Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010961.1

Orthogroup ID

OG0001946

Physical Location & Seq

Genomic Coordinates Forward (+)

9982 .. 14617

Gene Structure 4636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010961.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atgggcagtcccacacgcgttgggaatataagaaaacccaaagagaaaatgaggtttgttgcgacggcttttgtggcgattctgtttggcttctttctaggagtgtcatttccaacggtttcgttaactaagatgaatctcccatccagccttttaccttccattgatctttcatacatagaggacaagtactcggggttctcaacccaagcactggtgaatgcctggtcttctttgaagagcaacagagatatctctgtaaaacacatccctaatgatgcaaagatttgggttccaacaaatcctccaggggctgaaagactaccccctggcatcgtagaatctgagtcagatctatatcttcgtcgattatggggtctgcccagtgaggacttaaccatcaagccaaagtatcttgtaacctttactgtaggccttgctcagaaacaaaatataaatgcagcagttaaaaagttctcagagaatttcacaattgttttatttcactatgatggtcggacaagtgaatgggatgagtttgagtggtcaaagcgggccatccatgtgagcagtcggaagcaaactaaatggtggtatgccaagcgttttttgcatcctgacattgtggcatcctatgaatacatatttatttgggatgaggatctcggtgtggagcactttaacgcagaggaatacataaaactagtaaggaaacatgggttggaaatatcacagcctggtttagaaccaaataatgggctaacatggcagatgacaaagcggagaggtcatagtgaagttcacatgcagacagaggagaaacctggttggtgtaatgatccgcatttgccgccctgtgcagcgtttgtagaaattatggcgcctgtattttctcaggatgcatggcgttgtgtttggcatatgattcagaatgacctggtccatggttggggtctggattttgctcttagacgctgtgtagagcctgctcatgagaaaataggagttgtagatgcacagtggattgtccatcaaggtgttccttcacttggaaaccaggggcaagcagggagtgggagagcgccatgggaagggagggagcatattttgaagaaatgggaattgatcccccaaattcaacagcacgttagggggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

385

Amino Acids

44.08

Weight (kDa)

8.23

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27470 AT3G27470 AT3G27470 AT3G27470 AT3G27470
fragaria_vesca	FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770
malus_domestica	MD09G1022800.v1.1 MD17G1022000.v1.1
prunus_persica	Prupe.3G294100_v2.0.a1 Prupe.3G294100_v2.0.a1 Prupe.3G294100_v2.0.a1 Prupe.3G294100_v2.0.a1
pyrus_communis	pycom111g01910 pycom17g01910
rosa_chinensis	RchiOBHm_Chr2g0127631 RchiOBHm_Chr2g0173331
rosa_laevigata	RLG00000018948 RLG00000022179
rosa_multiflora	Rmu_co8312885.1_g000001 Rmu_sc0010961.1_g000004 Rmu_sc0033776.1_g000002 Rmu_ssc0000200.1_g000010
rosa_roxburghii	Rroxscaffold_2G00079050 Rroxscaffold_2G00116590 Rroxscaffold_2G00116600
rosa_rugosa	Rorug02G0272400 Rorug02G0567400 Rorug02G0567500
rosa_samantha	Rh2AG324300 Rh2AG647700 Rh2BG658200 Rh2CG311800 Rh2CG623700 Rh2DG351800 Rh2DG672000
rosa_wichuraiana	Rw2G026330 Rw2G053170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	880
AccB7I	CCANNNNNTGG	2 cut(s)	214, 755
AccII	CGCG	1 cut(s)	18
AciI	CCGC	4 cut(s)	553, 781, 842, 851
AclWI	GGATC	3 cut(s)	669, 833, 1120
AcsI	RAATTY	2 cut(s)	484, 1134
AcyI	GRCGYC	1 cut(s)	881
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	5 cut(s)	214, 755, 949, 1049, 1091
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	3 cut(s)	238, 1111, 1139
AhlI	ACTAGT	1 cut(s)	703
AjnI	CCWGG	7 cut(s)	224, 307, 328, 736, 823, 936, 1056
AjuI	GAANNNNNNNTTGG	2 cut(s)	704, 736
Alw21I	GWGCWC	1 cut(s)	678
AlwI	GGATC	3 cut(s)	669, 833, 1120
AlwNI	CAGNNNCTG	1 cut(s)	314
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	2 cut(s)	433, 555
ApeKI	GCWGC	2 cut(s)	461, 860
ApoI	RAATTY	2 cut(s)	484, 1134
AspLEI	GCGC	2 cut(s)	883, 1084
AspS9I	GGNCC	2 cut(s)	555, 940
AsuHPI	GGTGA	1 cut(s)	229
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	940
BanI	GGYRCC	1 cut(s)	880
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	678
BbvI	GCAGC	2 cut(s)	473, 872
BccI	CCATC	5 cut(s)	151, 407, 506, 566, 1038
BceAI	ACGGC	1 cut(s)	81
BciT130I	CCWGG	7 cut(s)	226, 309, 330, 738, 825, 938, 1058
BcuI	ACTAGT	1 cut(s)	703
BfaI	CTAG	2 cut(s)	98, 704
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	2 cut(s)	884, 1085
BglII	AGATCT	1 cut(s)	352
BisI	GCNGC	3 cut(s)	462, 851, 861
BlsI	GCNGC	3 cut(s)	463, 852, 862
BmcAI	AGTACT	1 cut(s)	191
Bme1390I	CCNGG	7 cut(s)	226, 309, 330, 738, 825, 938, 1058
Bme18I	GGWCC	1 cut(s)	940
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	555, 940
BmiI	GGNNCC	2 cut(s)	294, 882
BmrFI	CCNGG	7 cut(s)	226, 309, 330, 738, 825, 938, 1058
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	6 cut(s)	268, 342, 622, 638, 889, 1003
BmuI	ACTGGG	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	222
BpmI	CTGGAG	1 cut(s)	291
BsaBI	GATNNNNATC	2 cut(s)	357, 660
BsaHI	GRCGYC	1 cut(s)	881
BsaJI	CCNNGG	5 cut(s)	308, 328, 943, 1057, 1085
BsaXI	ACNNNNNCTCC	2 cut(s)	289, 319
Bsc4I	CCNNNNNNNGG	5 cut(s)	214, 755, 949, 1049, 1091
Bse1I	ACTGG	2 cut(s)	219, 384
Bse8I	GATNNNNATC	2 cut(s)	357, 660
BseBI	CCWGG	7 cut(s)	226, 309, 330, 738, 825, 938, 1058
BseDI	CCNNGG	5 cut(s)	308, 328, 943, 1057, 1085
BseGI	GGATG	8 cut(s)	143, 267, 538, 558, 613, 629, 661, 904
BseJI	GATNNNNATC	2 cut(s)	357, 660
BseLI	CCNNNNNNNGG	5 cut(s)	214, 755, 949, 1049, 1091
BseMII	CTCAG	4 cut(s)	336, 455, 492, 908
BseNI	ACTGG	2 cut(s)	219, 384
BseRI	GAGGAG	1 cut(s)	830
BseXI	GCAGC	2 cut(s)	473, 872
BsgI	GTGCAG	1 cut(s)	879
Bsh1236I	CGCG	1 cut(s)	18
BshFI	GGCC	2 cut(s)	435, 557
BshNI	GGYRCC	1 cut(s)	880
BsiHKAI	GWGCWC	1 cut(s)	678
BsiHKCI	CYCGRG	1 cut(s)	193
BslI	CCNNNNNNNGG	5 cut(s)	214, 755, 949, 1049, 1091
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	435, 557
BsoBI	CYCGRG	1 cut(s)	193
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp143I	GATC	5 cut(s)	166, 352, 661, 838, 1125
Bsp19I	CCATGG	2 cut(s)	943, 1085
BspACI	CCGC	4 cut(s)	553, 781, 842, 851
BspANI	GGCC	2 cut(s)	435, 557
BspCNI	CTCAG	4 cut(s)	337, 454, 491, 907
BspFNI	CGCG	1 cut(s)	18
BspHI	TCATGA	1 cut(s)	991
BspLI	GGNNCC	2 cut(s)	294, 882
BspPI	GGATC	3 cut(s)	669, 833, 1120
BspQI	GCTCTTC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	880
BsrI	ACTGG	2 cut(s)	219, 384
BssECI	CCNNGG	5 cut(s)	308, 328, 943, 1057, 1085
BssMI	GATC	5 cut(s)	166, 352, 661, 838, 1125
BssNI	GRCGYC	1 cut(s)	881
BssT1I	CCWWGG	2 cut(s)	943, 1085
Bst2UI	CCWGG	7 cut(s)	226, 309, 330, 738, 825, 938, 1058
Bst4CI	ACNGT	3 cut(s)	118, 430, 1020
Bst6I	CTCTTC	1 cut(s)	233
BstACI	GRCGYC	1 cut(s)	881
BstC8I	GCNNGC	3 cut(s)	555, 987, 1065
BstDEI	CTNAG	6 cut(s)	129, 345, 441, 478, 894, 968
BstDSI	CCRYGG	2 cut(s)	943, 1085
BstF5I	GGATG	8 cut(s)	143, 267, 538, 558, 613, 629, 661, 904
BstFNI	CGCG	1 cut(s)	18
BstH2I	RGCGCY	2 cut(s)	884, 1085
BstHHI	GCGC	2 cut(s)	883, 1084
BstKTI	GATC	5 cut(s)	169, 355, 664, 841, 1128
BstMBI	GATC	5 cut(s)	166, 352, 661, 838, 1125
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 610, 766, 850
BstNI	CCWGG	7 cut(s)	226, 309, 330, 738, 825, 938, 1058
BstNSI	RCATGY	1 cut(s)	808
BstSCI	CCNGG	7 cut(s)	224, 307, 328, 736, 823, 936, 1056
BstSFI	CTRYAG	1 cut(s)	429
BstUI	CGCG	1 cut(s)	18
BstV1I	GCAGC	2 cut(s)	473, 872
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	2 cut(s)	352, 661
BstYI	RGATCY	2 cut(s)	352, 661
BsuRI	GGCC	2 cut(s)	435, 557
BtgI	CCRYGG	2 cut(s)	943, 1085
BtsCI	GGATG	8 cut(s)	143, 267, 538, 558, 613, 629, 661, 904
BtsIMutI	CAGTG	3 cut(s)	212, 391, 1025
Cac8I	GCNNGC	3 cut(s)	555, 987, 1065
CaiI	CAGNNNCTG	1 cut(s)	314
CciI	TCATGA	1 cut(s)	991
CfoI	GCGC	2 cut(s)	883, 1084
Cfr13I	GGNCC	2 cut(s)	555, 940
CseI	GACGC	1 cut(s)	981
CsiI	ACCWGGT	2 cut(s)	823, 936
Csp6I	GTAC	1 cut(s)	190
CspCI	CAANNNNNGTGG	1 cut(s)	36
CviAII	CATG	8 cut(s)	563, 716, 765, 805, 903, 944, 992, 1086
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	6 cut(s)	129, 345, 441, 478, 894, 968
DinI	GGCGCC	1 cut(s)	882
DpnI	GATC	5 cut(s)	168, 354, 663, 840, 1127
DpnII	GATC	5 cut(s)	166, 352, 661, 838, 1125
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco130I	CCWWGG	2 cut(s)	943, 1085
Eco147I	AGGCCT	1 cut(s)	435
Eco32I	GATATC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	940
Eco88I	CYCGRG	1 cut(s)	193
EcoRII	CCWGG	7 cut(s)	224, 307, 328, 736, 823, 936, 1056
EcoRV	GATATC	1 cut(s)	253
EcoT14I	CCWWGG	2 cut(s)	943, 1085
EcoT22I	ATGCAT	1 cut(s)	904
EgeI	GGCGCC	1 cut(s)	882
EheI	GGCGCC	1 cut(s)	882
ErhI	CCWWGG	2 cut(s)	943, 1085
FaeI	CATG	8 cut(s)	566, 719, 768, 808, 906, 947, 995, 1089
FatI	CATG	8 cut(s)	562, 715, 764, 804, 902, 943, 991, 1085
FauI	CCCGC	1 cut(s)	546
FauNDI	CATATG	1 cut(s)	921
Fnu4HI	GCNGC	3 cut(s)	462, 851, 861
FokI	GGATG	8 cut(s)	130, 254, 545, 545, 600, 616, 668, 911
Fsp4HI	GCNGC	3 cut(s)	462, 851, 861
FspBI	CTAG	2 cut(s)	98, 704
GlaI	GCGC	2 cut(s)	882, 1083
GluI	GCNGC	3 cut(s)	462, 851, 861
GsuI	CTGGAG	1 cut(s)	291
HaeII	RGCGCY	2 cut(s)	884, 1085
HaeIII	GGCC	2 cut(s)	435, 557
HgaI	GACGC	1 cut(s)	981
HhaI	GCGC	2 cut(s)	883, 1084
Hin1I	GRCGYC	1 cut(s)	881
Hin1II	CATG	8 cut(s)	566, 719, 768, 808, 906, 947, 995, 1089
Hin6I	GCGC	2 cut(s)	881, 1082
HinP1I	GCGC	2 cut(s)	881, 1082
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	5 cut(s)	79, 136, 341, 347, 925
HpaI	GTTAAC	1 cut(s)	126
HphI	GGTGA	1 cut(s)	229
Hpy166II	GTNNAC	2 cut(s)	126, 802
Hpy188I	TCNGA	7 cut(s)	346, 352, 444, 481, 519, 576, 930
Hpy188III	TCNNGA	4 cut(s)	617, 896, 956, 992
Hpy8I	GTNNAC	2 cut(s)	126, 802
Hpy99I	CGWCG	2 cut(s)	67, 369
HpyAV	CCTTC	3 cut(s)	168, 1053, 1085
HpyCH4III	ACNGT	3 cut(s)	118, 430, 1020
HpyCH4IV	ACGT	1 cut(s)	1146
HpyCH4V	TGCA	7 cut(s)	281, 461, 613, 808, 860, 902, 1016
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 610, 766, 850
HpyF3I	CTNAG	6 cut(s)	129, 345, 441, 478, 894, 968
HpySE526I	ACGT	1 cut(s)	1146
Hsp92I	GRCGYC	1 cut(s)	881
Hsp92II	CATG	8 cut(s)	566, 719, 768, 808, 906, 947, 995, 1089
HspAI	GCGC	2 cut(s)	881, 1082
KasI	GGCGCC	1 cut(s)	880
KspAI	GTTAAC	1 cut(s)	126
Kzo9I	GATC	5 cut(s)	166, 352, 661, 838, 1125
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	2 cut(s)	673, 1099
Lsp1109I	GCAGC	2 cut(s)	473, 872
LweI	GCATC	6 cut(s)	268, 342, 622, 638, 889, 1003
MabI	ACCWGGT	2 cut(s)	823, 936
MaeI	CTAG	2 cut(s)	98, 704
MaeII	ACGT	1 cut(s)	1146
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	5 cut(s)	168, 354, 663, 840, 1127
MboI	GATC	5 cut(s)	166, 352, 661, 838, 1125
MboII	GAAGA	4 cut(s)	222, 250, 353, 1123
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	2 cut(s)	352, 661
MhlI	GDGCHC	1 cut(s)	678
MluCI	AATT	5 cut(s)	484, 492, 873, 1121, 1134
MluI	ACGCGT	1 cut(s)	16
Mly113I	GGCGCC	1 cut(s)	881
MlyI	GAGTC	1 cut(s)	356
MmeI	TCCRAC	5 cut(s)	137, 320, 497, 554, 702
MnlI	CCTC	9 cut(s)	45, 175, 315, 382, 652, 682, 779, 808, 1089
Mph1103I	ATGCAT	1 cut(s)	904
MseI	TTAA	4 cut(s)	125, 395, 468, 681
MslI	CAYNNNNRTG	3 cut(s)	510, 563, 1035
MspR9I	CCNGG	7 cut(s)	226, 309, 330, 738, 825, 938, 1058
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	7 cut(s)	226, 309, 330, 738, 825, 938, 1058
MvnI	CGCG	1 cut(s)	18
MwoI	GCNNNNNNNGC	4 cut(s)	74, 610, 766, 850
NarI	GGCGCC	1 cut(s)	881
NcoI	CCATGG	2 cut(s)	943, 1085
NdeI	CATATG	1 cut(s)	921
NdeII	GATC	5 cut(s)	166, 352, 661, 838, 1125
NlaIII	CATG	8 cut(s)	566, 719, 768, 808, 906, 947, 995, 1089
NlaIV	GGNNCC	2 cut(s)	294, 882
NsiI	ATGCAT	1 cut(s)	904
NspI	RCATGY	1 cut(s)	808
PagI	TCATGA	1 cut(s)	991
PceI	AGGCCT	1 cut(s)	435
PciSI	GCTCTTC	1 cut(s)	233
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	4 cut(s)	79, 136, 341, 925
PflFI	GACNNNGTC	1 cut(s)	938
PflMI	CCANNNNNTGG	2 cut(s)	214, 755
PkrI	GCNGC	3 cut(s)	463, 852, 862
PleI	GAGTC	1 cut(s)	355
PluTI	GGCGCC	1 cut(s)	884
PpsI	GAGTC	1 cut(s)	355
Psp6I	CCWGG	7 cut(s)	224, 307, 328, 736, 823, 936, 1056
PspGI	CCWGG	7 cut(s)	224, 307, 328, 736, 823, 936, 1056
PspN4I	GGNNCC	2 cut(s)	294, 882
PspPI	GGNCC	2 cut(s)	555, 940
PsrI	GAACNNNNNNTAC	2 cut(s)	182, 214
PstNI	CAGNNNCTG	1 cut(s)	314
PsuI	RGATCY	2 cut(s)	352, 661
PsyI	GACNNNGTC	1 cut(s)	938
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	3 cut(s)	510, 563, 1035
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	4 cut(s)	125, 395, 468, 681
SatI	GCNGC	3 cut(s)	462, 851, 861
Sau3AI	GATC	5 cut(s)	166, 352, 661, 838, 1125
Sau96I	GGNCC	2 cut(s)	555, 940
ScaI	AGTACT	1 cut(s)	191
SchI	GAGTC	1 cut(s)	356
ScrFI	CCNGG	7 cut(s)	226, 309, 330, 738, 825, 938, 1058
SduI	GDGCHC	1 cut(s)	678
SetI	ASST	8 cut(s)	56, 160, 425, 790, 826, 939, 1039, 1149
SexAI	ACCWGGT	2 cut(s)	823, 936
SfaNI	GCATC	6 cut(s)	268, 342, 622, 638, 889, 1003
SfcI	CTRYAG	1 cut(s)	429
SfoI	GGCGCC	1 cut(s)	882
SinI	GGWCC	1 cut(s)	940
SmiMI	CAYNNNNRTG	3 cut(s)	510, 563, 1035
SpeI	ACTAGT	1 cut(s)	703
Sse9I	AATT	5 cut(s)	484, 492, 873, 1121, 1134
SseBI	AGGCCT	1 cut(s)	435
SsiI	CCGC	4 cut(s)	553, 781, 842, 851
SspDI	GGCGCC	1 cut(s)	880
SspMI	CTAG	2 cut(s)	98, 704
StuI	AGGCCT	1 cut(s)	435
StyD4I	CCNGG	7 cut(s)	224, 307, 328, 736, 823, 936, 1056
StyI	CCWWGG	2 cut(s)	943, 1085
TaaI	ACNGT	3 cut(s)	118, 430, 1020
TaiI	ACGT	1 cut(s)	1149
TaqI	TCGA	1 cut(s)	367
TasI	AATT	5 cut(s)	484, 492, 873, 1121, 1134
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	853
TfiI	GAWTC	4 cut(s)	79, 136, 341, 925
Tru1I	TTAA	4 cut(s)	125, 395, 468, 681
Tru9I	TTAA	4 cut(s)	125, 395, 468, 681
TscAI	CASTG	3 cut(s)	219, 391, 1025
TseI	GCWGC	2 cut(s)	461, 860
TspDTI	ATGAA	3 cut(s)	149, 162, 651
TspRI	CASTG	3 cut(s)	219, 391, 1025
Tth111I	GACNNNGTC	1 cut(s)	938
Van91I	CCANNNNNTGG	2 cut(s)	214, 755
VpaK11BI	GGWCC	1 cut(s)	940
XapI	RAATTY	2 cut(s)	484, 1134
XceI	RCATGY	1 cut(s)	808
XspI	CTAG	2 cut(s)	98, 704
ZrmI	AGTACT	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	904

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.