(s) 896, 1097
KasI GGCGCC 1 cut(s) 895
KspAI GTTAAC 1 cut(s) 141
Kzo9I GATC 5 cut(s) 181, 367, 676, 853, 1198
LguI GCTCTTC 1 cut(s) 248
LmnI GCTCC 1 cut(s) 688
Lsp1109I GCAGC 2 cut(s) 488, 887
LweI GCATC 6 cut(s) 283, 357, 637, 653, 904, 1018
MabI ACCWGGT 2 cut(s) 838, 951
MaeI CTAG 2 cut(s) 113, 719
MaeII ACGT 1 cut(s) 1219
MaeIII GTNAC 1 cut(s) 433
MalI GATC 5 cut(s) 183, 369, 678, 855, 1200
MboI GATC 5 cut(s) 181, 367, 676, 853, 1198
MboII GAAGA 5 cut(s) 237, 265, 368, 1140, 1196
MflI RGATCY 2 cut(s) 367, 676
MhlI GDGCHC 1 cut(s) 693
MluCI AATT 4 cut(s) 499, 888, 1194, 1207
MluI ACGCGT 1 cut(s) 31
Mly113I GGCGCC 1 cut(s) 896
MlyI GAGTC 1 cut(s) 371
MmeI TCCRAC 4 cut(s) 152, 335, 512, 717
Mph1103I ATGCAT 1 cut(s) 919
MseI TTAA 5 cut(s) 14, 140, 410, 483, 696
MslI CAYNNNNRTG 2 cut(s) 525, 1050
MspR9I CCNGG 7 cut(s) 241, 324, 345, 753, 840, 953, 1073
Mva1269I GAATGC 2 cut(s) 241, 585
MvaI CCWGG 7 cut(s) 241, 324, 345, 753, 840, 953, 1073
MvnI CGCG 1 cut(s) 33
MwoI GCNNNNNNNGC 5 cut(s) 89, 625, 781, 865, 1172
NarI GGCGCC 1 cut(s) 896
NcoI CCATGG 2 cut(s) 958, 1100
NdeI CATATG 1 cut(s) 936
NdeII GATC 5 cut(s) 181, 367, 676, 853, 1198
NlaIII CATG 8 cut(s) 581, 734, 783, 823, 921, 962, 1010, 1104
NlaIV GGNNCC 2 cut(s) 309, 897
NsiI ATGCAT 1 cut(s) 919
NspI RCATGY 1 cut(s) 823
PceI AGGCCT 1 cut(s) 450
PciSI GCTCTTC 1 cut(s) 248
PctI GAATGC 2 cut(s) 241, 585
PfeI GAWTC 4 cut(s) 94, 151, 356, 940
PflFI GACNNNGTC 1 cut(s) 953
PflMI CCANNNNNTGG 2 cut(s) 229, 770
PkrI GCNGC 3 cut(s) 478, 867, 877
PleI GAGTC 1 cut(s) 370
PluTI GGCGCC 1 cut(s) 899
PpsI GAGTC 1 cut(s) 370
Psp6I CCWGG 7 cut(s) 239, 322, 343, 751, 838, 951, 1071
PspGI CCWGG 7 cut(s) 239, 322, 343, 751, 838, 951, 1071
PspN4I GGNNCC 2 cut(s) 309, 897
PspPI GGNCC 1 cut(s) 955
PsrI GAACNNNNNNTAC 2 cut(s) 197, 229
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 2 cut(s) 367, 676
PsyI GACNNNGTC 1 cut(s) 953
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 2 cut(s) 525, 1050
SapI GCTCTTC 1 cut(s) 248
SaqAI TTAA 5 cut(s) 14, 140, 410, 483, 696
SatI GCNGC 3 cut(s) 477, 866, 876
Sau3AI GATC 5 cut(s) 181, 367, 676, 853, 1198
Sau96I GGNCC 1 cut(s) 955
ScaI AGTACT 1 cut(s) 206
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 7 cut(s) 241, 324, 345, 753, 840, 953, 1073
SduI GDGCHC 1 cut(s) 693
SexAI ACCWGGT 2 cut(s) 838, 951
SfaNI GCATC 6 cut(s) 283, 357, 637, 653, 904, 1018
SfcI CTRYAG 1 cut(s) 444
SfoI GGCGCC 1 cut(s) 897
SinI GGWCC 1 cut(s) 955
SmiMI CAYNNNNRTG 2 cut(s) 525, 1050
SpeI ACTAGT 1 cut(s) 718
Sse9I AATT 4 cut(s) 499, 888, 1194, 1207
SseBI AGGCCT 1 cut(s) 450
SsiI CCGC 4 cut(s) 568, 796, 857, 866
SspDI GGCGCC 1 cut(s) 895
SspMI CTAG 2 cut(s) 113, 719
StuI AGGCCT 1 cut(s) 450
StyD4I CCNGG 7 cut(s) 239, 322, 343, 751, 838, 951, 1071
StyI CCWWGG 2 cut(s) 958, 1100
TaaI ACNGT 4 cut(s) 133, 445, 508, 1035
TaiI ACGT 1 cut(s) 1222
TaqI TCGA 1 cut(s) 382
TasI AATT 4 cut(s) 499, 888, 1194, 1207
TatI WGTACW 1 cut(s) 204
TauI GCSGC 1 cut(s) 868
TfiI GAWTC 4 cut(s) 94, 151, 356, 940
Tru1I TTAA 5 cut(s) 14, 140, 410, 483, 696
Tru9I TTAA 5 cut(s) 14, 140, 410, 483, 696
TscAI CASTG 3 cut(s) 234, 406, 1040
TseI GCWGC 2 cut(s) 476, 875
TspDTI ATGAA 3 cut(s) 164, 177, 666
TspRI CASTG 3 cut(s) 234, 406, 1040
Tth111I GACNNNGTC 1 cut(s) 953
Van91I CCANNNNNTGG 2 cut(s) 229, 770
VpaK11BI GGWCC 1 cut(s) 955
XapI RAATTY 2 cut(s) 499, 1207
XceI RCATGY 1 cut(s) 823
XspI CTAG 2 cut(s) 113, 719
ZrmI AGTACT 1 cut(s) 206
Zsp2I ATGCAT 1 cut(s) 919
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.