MD17G1022000.v1.1

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0001946
Physical Location & Seq
Forward (+)
1635857 .. 1639622
3766 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1022000.v1.1.491

Sequence Viewer

Length: 1206 bp
ATGGTGTCTCCCATACGCAAAAATTTGAGAAACCCTAATGAGACAATGAGGCTTGTGGTGACTATCTTTGTTGGAGTTGTAATCGGATTCTTTTTAGGAGTATCTTTTCCAACACTTTCGTTGACTAAGATGAATCTTCCTTCCACCCTTTTCCCTTCGATTGATCTTTCGTACATAGAGGAAAAGTACTCTGGGTTTTCAACCCAAGCACTGTTGAATGCCTGGTCTTCTTTGAAGGGAAACGAAGTGCGCACTGAAAAATATGTATCCCAGGAGACAAAGATTTGGGTTCCAACTAATCCTCGAGGGGCTGAAAGCCTACCGCCTGGTATCATTGCATCTGAGTCGGATTTCTATCTTCGCCGACTATGGGGCCTGCCCAGTGAGGACTTACTTGTCAAGCCAAAGTATCTTGTAACCTTTACCGTAGGTTATGCTCAGAAAAAAAATGTTGATGCAGCTGTTAAAAAGTTTTCAGAGAATTTCACCATACTCTTGTTTCACTATGATGGTTTGACAAGTGAATGGGATGAATTTGAATGGTCGAAGCGGGCTATCCATGTGAGCATTCCGAAGCAAACAAAATGGTGGTATGCCAAGCGGTTTTTGCATCCTGACATTGTGGCACCCTACGAGTACATATTTATTTGGGATGAGGATCTCGGTTTGGAGCACTTTAATGCAGAGAAATACATAAAGTTGGTCAAGAAACATGGTTTGGAAATATCACAGCCTGGTTTGGAACCAAATAGCGGGCTAACATGGCAGATGACAAAGCGGAGAGGTGATAGTGAAGTTCACATGCAGACAGAGGAGAAACCTGGTTGGTGCAACGATCCGCATTTGCCACCATGTGCAGCGTTTGTTGAAATTATGGCACCTGTGTTCTCTCGTGACGCATGGCGTTGTGTTTGGCATATGATTCAGAATGACCTGGTCCATGGCTGGGGTCTGGATTTTGCTCTTAGACATTGCGTAGAGCCTGCACATAAGAAAATAGGAGTCGTGGATGCGCAGTGGATTGTCCATCAAGGCGTTCCTTCACTCGGGAACCAAGGGAAAGCGGAGGATGGAAGAGCGCCGTGGGAAGGGGTAAGGGAGAGGTGCAGAAGAGAATGGACAATGTTTCGAGCACGAATGGCGAGCGCCGAGAAAGCATATTTTGAGGAAATGGGAATTGATCCTCCAAATACAACAGCTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

402

Amino Acids

46.11

Weight (kDa)

6.9

Isoelectric Point (pI)

39.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 99 - 385 6.1e-141 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 395
AbsI CCTCGAGG 1 cut(s) 303
Acc16I TGCGCA 2 cut(s) 251, 1014
AccB1I GGYRCC 2 cut(s) 625, 877
AciI CCGC 7 cut(s) 323, 550, 601, 753, 778, 839, 1064
AclWI GGATC 3 cut(s) 666, 830, 1175
AcsI RAATTY 3 cut(s) 22, 481, 533
AdeI CACNNNGTG 1 cut(s) 854
AfaI GTAC 3 cut(s) 173, 188, 638
AfiI CCNNNNNNNGG 5 cut(s) 370, 752, 946, 1046, 1088
AgsI TTSAA 5 cut(s) 201, 217, 235, 539, 869
AjnI CCWGG 6 cut(s) 221, 270, 325, 733, 820, 933
AjuI GAANNNNNNNTTGG 2 cut(s) 701, 733
AluBI AGCT 2 cut(s) 461, 1199
AluI AGCT 2 cut(s) 461, 1199
Alw21I GWGCWC 2 cut(s) 675, 1135
Alw26I GTCTC 3 cut(s) 12, 35, 269
AlwI GGATC 3 cut(s) 666, 830, 1175
Ama87I CYCGRG 2 cut(s) 303, 1046
AoxI GGCC 1 cut(s) 373
ApeKI GCWGC 2 cut(s) 458, 857
ApoI RAATTY 3 cut(s) 22, 481, 533
AspLEI GCGC 4 cut(s) 252, 1015, 1081, 1148
AspS9I GGNCC 2 cut(s) 373, 937
AsuHPI GGTGA 3 cut(s) 70, 478, 797
AvaI CYCGRG 2 cut(s) 303, 1046
AvaII GGWCC 1 cut(s) 937
BanI GGYRCC 2 cut(s) 625, 877
BauI CACGAG 1 cut(s) 891
BbsI GAAGAC 1 cut(s) 219
Bbv12I GWGCWC 2 cut(s) 675, 1135
BbvI GCAGC 2 cut(s) 470, 869
BccI CCATC 3 cut(s) 503, 1035, 1064
BceAI ACGGC 1 cut(s) 1066
BcgI CGANNNNNNTGC 2 cut(s) 327, 361
BciT130I CCWGG 6 cut(s) 223, 272, 327, 735, 822, 935
BciVI GTATCC 1 cut(s) 277
BcoDI GTCTC 3 cut(s) 12, 35, 269
BfoI RGCGCY 2 cut(s) 1082, 1149
BfuI GTATCC 1 cut(s) 277
BisI GCNGC 2 cut(s) 459, 858
BlsI GCNGC 2 cut(s) 460, 859
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 6 cut(s) 223, 272, 327, 735, 822, 935
Bme18I GGWCC 1 cut(s) 937
BmeT110I CYCGRG 2 cut(s) 303, 1046
BmgT120I GGNCC 2 cut(s) 373, 937
BmiI GGNNCC 6 cut(s) 291, 374, 627, 744, 879, 1052
BmrFI CCNGG 6 cut(s) 223, 272, 327, 735, 822, 935
BmrI ACTGGG 1 cut(s) 375
BmsI GCATC 4 cut(s) 347, 445, 619, 1000
BmuI ACTGGG 1 cut(s) 375
BpiI GAAGAC 1 cut(s) 219
BsaBI GATNNNNATC 2 cut(s) 354, 657
BsaJI CCNNGG 4 cut(s) 270, 940, 1054, 1082
Bsc4I CCNNNNNNNGG 5 cut(s) 370, 752, 946, 1046, 1088
Bse1I ACTGG 1 cut(s) 381
Bse3DI GCAATG 2 cut(s) 333, 970
Bse8I GATNNNNATC 2 cut(s) 354, 657
BseBI CCWGG 6 cut(s) 223, 272, 327, 735, 822, 935
BseDI CCNNGG 4 cut(s) 270, 940, 1054, 1082
BseGI GGATG 5 cut(s) 535, 610, 658, 1015, 1075
BseJI GATNNNNATC 2 cut(s) 354, 657
BseLI CCNNNNNNNGG 5 cut(s) 370, 752, 946, 1046, 1088
BseMI GCAATG 2 cut(s) 333, 970
BseMII CTCAG 2 cut(s) 333, 452
BseNI ACTGG 1 cut(s) 381
BseRI GAGGAG 1 cut(s) 827
BseXI GCAGC 2 cut(s) 470, 869
BseYI CCCAGC 1 cut(s) 945
BsgI GTGCAG 3 cut(s) 876, 969, 1126
BshFI GGCC 1 cut(s) 375
BshNI GGYRCC 2 cut(s) 625, 877
BsiHKAI GWGCWC 2 cut(s) 675, 1135
BsiHKCI CYCGRG 2 cut(s) 303, 1046
BslI CCNNNNNNNGG 5 cut(s) 370, 752, 946, 1046, 1088
BsmAI GTCTC 3 cut(s) 12, 35, 269
BsmI GAATGC 2 cut(s) 223, 567
BsnI GGCC 1 cut(s) 375
BsoBI CYCGRG 2 cut(s) 303, 1046
Bsp1286I GDGCHC 2 cut(s) 675, 1135
Bsp143I GATC 4 cut(s) 163, 658, 835, 1180
Bsp19I CCATGG 1 cut(s) 940
BspACI CCGC 7 cut(s) 323, 550, 601, 753, 778, 839, 1064
BspANI GGCC 1 cut(s) 375
BspCNI CTCAG 2 cut(s) 334, 451
BspLI GGNNCC 6 cut(s) 291, 374, 627, 744, 879, 1052
BspPI GGATC 3 cut(s) 666, 830, 1175
BspQI GCTCTTC 1 cut(s) 1069
BspT107I GGYRCC 2 cut(s) 625, 877
BsrDI GCAATG 2 cut(s) 333, 970
BsrI ACTGG 1 cut(s) 381
BssECI CCNNGG 4 cut(s) 270, 940, 1054, 1082
BssMI GATC 4 cut(s) 163, 658, 835, 1180
BssSI CACGAG 1 cut(s) 891
BssT1I CCWWGG 2 cut(s) 940, 1054
Bst2BI CACGAG 1 cut(s) 891
Bst2UI CCWGG 6 cut(s) 223, 272, 327, 735, 822, 935
Bst4CI ACNGT 2 cut(s) 213, 427
Bst6I CTCTTC 2 cut(s) 1069, 1105
BstC8I GCNNGC 5 cut(s) 377, 552, 755, 984, 1144
BstDEI CTNAG 4 cut(s) 126, 342, 438, 965
BstDSI CCRYGG 2 cut(s) 940, 1082
BstF5I GGATG 5 cut(s) 535, 610, 658, 1015, 1075
BstH2I RGCGCY 2 cut(s) 1082, 1149
BstHHI GCGC 4 cut(s) 252, 1015, 1081, 1148
BstKTI GATC 4 cut(s) 166, 661, 838, 1183
BstMAI GTCTC 3 cut(s) 12, 35, 269
BstMBI GATC 4 cut(s) 163, 658, 835, 1180
BstMWI GCNNNNNNNGC 4 cut(s) 607, 763, 1139, 1154
BstNI CCWGG 6 cut(s) 223, 272, 327, 735, 822, 935
BstNSI RCATGY 1 cut(s) 805
BstSCI CCNGG 6 cut(s) 221, 270, 325, 733, 820, 933
BstV1I GCAGC 2 cut(s) 470, 869
BstV2I GAAGAC 1 cut(s) 219
BstX2I RGATCY 1 cut(s) 658
BstYI RGATCY 1 cut(s) 658
BsuI GTATCC 1 cut(s) 277
BsuRI GGCC 1 cut(s) 375
BtgI CCRYGG 2 cut(s) 940, 1082
BtsCI GGATG 5 cut(s) 535, 610, 658, 1015, 1075
BtsI GCAGTG 1 cut(s) 1022
BtsIMutI CAGTG 4 cut(s) 209, 252, 388, 1022
Cac8I GCNNGC 5 cut(s) 377, 552, 755, 984, 1144
CfoI GCGC 4 cut(s) 252, 1015, 1081, 1148
Cfr13I GGNCC 2 cut(s) 373, 937
CseI GACGC 1 cut(s) 905
CsiI ACCWGGT 2 cut(s) 820, 933
Csp6I GTAC 3 cut(s) 172, 187, 637
CviAII CATG 7 cut(s) 560, 713, 762, 802, 852, 900, 941
CviQI GTAC 3 cut(s) 172, 187, 637
DdeI CTNAG 4 cut(s) 126, 342, 438, 965
DpnI GATC 4 cut(s) 165, 660, 837, 1182
DpnII GATC 4 cut(s) 163, 658, 835, 1180
DraIII CACNNNGTG 1 cut(s) 854
DrdI GACNNNNNNGTC 1 cut(s) 395
DseDI GACNNNNNNGTC 1 cut(s) 395
Eam1104I CTCTTC 2 cut(s) 1069, 1105
EarI CTCTTC 2 cut(s) 1069, 1105
Eco130I CCWWGG 2 cut(s) 940, 1054
Eco47I GGWCC 1 cut(s) 937
Eco88I CYCGRG 2 cut(s) 303, 1046
EcoO109I RGGNCCY 1 cut(s) 373
EcoRII CCWGG 6 cut(s) 221, 270, 325, 733, 820, 933
EcoT14I CCWWGG 2 cut(s) 940, 1054
ErhI CCWWGG 2 cut(s) 940, 1054
FaeI CATG 7 cut(s) 563, 716, 765, 805, 855, 903, 944
FatI CATG 7 cut(s) 559, 712, 761, 801, 851, 899, 940
FauI CCCGC 2 cut(s) 543, 746
FauNDI CATATG 1 cut(s) 918
Fnu4HI GCNGC 2 cut(s) 459, 858
FokI GGATG 5 cut(s) 542, 597, 665, 1022, 1082
Fsp4HI GCNGC 2 cut(s) 459, 858
FspAI RTGCGCAY 1 cut(s) 251
FspI TGCGCA 2 cut(s) 251, 1014
GlaI GCGC 4 cut(s) 251, 1014, 1080, 1147
GluI GCNGC 2 cut(s) 459, 858
GsaI CCCAGC 1 cut(s) 949
HaeII RGCGCY 2 cut(s) 1082, 1149
HaeIII GGCC 1 cut(s) 375
HgaI GACGC 1 cut(s) 905
HhaI GCGC 4 cut(s) 252, 1015, 1081, 1148
Hin1II CATG 7 cut(s) 563, 716, 765, 805, 855, 903, 944
Hin6I GCGC 4 cut(s) 250, 1013, 1079, 1146
HinP1I GCGC 4 cut(s) 250, 1013, 1079, 1146
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HinfI GANTC 5 cut(s) 87, 133, 344, 922, 1002
HphI GGTGA 3 cut(s) 70, 478, 797
Hpy166II GTNNAC 2 cut(s) 123, 799
Hpy188I TCNGA 7 cut(s) 86, 343, 349, 441, 478, 573, 927
Hpy188III TCNNGA 5 cut(s) 614, 706, 893, 953, 1048
Hpy8I GTNNAC 2 cut(s) 123, 799
HpyAV CCTTC 5 cut(s) 150, 165, 229, 1050, 1082
HpyCH4III ACNGT 2 cut(s) 213, 427
HpyCH4V TGCA 9 cut(s) 338, 458, 610, 683, 805, 831, 857, 986, 1107
HpyF10VI GCNNNNNNNGC 4 cut(s) 607, 763, 1139, 1154
HpyF3I CTNAG 4 cut(s) 126, 342, 438, 965
Hsp92II CATG 7 cut(s) 563, 716, 765, 805, 855, 903, 944
HspAI GCGC 4 cut(s) 250, 1013, 1079, 1146
Kzo9I GATC 4 cut(s) 163, 658, 835, 1180
LguI GCTCTTC 1 cut(s) 1069
LmnI GCTCC 1 cut(s) 670
Lsp1109I GCAGC 2 cut(s) 470, 869
LweI GCATC 4 cut(s) 347, 445, 619, 1000
MabI ACCWGGT 2 cut(s) 820, 933
MaeIII GTNAC 3 cut(s) 58, 415, 893
MalI GATC 4 cut(s) 165, 660, 837, 1182
MboI GATC 4 cut(s) 163, 658, 835, 1180
MboII GAAGA 5 cut(s) 128, 219, 350, 1086, 1122
MflI RGATCY 1 cut(s) 658
MhlI GDGCHC 2 cut(s) 675, 1135
MluCI AATT 5 cut(s) 22, 481, 533, 870, 1176
MlyI GAGTC 2 cut(s) 353, 1011
MmeI TCCRAC 4 cut(s) 52, 134, 317, 327
MseI TTAA 2 cut(s) 465, 678
MslI CAYNNNNRTG 2 cut(s) 507, 678
MspA1I CMGCKG 1 cut(s) 461
MspR9I CCNGG 6 cut(s) 223, 272, 327, 735, 822, 935
Mva1269I GAATGC 2 cut(s) 223, 567
MvaI CCWGG 6 cut(s) 223, 272, 327, 735, 822, 935
MwoI GCNNNNNNNGC 4 cut(s) 607, 763, 1139, 1154
NcoI CCATGG 1 cut(s) 940
NdeI CATATG 1 cut(s) 918
NdeII GATC 4 cut(s) 163, 658, 835, 1180
NlaIII CATG 7 cut(s) 563, 716, 765, 805, 855, 903, 944
NlaIV GGNNCC 6 cut(s) 291, 374, 627, 744, 879, 1052
NmeAIII GCCGAG 1 cut(s) 1174
NmuCI GTSAC 2 cut(s) 58, 893
NsbI TGCGCA 2 cut(s) 251, 1014
NspI RCATGY 1 cut(s) 805
PaeR7I CTCGAG 1 cut(s) 303
PciSI GCTCTTC 1 cut(s) 1069
PctI GAATGC 2 cut(s) 223, 567
PfeI GAWTC 3 cut(s) 87, 133, 922
PflFI GACNNNGTC 1 cut(s) 935
PkrI GCNGC 2 cut(s) 460, 859
PleI GAGTC 2 cut(s) 352, 1010
PpsI GAGTC 2 cut(s) 352, 1010
Psp6I CCWGG 6 cut(s) 221, 270, 325, 733, 820, 933
PspFI CCCAGC 1 cut(s) 945
PspGI CCWGG 6 cut(s) 221, 270, 325, 733, 820, 933
PspN4I GGNNCC 6 cut(s) 291, 374, 627, 744, 879, 1052
PspPI GGNCC 2 cut(s) 373, 937
PspXI VCTCGAGB 1 cut(s) 303
PsuI RGATCY 1 cut(s) 658
PsyI GACNNNGTC 1 cut(s) 935
PvuII CAGCTG 1 cut(s) 461
RsaI GTAC 3 cut(s) 173, 188, 638
RsaNI GTAC 3 cut(s) 172, 187, 637
RseI CAYNNNNRTG 2 cut(s) 507, 678
SapI GCTCTTC 1 cut(s) 1069
SaqAI TTAA 2 cut(s) 465, 678
SatI GCNGC 2 cut(s) 459, 858
Sau3AI GATC 4 cut(s) 163, 658, 835, 1180
Sau96I GGNCC 2 cut(s) 373, 937
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 2 cut(s) 353, 1011
ScrFI CCNGG 6 cut(s) 223, 272, 327, 735, 822, 935
SduI GDGCHC 2 cut(s) 675, 1135
SetI ASST 9 cut(s) 422, 433, 463, 787, 823, 883, 936, 1106, 1201
SexAI ACCWGGT 2 cut(s) 820, 933
SfaNI GCATC 4 cut(s) 347, 445, 619, 1000
Sfr274I CTCGAG 1 cut(s) 303
SinI GGWCC 1 cut(s) 937
SlaI CTCGAG 1 cut(s) 303
SmiMI CAYNNNNRTG 2 cut(s) 507, 678
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 5 cut(s) 22, 481, 533, 870, 1176
SsiI CCGC 7 cut(s) 323, 550, 601, 753, 778, 839, 1064
StyD4I CCNGG 6 cut(s) 221, 270, 325, 733, 820, 933
StyI CCWWGG 2 cut(s) 940, 1054
TaaI ACNGT 2 cut(s) 213, 427
TaqI TCGA 4 cut(s) 158, 304, 545, 1129
TasI AATT 5 cut(s) 22, 481, 533, 870, 1176
TatI WGTACW 2 cut(s) 186, 636
TfiI GAWTC 3 cut(s) 87, 133, 922
Tru1I TTAA 2 cut(s) 465, 678
Tru9I TTAA 2 cut(s) 465, 678
TscAI CASTG 4 cut(s) 216, 259, 388, 1022
TseFI GTSAC 2 cut(s) 58, 893
TseI GCWGC 2 cut(s) 458, 857
Tsp45I GTSAC 2 cut(s) 58, 893
TspDTI ATGAA 2 cut(s) 146, 546
TspRI CASTG 4 cut(s) 216, 259, 388, 1022
Tth111I GACNNNGTC 1 cut(s) 935
VpaK11BI GGWCC 1 cut(s) 937
XapI RAATTY 3 cut(s) 22, 481, 533
XceI RCATGY 1 cut(s) 805
XhoI CTCGAG 1 cut(s) 303
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.