Rh2BG658200

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001946
Physical Location & Seq
Reverse (-)
87446747 .. 87451974
5228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG658200.1

Sequence Viewer

Length: 1026 bp
ATGGGCAGTCCCACACGCGTTGGGAATATAAGAAAACCCAAAGAGAAAATGAGGTTTGTTGCGACAGCTTTTGTGGCGATTCTGTTTGGCTTCTTTCTAGGAGTGTCATTTCCAACGGTTTCATTAACTAAGATGAATCTCCCATCCAGCCTTTTACCTTCCATTGATCTTTCATACATAGAGGACAAGTACTCGGGGTTCTCAACCCAAGCACTGGTGAATGCCTGGTCTTCTTTGAAGAGCAACAGAGATATCTCTGTAAAATACATCCCTAATGATGCAAAGATTTGGGTTCCAACAAATCCTCCAGGGGCTGAAAGACTACCCCCTGGCATCGTAGAATCTGAGTCAGATCTATATCTTCGTCGATTATGGGGTCTGCCCAGTGAGGACTTAACCATCAAGCCAAAGTATCTTGTAACCTTTACTGTAGGCCTTGCTCAGAAACAAAATATAAATGCAGCAGTTAAAAAGTTCTCAGAGAATTTCACAATTGTTTTATTTCACTATGATGGTCGGACAAGTGAATGGGATGAGTTTGAGTGGTCAAAGCGGGCCATCCATGTGAGCATTCGGAAGCAAACTAAATGGTGGTATGCCAAGCGTTTTTTGCATCCTGACATTGTGGCATCCTATGAATACATATTTATTTGGGATGAGGATCTCGGTGTGGAGCACTTTAACGCAGAGGAATACATAAAACTAGTAAGGAAACATGGGTTGGAAATATCACAGCCTGGTTTAGAACCAAATAATGGGCTAACATGGCAGATGACAAAGCGGAGAGGTCATAGTGAAGTTCACATGCAGACAGAGGAGAAACCTGGTTGGTGTAATGATCCGCATTTACCGCCCTGTGCAGCGTTTGTAGAAATTATGGCGCCTGTATTTTCTCGGGATGCATGGCGTTGTGTTTGGCATATGATTCAGAATGACCTGGTCCATGGTTGGGGTCTGGATTTTGCTCTTAGACGCTGTGTAGAGGTTCAAACCATTTCTTTTTCTTCTCTTGTCATTCTGCCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

341

Amino Acids

39.23

Weight (kDa)

8.24

Isoelectric Point (pI)

44.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 100 - 328 1.6e-121 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 880
AccB7I CCANNNNNTGG 2 cut(s) 214, 755
AccII CGCG 1 cut(s) 18
AciI CCGC 4 cut(s) 553, 781, 842, 851
AclWI GGATC 2 cut(s) 669, 833
AcsI RAATTY 1 cut(s) 484
AcyI GRCGYC 1 cut(s) 881
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 3 cut(s) 214, 755, 949
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 2 cut(s) 238, 989
AhlI ACTAGT 1 cut(s) 703
AjnI CCWGG 6 cut(s) 224, 307, 328, 736, 823, 936
AjuI GAANNNNNNNTTGG 2 cut(s) 704, 736
AluBI AGCT 1 cut(s) 68
AluI AGCT 1 cut(s) 68
Alw21I GWGCWC 1 cut(s) 678
AlwI GGATC 2 cut(s) 669, 833
AlwNI CAGNNNCTG 1 cut(s) 314
Ama87I CYCGRG 2 cut(s) 193, 894
AoxI GGCC 2 cut(s) 433, 555
ApeKI GCWGC 2 cut(s) 461, 860
ApoI RAATTY 1 cut(s) 484
AspLEI GCGC 1 cut(s) 883
AspS9I GGNCC 2 cut(s) 555, 940
AsuHPI GGTGA 1 cut(s) 229
AvaI CYCGRG 2 cut(s) 193, 894
AvaII GGWCC 1 cut(s) 940
BanI GGYRCC 1 cut(s) 880
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 678
BbvI GCAGC 2 cut(s) 473, 872
BccI CCATC 4 cut(s) 151, 407, 506, 566
BciT130I CCWGG 6 cut(s) 226, 309, 330, 738, 825, 938
BcuI ACTAGT 1 cut(s) 703
BfaI CTAG 2 cut(s) 98, 704
BfmI CTRYAG 1 cut(s) 429
BfoI RGCGCY 1 cut(s) 884
BglII AGATCT 1 cut(s) 352
BisI GCNGC 2 cut(s) 462, 861
BlsI GCNGC 2 cut(s) 463, 862
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 6 cut(s) 226, 309, 330, 738, 825, 938
Bme18I GGWCC 1 cut(s) 940
BmeT110I CYCGRG 2 cut(s) 193, 894
BmgT120I GGNCC 2 cut(s) 555, 940
BmiI GGNNCC 2 cut(s) 294, 882
BmrFI CCNGG 6 cut(s) 226, 309, 330, 738, 825, 938
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 5 cut(s) 268, 342, 622, 638, 889
BmuI ACTGGG 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 291
BsaBI GATNNNNATC 2 cut(s) 357, 660
BsaHI GRCGYC 1 cut(s) 881
BsaJI CCNNGG 3 cut(s) 308, 328, 943
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 755, 949
Bse1I ACTGG 2 cut(s) 219, 384
Bse8I GATNNNNATC 2 cut(s) 357, 660
BseBI CCWGG 6 cut(s) 226, 309, 330, 738, 825, 938
BseDI CCNNGG 3 cut(s) 308, 328, 943
BseGI GGATG 8 cut(s) 143, 267, 538, 558, 613, 629, 661, 904
BseJI GATNNNNATC 2 cut(s) 357, 660
BseLI CCNNNNNNNGG 3 cut(s) 214, 755, 949
BseMII CTCAG 3 cut(s) 336, 455, 492
BseNI ACTGG 2 cut(s) 219, 384
BseRI GAGGAG 1 cut(s) 830
BseXI GCAGC 2 cut(s) 473, 872
BsgI GTGCAG 1 cut(s) 879
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 2 cut(s) 435, 557
BshNI GGYRCC 1 cut(s) 880
BsiHKAI GWGCWC 1 cut(s) 678
BsiHKCI CYCGRG 2 cut(s) 193, 894
BslI CCNNNNNNNGG 3 cut(s) 214, 755, 949
BsmI GAATGC 2 cut(s) 226, 570
BsnI GGCC 2 cut(s) 435, 557
BsoBI CYCGRG 2 cut(s) 193, 894
Bsp1286I GDGCHC 1 cut(s) 678
Bsp143I GATC 4 cut(s) 166, 352, 661, 838
Bsp19I CCATGG 1 cut(s) 943
BspACI CCGC 4 cut(s) 553, 781, 842, 851
BspANI GGCC 2 cut(s) 435, 557
BspCNI CTCAG 3 cut(s) 337, 454, 491
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 2 cut(s) 294, 882
BspPI GGATC 2 cut(s) 669, 833
BspQI GCTCTTC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 880
BsrI ACTGG 2 cut(s) 219, 384
BssECI CCNNGG 3 cut(s) 308, 328, 943
BssMI GATC 4 cut(s) 166, 352, 661, 838
BssNI GRCGYC 1 cut(s) 881
BssT1I CCWWGG 1 cut(s) 943
Bst2UI CCWGG 6 cut(s) 226, 309, 330, 738, 825, 938
Bst4CI ACNGT 2 cut(s) 118, 430
Bst6I CTCTTC 1 cut(s) 233
BstACI GRCGYC 1 cut(s) 881
BstC8I GCNNGC 1 cut(s) 555
BstDEI CTNAG 6 cut(s) 129, 345, 441, 478, 968, 1023
BstDSI CCRYGG 1 cut(s) 943
BstF5I GGATG 8 cut(s) 143, 267, 538, 558, 613, 629, 661, 904
BstFNI CGCG 1 cut(s) 18
BstH2I RGCGCY 1 cut(s) 884
BstHHI GCGC 1 cut(s) 883
BstKTI GATC 4 cut(s) 169, 355, 664, 841
BstMBI GATC 4 cut(s) 166, 352, 661, 838
BstMWI GCNNNNNNNGC 4 cut(s) 74, 610, 766, 850
BstNI CCWGG 6 cut(s) 226, 309, 330, 738, 825, 938
BstNSI RCATGY 1 cut(s) 808
BstSCI CCNGG 6 cut(s) 224, 307, 328, 736, 823, 936
BstSFI CTRYAG 1 cut(s) 429
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 473, 872
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 2 cut(s) 352, 661
BstYI RGATCY 2 cut(s) 352, 661
BsuRI GGCC 2 cut(s) 435, 557
BtgI CCRYGG 1 cut(s) 943
BtsCI GGATG 8 cut(s) 143, 267, 538, 558, 613, 629, 661, 904
BtsIMutI CAGTG 2 cut(s) 212, 391
Cac8I GCNNGC 1 cut(s) 555
CaiI CAGNNNCTG 1 cut(s) 314
CfoI GCGC 1 cut(s) 883
Cfr13I GGNCC 2 cut(s) 555, 940
CseI GACGC 1 cut(s) 981
CsiI ACCWGGT 2 cut(s) 823, 936
Csp6I GTAC 1 cut(s) 190
CspCI CAANNNNNGTGG 1 cut(s) 36
CviAII CATG 6 cut(s) 563, 716, 765, 805, 903, 944
CviJI RGCY 9 cut(s) 68, 90, 150, 314, 406, 435, 557, 736, 760
CviKI_1 RGCY 9 cut(s) 68, 90, 150, 314, 406, 435, 557, 736, 760
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 6 cut(s) 129, 345, 441, 478, 968, 1023
DinI GGCGCC 1 cut(s) 882
DpnI GATC 4 cut(s) 168, 354, 663, 840
DpnII GATC 4 cut(s) 166, 352, 661, 838
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 943
Eco147I AGGCCT 1 cut(s) 435
Eco32I GATATC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 940
Eco88I CYCGRG 2 cut(s) 193, 894
EcoRII CCWGG 6 cut(s) 224, 307, 328, 736, 823, 936
EcoRV GATATC 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 943
EcoT22I ATGCAT 1 cut(s) 904
EgeI GGCGCC 1 cut(s) 882
EheI GGCGCC 1 cut(s) 882
ErhI CCWWGG 1 cut(s) 943
FaeI CATG 6 cut(s) 566, 719, 768, 808, 906, 947
FatI CATG 6 cut(s) 562, 715, 764, 804, 902, 943
FauI CCCGC 1 cut(s) 546
FauNDI CATATG 1 cut(s) 921
Fnu4HI GCNGC 2 cut(s) 462, 861
FokI GGATG 8 cut(s) 130, 254, 545, 545, 600, 616, 668, 911
Fsp4HI GCNGC 2 cut(s) 462, 861
FspBI CTAG 2 cut(s) 98, 704
GlaI GCGC 1 cut(s) 882
GluI GCNGC 2 cut(s) 462, 861
GsuI CTGGAG 1 cut(s) 291
HaeII RGCGCY 1 cut(s) 884
HaeIII GGCC 2 cut(s) 435, 557
HgaI GACGC 1 cut(s) 981
HhaI GCGC 1 cut(s) 883
Hin1I GRCGYC 1 cut(s) 881
Hin1II CATG 6 cut(s) 566, 719, 768, 808, 906, 947
Hin6I GCGC 1 cut(s) 881
HinP1I GCGC 1 cut(s) 881
HinfI GANTC 5 cut(s) 79, 136, 341, 347, 925
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 1 cut(s) 802
Hpy188I TCNGA 7 cut(s) 346, 352, 444, 481, 519, 576, 930
Hpy188III TCNNGA 3 cut(s) 617, 896, 956
Hpy8I GTNNAC 1 cut(s) 802
Hpy99I CGWCG 1 cut(s) 369
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 2 cut(s) 118, 430
HpyCH4V TGCA 6 cut(s) 281, 461, 613, 808, 860, 902
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 610, 766, 850
HpyF3I CTNAG 6 cut(s) 129, 345, 441, 478, 968, 1023
Hsp92I GRCGYC 1 cut(s) 881
Hsp92II CATG 6 cut(s) 566, 719, 768, 808, 906, 947
HspAI GCGC 1 cut(s) 881
KasI GGCGCC 1 cut(s) 880
Kzo9I GATC 4 cut(s) 166, 352, 661, 838
LguI GCTCTTC 1 cut(s) 233
LmnI GCTCC 1 cut(s) 673
Lsp1109I GCAGC 2 cut(s) 473, 872
LweI GCATC 5 cut(s) 268, 342, 622, 638, 889
MabI ACCWGGT 2 cut(s) 823, 936
MaeI CTAG 2 cut(s) 98, 704
MaeIII GTNAC 1 cut(s) 418
MalI GATC 4 cut(s) 168, 354, 663, 840
MboI GATC 4 cut(s) 166, 352, 661, 838
MboII GAAGA 4 cut(s) 222, 250, 353, 996
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 2 cut(s) 352, 661
MhlI GDGCHC 1 cut(s) 678
MluCI AATT 3 cut(s) 484, 492, 873
MluI ACGCGT 1 cut(s) 16
Mly113I GGCGCC 1 cut(s) 881
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 4 cut(s) 137, 320, 497, 702
MnlI CCTC 9 cut(s) 45, 175, 315, 382, 652, 682, 779, 808, 976
Mph1103I ATGCAT 1 cut(s) 904
MseI TTAA 4 cut(s) 125, 395, 468, 681
MslI CAYNNNNRTG 2 cut(s) 510, 563
MspR9I CCNGG 6 cut(s) 226, 309, 330, 738, 825, 938
MunI CAATTG 1 cut(s) 492
Mva1269I GAATGC 2 cut(s) 226, 570
MvaI CCWGG 6 cut(s) 226, 309, 330, 738, 825, 938
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 4 cut(s) 74, 610, 766, 850
NarI GGCGCC 1 cut(s) 881
NcoI CCATGG 1 cut(s) 943
NdeI CATATG 1 cut(s) 921
NdeII GATC 4 cut(s) 166, 352, 661, 838
NlaIII CATG 6 cut(s) 566, 719, 768, 808, 906, 947
NlaIV GGNNCC 2 cut(s) 294, 882
NsiI ATGCAT 1 cut(s) 904
NspI RCATGY 1 cut(s) 808
PceI AGGCCT 1 cut(s) 435
PciSI GCTCTTC 1 cut(s) 233
PctI GAATGC 2 cut(s) 226, 570
PfeI GAWTC 4 cut(s) 79, 136, 341, 925
PflFI GACNNNGTC 1 cut(s) 938
PflMI CCANNNNNTGG 2 cut(s) 214, 755
PkrI GCNGC 2 cut(s) 463, 862
PleI GAGTC 1 cut(s) 355
PluTI GGCGCC 1 cut(s) 884
PpsI GAGTC 1 cut(s) 355
Psp6I CCWGG 6 cut(s) 224, 307, 328, 736, 823, 936
PspGI CCWGG 6 cut(s) 224, 307, 328, 736, 823, 936
PspN4I GGNNCC 2 cut(s) 294, 882
PspPI GGNCC 2 cut(s) 555, 940
PsrI GAACNNNNNNTAC 2 cut(s) 182, 214
PstNI CAGNNNCTG 1 cut(s) 314
PsuI RGATCY 2 cut(s) 352, 661
PsyI GACNNNGTC 1 cut(s) 938
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 2 cut(s) 510, 563
SapI GCTCTTC 1 cut(s) 233
SaqAI TTAA 4 cut(s) 125, 395, 468, 681
SatI GCNGC 2 cut(s) 462, 861
Sau3AI GATC 4 cut(s) 166, 352, 661, 838
Sau96I GGNCC 2 cut(s) 555, 940
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 6 cut(s) 226, 309, 330, 738, 825, 938
SduI GDGCHC 1 cut(s) 678
SetI ASST 8 cut(s) 56, 70, 160, 425, 790, 826, 939, 987
SexAI ACCWGGT 2 cut(s) 823, 936
SfaNI GCATC 5 cut(s) 268, 342, 622, 638, 889
SfcI CTRYAG 1 cut(s) 429
SfoI GGCGCC 1 cut(s) 882
SinI GGWCC 1 cut(s) 940
SmiMI CAYNNNNRTG 2 cut(s) 510, 563
SpeI ACTAGT 1 cut(s) 703
Sse9I AATT 3 cut(s) 484, 492, 873
SseBI AGGCCT 1 cut(s) 435
SsiI CCGC 4 cut(s) 553, 781, 842, 851
SspDI GGCGCC 1 cut(s) 880
SspMI CTAG 2 cut(s) 98, 704
StuI AGGCCT 1 cut(s) 435
StyD4I CCNGG 6 cut(s) 224, 307, 328, 736, 823, 936
StyI CCWWGG 1 cut(s) 943
TaaI ACNGT 2 cut(s) 118, 430
TaqI TCGA 1 cut(s) 367
TasI AATT 3 cut(s) 484, 492, 873
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 4 cut(s) 79, 136, 341, 925
Tru1I TTAA 4 cut(s) 125, 395, 468, 681
Tru9I TTAA 4 cut(s) 125, 395, 468, 681
TscAI CASTG 2 cut(s) 219, 391
TseI GCWGC 2 cut(s) 461, 860
TspDTI ATGAA 4 cut(s) 111, 149, 162, 651
TspRI CASTG 2 cut(s) 219, 391
Tth111I GACNNNGTC 1 cut(s) 938
Van91I CCANNNNNTGG 2 cut(s) 214, 755
VpaK11BI GGWCC 1 cut(s) 940
XapI RAATTY 1 cut(s) 484
XceI RCATGY 1 cut(s) 808
XspI CTAG 2 cut(s) 98, 704
ZrmI AGTACT 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.