Rroxscaffold_2G00116600

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001946
Physical Location & Seq
Reverse (-)
43848047 .. 43848790
744 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00116600.1

Sequence Viewer

Length: 423 bp
ATGAGTAGATTTGTTACAGATCTGTTCACTAATCTGAACCTTTTCTTGTGGAGGCGGCACTTGCAGGACTTAACCATCAAGCCAAAACATCTTGTAACCTTTACTGTAGGCCGTGCTCAGAAAAAATATATAGATGCAGCAGTTAAAAAGACAAGTGAATGGGATGAGTTTGAGAGGTCAAAGCAGGCTATCCATGTGAGCATTCAGAAGCAAACTAAATGGTGGTGTGCCAAGCGTTTTGTGCATCCTGACATTGTGGCATCCTATGAATACATATTAATTTGGGATGAAGATCTCGGTGTGGAGCACTTTAATGCAGAGGAATACATAAAACTAGTAAGGAAATATGGGTTGGAAGTATCACAGTCTGGTTTAGAACCAAATAATGGGCTAACACGGCAGATGACAAAGGAGAGGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

140

Amino Acids

16.66

Weight (kDa)

9.19

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 15 - 139 3.5e-43 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 386
AciI CCGC 1 cut(s) 55
AfiI CCNNNNNNNGG 1 cut(s) 386
AhlI ACTAGT 1 cut(s) 334
AjuI GAANNNNNNNTTGG 2 cut(s) 335, 367
Alw21I GWGCWC 2 cut(s) 118, 309
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 137
ArsI GACNNNNNNTTYG 1 cut(s) 401
AseI ATTAAT 1 cut(s) 278
Asp700I GAANNNNTTC 1 cut(s) 41
Bbv12I GWGCWC 2 cut(s) 118, 309
BbvI GCAGC 1 cut(s) 149
BccI CCATC 1 cut(s) 83
BceAI ACGGC 2 cut(s) 96, 413
BcuI ACTAGT 1 cut(s) 334
BfaI CTAG 1 cut(s) 335
BfmI CTRYAG 1 cut(s) 105
BglII AGATCT 2 cut(s) 19, 292
BisI GCNGC 2 cut(s) 56, 138
BlsI GCNGC 2 cut(s) 57, 139
BmsI GCATC 3 cut(s) 124, 253, 269
BsaBI GATNNNNATC 1 cut(s) 291
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse8I GATNNNNATC 1 cut(s) 291
BseGI GGATG 4 cut(s) 169, 244, 260, 292
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMII CTCAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 149
BshFI GGCC 1 cut(s) 111
BsiHKAI GWGCWC 2 cut(s) 118, 309
BslI CCNNNNNNNGG 1 cut(s) 386
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 118, 309
Bsp143I GATC 2 cut(s) 19, 292
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 1 cut(s) 130
BssMI GATC 2 cut(s) 19, 292
Bst4CI ACNGT 2 cut(s) 106, 366
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 4 cut(s) 169, 244, 260, 292
BstKTI GATC 2 cut(s) 22, 295
BstMBI GATC 2 cut(s) 19, 292
BstMWI GCNNNNNNNGC 3 cut(s) 61, 241, 397
BstSFI CTRYAG 1 cut(s) 105
BstV1I GCAGC 1 cut(s) 149
BstX2I RGATCY 2 cut(s) 19, 292
BstYI RGATCY 2 cut(s) 19, 292
BsuRI GGCC 1 cut(s) 111
BtsCI GGATG 4 cut(s) 169, 244, 260, 292
Cac8I GCNNGC 1 cut(s) 186
CviAII CATG 1 cut(s) 194
CviJI RGCY 4 cut(s) 82, 111, 188, 391
CviKI_1 RGCY 4 cut(s) 82, 111, 188, 391
DdeI CTNAG 1 cut(s) 117
DpnI GATC 2 cut(s) 21, 294
DpnII GATC 2 cut(s) 19, 292
FaeI CATG 1 cut(s) 197
FaiI YATR 8 cut(s) 129, 131, 195, 267, 275, 329, 348, 421
FatI CATG 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 56, 138
FokI GGATG 4 cut(s) 176, 231, 247, 299
Fsp4HI GCNGC 2 cut(s) 56, 138
FspBI CTAG 1 cut(s) 335
GluI GCNGC 2 cut(s) 56, 138
HaeIII GGCC 1 cut(s) 111
Hin1II CATG 1 cut(s) 197
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 3 cut(s) 36, 120, 207
Hpy188III TCNNGA 1 cut(s) 248
Hpy8I GTNNAC 1 cut(s) 27
HpyCH4III ACNGT 2 cut(s) 106, 366
HpyCH4V TGCA 4 cut(s) 64, 137, 244, 317
HpyF10VI GCNNNNNNNGC 3 cut(s) 61, 241, 397
HpyF3I CTNAG 1 cut(s) 117
Hsp92II CATG 1 cut(s) 197
Kzo9I GATC 2 cut(s) 19, 292
LmnI GCTCC 1 cut(s) 304
LpnPI CCDG 4 cut(s) 50, 170, 261, 354
Lsp1109I GCAGC 1 cut(s) 149
LweI GCATC 3 cut(s) 124, 253, 269
MaeI CTAG 1 cut(s) 335
MaeIII GTNAC 2 cut(s) 13, 94
MalI GATC 2 cut(s) 21, 294
MboI GATC 2 cut(s) 19, 292
MboII GAAGA 1 cut(s) 302
MflI RGATCY 2 cut(s) 19, 292
MhlI GDGCHC 2 cut(s) 118, 309
MluCI AATT 1 cut(s) 279
MmeI TCCRAC 1 cut(s) 333
MnlI CCTC 4 cut(s) 45, 168, 313, 408
MroXI GAANNNNTTC 1 cut(s) 41
MseI TTAA 4 cut(s) 71, 144, 278, 312
MslI CAYNNNNRTG 1 cut(s) 312
Mva1269I GAATGC 1 cut(s) 201
MwoI GCNNNNNNNGC 3 cut(s) 61, 241, 397
NdeII GATC 2 cut(s) 19, 292
NlaIII CATG 1 cut(s) 197
PctI GAATGC 1 cut(s) 201
PdmI GAANNNNTTC 1 cut(s) 41
PflMI CCANNNNNTGG 1 cut(s) 386
PkrI GCNGC 2 cut(s) 57, 139
PshBI ATTAAT 1 cut(s) 278
PsuI RGATCY 2 cut(s) 19, 292
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 4 cut(s) 71, 144, 278, 312
SatI GCNGC 2 cut(s) 56, 138
Sau3AI GATC 2 cut(s) 19, 292
SduI GDGCHC 2 cut(s) 118, 309
SetI ASST 4 cut(s) 42, 101, 179, 419
SfaNI GCATC 3 cut(s) 124, 253, 269
SfcI CTRYAG 1 cut(s) 105
SmiMI CAYNNNNRTG 1 cut(s) 312
SpeI ACTAGT 1 cut(s) 334
Sse9I AATT 1 cut(s) 279
SsiI CCGC 1 cut(s) 55
SspMI CTAG 1 cut(s) 335
TaaI ACNGT 2 cut(s) 106, 366
TasI AATT 1 cut(s) 279
TauI GCSGC 1 cut(s) 58
Tru1I TTAA 4 cut(s) 71, 144, 278, 312
Tru9I TTAA 4 cut(s) 71, 144, 278, 312
TseI GCWGC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 282, 303
Van91I CCANNNNNTGG 1 cut(s) 386
VspI ATTAAT 1 cut(s) 278
XmnI GAANNNNTTC 1 cut(s) 41
XspI CTAG 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.