RLG00000018948

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001946
Physical Location & Seq
Forward (+)
43317561 .. 43319583
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018948

Sequence Viewer

Length: 732 bp
ATGAGTTTTGTTGCGACAGCTTTTGTGGCGATTCTGTTTGGCTTCTTTCTAGGAGTGTCATTTTCAACTATTTTGTTAACTAAGATGAATTTCCCACCAAGCCATTTTTCTTCCATTGATCTTTCATACATAGAGGAGAAGTACTCGGGGTTCTCAACCCAAGCACTGGTGAATGCCTGGTCTTCTTTGAAGAGCAACAGAGATATCTCTGTAAAATACATCCCTAATGATGCAGAGGCAGATTTGGGTTCCAAACAAATCCTCCTTGGCATTGTAGAATCTGAGTCAGATTTATATCTTCATCAATTATGGGGTCTGCCCAGTGAGGACTTAACCATCAAGCCAAAATATCTTGCAACCTTTACCGTAGACCATGCTCAGAAAAAAAAATATAGATGCAGCAAGAATTTCACAATTGTTTTGTTTCACTGTGATGGTCAGACAAGTGAATGGGATGAGTTTGAGAGGTCAAAGCGGGCTATCCACGTGAGCATTCAGAAGCAAACTAAATGGTGGTGTGCCAAGCGTTTTTTGCATCCTGACATTGTGGCATCCTATGAATACATATTAATTTGGGATGAGGATCTCGGTGTGGAGCACTTTAATGCAGAGGAATACATAAAACTAGTAAGGAAATATGGGCTGGAAGTAGCACAGCCTGGTTTAGAACCAAATAATGGGCTAACATGGCAGATGACAAAGGATAGGTGTCATAGTGAAGTTCACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

244

Amino Acids

28.02

Weight (kDa)

5.99

Isoelectric Point (pI)

33.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 82 - 242 2.3e-61 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 166, 677
AccI GTMKAC 1 cut(s) 369
AciI CCGC 1 cut(s) 475
AclWI GGATC 1 cut(s) 591
AcsI RAATTY 2 cut(s) 88, 406
AcvI CACGTG 1 cut(s) 487
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 2 cut(s) 166, 677
AflIII ACRYGT 1 cut(s) 726
AgsI TTSAA 2 cut(s) 66, 190
AhlI ACTAGT 1 cut(s) 625
AjnI CCWGG 2 cut(s) 176, 658
AjuI GAANNNNNNNTTGG 2 cut(s) 91, 123
AluBI AGCT 1 cut(s) 20
AluI AGCT 1 cut(s) 20
Alw21I GWGCWC 1 cut(s) 600
AlwI GGATC 1 cut(s) 591
Ama87I CYCGRG 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 399
ApoI RAATTY 2 cut(s) 88, 406
AseI ATTAAT 1 cut(s) 569
AsuHPI GGTGA 1 cut(s) 181
AvaI CYCGRG 1 cut(s) 145
BbrPI CACGTG 1 cut(s) 487
BbsI GAAGAC 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 600
BbvI GCAGC 1 cut(s) 411
BccI CCATC 2 cut(s) 344, 428
BciT130I CCWGG 2 cut(s) 178, 660
BcuI ACTAGT 1 cut(s) 625
BfaI CTAG 2 cut(s) 50, 626
BisI GCNGC 1 cut(s) 400
BlsI GCNGC 1 cut(s) 401
BmcAI AGTACT 1 cut(s) 143
Bme1390I CCNGG 2 cut(s) 178, 660
BmeT110I CYCGRG 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 2 cut(s) 178, 660
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 4 cut(s) 220, 386, 544, 560
BmuI ACTGGG 1 cut(s) 315
BpiI GAAGAC 1 cut(s) 174
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BsaAI YACGTR 1 cut(s) 487
BsaBI GATNNNNATC 2 cut(s) 294, 582
BsaJI CCNNGG 1 cut(s) 265
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 677
Bse1I ACTGG 2 cut(s) 171, 321
Bse8I GATNNNNATC 2 cut(s) 294, 582
BseBI CCWGG 2 cut(s) 178, 660
BseDI CCNNGG 1 cut(s) 265
BseGI GGATG 5 cut(s) 219, 460, 535, 551, 583
BseJI GATNNNNATC 2 cut(s) 294, 582
BseLI CCNNNNNNNGG 2 cut(s) 166, 677
BseMII CTCAG 2 cut(s) 273, 392
BseNI ACTGG 2 cut(s) 171, 321
BseRI GAGGAG 1 cut(s) 149
BseXI GCAGC 1 cut(s) 411
BsiHKAI GWGCWC 1 cut(s) 600
BsiHKCI CYCGRG 1 cut(s) 145
BslI CCNNNNNNNGG 2 cut(s) 166, 677
BsmI GAATGC 2 cut(s) 178, 492
BsoBI CYCGRG 1 cut(s) 145
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 2 cut(s) 118, 583
BspACI CCGC 1 cut(s) 475
BspCNI CTCAG 2 cut(s) 274, 391
BspLI GGNNCC 1 cut(s) 250
BspPI GGATC 1 cut(s) 591
BspQI GCTCTTC 1 cut(s) 185
BsrI ACTGG 2 cut(s) 171, 321
BssECI CCNNGG 1 cut(s) 265
BssMI GATC 2 cut(s) 118, 583
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 2 cut(s) 178, 660
Bst4CI ACNGT 2 cut(s) 367, 431
Bst6I CTCTTC 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 487
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 3 cut(s) 81, 282, 378
BstF5I GGATG 5 cut(s) 219, 460, 535, 551, 583
BstKTI GATC 2 cut(s) 121, 586
BstMBI GATC 2 cut(s) 118, 583
BstMWI GCNNNNNNNGC 3 cut(s) 26, 532, 688
BstNI CCWGG 2 cut(s) 178, 660
BstNSI RCATGY 1 cut(s) 730
BstSCI CCNGG 2 cut(s) 176, 658
BstV1I GCAGC 1 cut(s) 411
BstV2I GAAGAC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 583
BstYI RGATCY 1 cut(s) 583
BtsCI GGATG 5 cut(s) 219, 460, 535, 551, 583
BtsIMutI CAGTG 3 cut(s) 164, 328, 427
Cac8I GCNNGC 1 cut(s) 477
Csp6I GTAC 1 cut(s) 142
CviAII CATG 3 cut(s) 374, 687, 727
CviJI RGCY 8 cut(s) 20, 42, 102, 343, 479, 643, 658, 682
CviKI_1 RGCY 8 cut(s) 20, 42, 102, 343, 479, 643, 658, 682
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 3 cut(s) 81, 282, 378
DpnI GATC 2 cut(s) 120, 585
DpnII GATC 2 cut(s) 118, 583
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Eco130I CCWWGG 1 cut(s) 265
Eco32I GATATC 1 cut(s) 205
Eco72I CACGTG 1 cut(s) 487
Eco88I CYCGRG 1 cut(s) 145
EcoRII CCWGG 2 cut(s) 176, 658
EcoRV GATATC 1 cut(s) 205
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 3 cut(s) 377, 690, 730
FatI CATG 3 cut(s) 373, 686, 726
FauI CCCGC 1 cut(s) 468
FblI GTMKAC 1 cut(s) 369
Fnu4HI GCNGC 1 cut(s) 400
FokI GGATG 5 cut(s) 206, 467, 522, 538, 590
Fsp4HI GCNGC 1 cut(s) 400
FspBI CTAG 2 cut(s) 50, 626
GluI GCNGC 1 cut(s) 400
Hin1II CATG 3 cut(s) 377, 690, 730
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HinfI GANTC 3 cut(s) 31, 278, 284
HpaI GTTAAC 1 cut(s) 78
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 3 cut(s) 78, 370, 724
Hpy188I TCNGA 5 cut(s) 283, 289, 381, 441, 498
Hpy188III TCNNGA 1 cut(s) 539
Hpy8I GTNNAC 3 cut(s) 78, 370, 724
HpyCH4III ACNGT 2 cut(s) 367, 431
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 5 cut(s) 233, 356, 399, 535, 608
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 532, 688
HpyF3I CTNAG 3 cut(s) 81, 282, 378
HpySE526I ACGT 1 cut(s) 486
Hsp92II CATG 3 cut(s) 377, 690, 730
KspAI GTTAAC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 118, 583
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 1 cut(s) 595
LpnPI CCDG 8 cut(s) 152, 163, 190, 334, 552, 629, 645, 672
Lsp1109I GCAGC 1 cut(s) 411
LweI GCATC 4 cut(s) 220, 386, 544, 560
MaeI CTAG 2 cut(s) 50, 626
MaeII ACGT 1 cut(s) 486
MalI GATC 2 cut(s) 120, 585
MboI GATC 2 cut(s) 118, 583
MboII GAAGA 4 cut(s) 102, 174, 202, 290
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 1 cut(s) 583
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 5 cut(s) 88, 305, 406, 414, 570
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 7 cut(s) 127, 229, 272, 319, 459, 574, 604
MseI TTAA 4 cut(s) 77, 332, 569, 603
MslI CAYNNNNRTG 2 cut(s) 432, 603
MspR9I CCNGG 2 cut(s) 178, 660
MunI CAATTG 1 cut(s) 414
Mva1269I GAATGC 2 cut(s) 178, 492
MvaI CCWGG 2 cut(s) 178, 660
MwoI GCNNNNNNNGC 3 cut(s) 26, 532, 688
NdeII GATC 2 cut(s) 118, 583
NlaIII CATG 3 cut(s) 377, 690, 730
NlaIV GGNNCC 1 cut(s) 250
NspI RCATGY 1 cut(s) 730
PciI ACATGT 1 cut(s) 726
PciSI GCTCTTC 1 cut(s) 185
PctI GAATGC 2 cut(s) 178, 492
PfeI GAWTC 2 cut(s) 31, 278
PflMI CCANNNNNTGG 2 cut(s) 166, 677
PkrI GCNGC 1 cut(s) 401
PleI GAGTC 1 cut(s) 292
PmaCI CACGTG 1 cut(s) 487
PmlI CACGTG 1 cut(s) 487
PpsI GAGTC 1 cut(s) 292
Ppu21I YACGTR 1 cut(s) 487
PscI ACATGT 1 cut(s) 726
PshBI ATTAAT 1 cut(s) 569
Psp6I CCWGG 2 cut(s) 176, 658
PspCI CACGTG 1 cut(s) 487
PspGI CCWGG 2 cut(s) 176, 658
PspN4I GGNNCC 1 cut(s) 250
PsrI GAACNNNNNNTAC 2 cut(s) 134, 166
PsuI RGATCY 1 cut(s) 583
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 2 cut(s) 432, 603
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 4 cut(s) 77, 332, 569, 603
SatI GCNGC 1 cut(s) 400
Sau3AI GATC 2 cut(s) 118, 583
ScaI AGTACT 1 cut(s) 143
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 2 cut(s) 178, 660
SduI GDGCHC 1 cut(s) 600
SetI ASST 5 cut(s) 22, 362, 470, 489, 710
SfaNI GCATC 4 cut(s) 220, 386, 544, 560
SmiMI CAYNNNNRTG 2 cut(s) 432, 603
SpeI ACTAGT 1 cut(s) 625
Sse9I AATT 5 cut(s) 88, 305, 406, 414, 570
SsiI CCGC 1 cut(s) 475
SspMI CTAG 2 cut(s) 50, 626
StyD4I CCNGG 2 cut(s) 176, 658
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 2 cut(s) 367, 431
TaiI ACGT 1 cut(s) 489
TasI AATT 5 cut(s) 88, 305, 406, 414, 570
TatI WGTACW 1 cut(s) 141
TfiI GAWTC 2 cut(s) 31, 278
Tru1I TTAA 4 cut(s) 77, 332, 569, 603
Tru9I TTAA 4 cut(s) 77, 332, 569, 603
TscAI CASTG 3 cut(s) 171, 328, 434
TseI GCWGC 1 cut(s) 399
TspDTI ATGAA 4 cut(s) 101, 114, 290, 573
TspRI CASTG 3 cut(s) 171, 328, 434
Van91I CCANNNNNTGG 2 cut(s) 166, 677
VspI ATTAAT 1 cut(s) 569
XapI RAATTY 2 cut(s) 88, 406
XceI RCATGY 1 cut(s) 730
XmiI GTMKAC 1 cut(s) 369
XspI CTAG 2 cut(s) 50, 626
ZrmI AGTACT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.