AT3G27470

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0001946
Physical Location & Seq
Forward (+)
10162960 .. 10167546
4587 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G27470.2

Sequence Viewer

Length: 1197 bp
ATGAGAAGACCTAGTCAAATGATGAGGCTTCTATTAACATCCTTTTTCGGTGTTATTGTTGGTTTCCTTATGGGTATTACTTTTCCAACCTTGACTTTAACTAAGATGAATCTTCCATCCACATTGTTTCCCTCGATTGATCTTGCATACATTGAGGATAAATACTCTGACATATCAAGACAAAGACTATTTGGTTCTTGGTCTTCGACAAAAGGCCTCAAACTCAAGAATGACATCCCTGACCCTCCATATAACTATAATGACACTAAGATATGGGTTTCGACTAACCCCCGTGGTGCTGAGAGGCTACCACCAGATATAGTCACGCCTGAATCAGATTTTTACCTCCGTCGACTGTGGGGCGACCCTAATGAGGATTTAACAGTCAAGCAGCGGTATCTAGTAACATTTACGGTTGGCTATGATCAGAGGAAAAATATAGACACTGTGTTGAAGAAGTTCTCAGATAACTTCTCTATAATGCTGTTTCACTACGATGGCCGGGCAAGCGAATGGGAAGAGTTTGAATGGTCCAAGCGAGCCATTCATGTGAGCATTCGGAAACAAACAAAATGGTGGTACGCTAAGCGATTTCTTCATCCTGACATAGTTGCCCCCTATGAATATATCTTCATATGGGATGAGGATCTTGGCGTGGAACACTTTGATTCGGAAAAATATCTGGCGGTGGTGAAGAAGCATGGTTTGGAAATCTCACAGCCTGGATTAGAGCCATATGAAGGGCTCACATGGGAGATGACCAAGAAAAGAGACGACACTGAAGTCCACAAGCATGCTGAGGAAAGGAATGGGTGGTGCACTGATCCCAATTTACCCCCTTGTGCAGCGTTTGTGGAGATTATGGCTCCTGTTTTCTCCCGCAAGGCATGGCGCTGTGTGTGGCATATGATTCAGAACGATTTGATTCATGGATGGGGTCTGGACTTTGCCGTTCGGAAATGTGTTCAGAACGCACACGAGAAAATTGGAGTTGTAGATGCTCAATGGATTATACATCAAGGTGTTCCATCATTAGGGAATCAAGGACAACCAGAGCAAGGGAAACAACCATGGGAAGGGGTGAGAGAACGATGCAGGAGAGAGTGGACAATGTTTCAAGACAGATTGGATGATGCTGAAAAAGCTTATTTTGAAGCATCTGCTCACAAGAATGCTTCTTCACGGCCTCACGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

398

Amino Acids

46.6

Weight (kDa)

6.68

Isoelectric Point (pI)

39.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 95 - 381 7e-140 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 782
AccI GTMKAC 1 cut(s) 352
AciI CCGC 3 cut(s) 394, 686, 880
AclWI GGATC 2 cut(s) 654, 818
AcoI YGGCCR 1 cut(s) 499
AcuI CTGAAG 1 cut(s) 801
AfaI GTAC 1 cut(s) 581
AfiI CCNNNNNNNGG 5 cut(s) 373, 740, 1034, 1058, 1076
AgsI TTSAA 4 cut(s) 454, 527, 1118, 1154
AjnI CCWGG 1 cut(s) 721
AjuI GAANNNNNNNTTGG 2 cut(s) 689, 721
AluBI AGCT 1 cut(s) 1145
AluI AGCT 1 cut(s) 1145
Alw21I GWGCWC 1 cut(s) 821
Alw26I GTCTC 1 cut(s) 765
Alw44I GTGCAC 1 cut(s) 817
AlwI GGATC 2 cut(s) 654, 818
AoxI GGCC 3 cut(s) 214, 499, 1184
ApaLI GTGCAC 1 cut(s) 817
ApeKI GCWGC 2 cut(s) 391, 845
Asp700I GAANNNNTTC 1 cut(s) 458
AspLEI GCGC 1 cut(s) 894
AspS9I GGNCC 1 cut(s) 531
AsuC2I CCSGG 1 cut(s) 503
AsuHPI GGTGA 2 cut(s) 703, 1093
AvaII GGWCC 1 cut(s) 531
BaeGI GKGCMC 1 cut(s) 821
BanII GRGCYC 1 cut(s) 747
BauI CACGAG 1 cut(s) 977
BbsI GAAGAC 2 cut(s) 13, 195
Bbv12I GWGCWC 1 cut(s) 821
BbvCI CCTCAGC 1 cut(s) 798
BbvI GCAGC 2 cut(s) 403, 857
BccI CCATC 4 cut(s) 124, 491, 927, 1036
BceAI ACGGC 1 cut(s) 935
BciT130I CCWGG 1 cut(s) 723
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 1 cut(s) 503
BcoDI GTCTC 1 cut(s) 765
BfaI CTAG 2 cut(s) 12, 401
BfoI RGCGCY 1 cut(s) 895
BisI GCNGC 2 cut(s) 392, 846
BlpI GCTNAGC 1 cut(s) 585
BlsI GCNGC 2 cut(s) 393, 847
Bme1390I CCNGG 2 cut(s) 503, 723
Bme18I GGWCC 1 cut(s) 531
BmgT120I GGNCC 1 cut(s) 531
BmiI GGNNCC 1 cut(s) 867
BmrFI CCNGG 2 cut(s) 503, 723
BmsI GCATC 4 cut(s) 988, 1082, 1123, 1166
BpiI GAAGAC 2 cut(s) 13, 195
Bpu10I CCTNAGC 1 cut(s) 798
Bpu1102I GCTNAGC 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 209
BpuMI CCSGG 1 cut(s) 503
BsaBI GATNNNNATC 1 cut(s) 645
BsaJI CCNNGG 2 cut(s) 292, 1070
Bsc4I CCNNNNNNNGG 5 cut(s) 373, 740, 1034, 1058, 1076
Bse8I GATNNNNATC 1 cut(s) 645
BseBI CCWGG 1 cut(s) 723
BseDI CCNNGG 2 cut(s) 292, 1070
BseGI GGATG 7 cut(s) 38, 116, 234, 598, 646, 938, 1135
BseJI GATNNNNATC 1 cut(s) 645
BseLI CCNNNNNNNGG 5 cut(s) 373, 740, 1034, 1058, 1076
BseMII CTCAG 3 cut(s) 291, 477, 789
BseSI GKGCMC 1 cut(s) 821
BseXI GCAGC 2 cut(s) 403, 857
BsgI GTGCAG 1 cut(s) 864
BshFI GGCC 3 cut(s) 216, 501, 1186
BsiHKAI GWGCWC 1 cut(s) 821
BsiSI CCGG 1 cut(s) 502
BslI CCNNNNNNNGG 5 cut(s) 373, 740, 1034, 1058, 1076
BsmAI GTCTC 1 cut(s) 765
BsmBI CGTCTC 1 cut(s) 765
BsmI GAATGC 2 cut(s) 555, 1177
BsnI GGCC 3 cut(s) 216, 501, 1186
Bsp1286I GDGCHC 2 cut(s) 747, 821
Bsp143I GATC 4 cut(s) 139, 424, 646, 823
Bsp1720I GCTNAGC 1 cut(s) 585
Bsp19I CCATGG 1 cut(s) 1070
BspACI CCGC 3 cut(s) 394, 686, 880
BspANI GGCC 3 cut(s) 216, 501, 1186
BspCNI CTCAG 3 cut(s) 292, 476, 790
BspLI GGNNCC 1 cut(s) 867
BspPI GGATC 2 cut(s) 654, 818
BssECI CCNNGG 2 cut(s) 292, 1070
BssMI GATC 4 cut(s) 139, 424, 646, 823
BssSI CACGAG 1 cut(s) 977
BssT1I CCWWGG 1 cut(s) 1070
Bst2BI CACGAG 1 cut(s) 977
Bst2UI CCWGG 1 cut(s) 723
Bst4CI ACNGT 4 cut(s) 357, 385, 415, 448
Bst6I CTCTTC 1 cut(s) 513
BstC8I GCNNGC 3 cut(s) 508, 540, 795
BstDEI CTNAG 6 cut(s) 102, 267, 300, 463, 585, 798
BstDSI CCRYGG 2 cut(s) 292, 1070
BstF5I GGATG 7 cut(s) 38, 116, 234, 598, 646, 938, 1135
BstH2I RGCGCY 1 cut(s) 895
BstHHI GCGC 1 cut(s) 894
BstKTI GATC 4 cut(s) 142, 427, 649, 826
BstMAI GTCTC 1 cut(s) 765
BstMBI GATC 4 cut(s) 139, 424, 646, 823
BstMWI GCNNNNNNNGC 2 cut(s) 507, 1142
BstNI CCWGG 1 cut(s) 723
BstNSI RCATGY 1 cut(s) 797
BstSCI CCNGG 2 cut(s) 501, 721
BstSLI GKGCMC 1 cut(s) 821
BstV1I GCAGC 2 cut(s) 403, 857
BstV2I GAAGAC 2 cut(s) 13, 195
BstX2I RGATCY 1 cut(s) 646
BstYI RGATCY 1 cut(s) 646
BsuRI GGCC 3 cut(s) 216, 501, 1186
BtgI CCRYGG 2 cut(s) 292, 1070
BtsCI GGATG 7 cut(s) 38, 116, 234, 598, 646, 938, 1135
BtsIMutI CAGTG 3 cut(s) 444, 777, 819
Cac8I GCNNGC 3 cut(s) 508, 540, 795
CfoI GCGC 1 cut(s) 894
Cfr13I GGNCC 1 cut(s) 531
Csp6I GTAC 1 cut(s) 580
CviAII CATG 7 cut(s) 548, 701, 750, 794, 888, 929, 1071
CviQI GTAC 1 cut(s) 580
DdeI CTNAG 6 cut(s) 102, 267, 300, 463, 585, 798
DpnI GATC 4 cut(s) 141, 426, 648, 825
DpnII GATC 4 cut(s) 139, 424, 646, 823
DrdI GACNNNNNNGTC 1 cut(s) 782
DseDI GACNNNNNNGTC 1 cut(s) 782
EaeI YGGCCR 1 cut(s) 499
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
Eco130I CCWWGG 1 cut(s) 1070
Eco147I AGGCCT 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 747
Eco47I GGWCC 1 cut(s) 531
Eco57I CTGAAG 1 cut(s) 801
EcoRII CCWGG 1 cut(s) 721
EcoT14I CCWWGG 1 cut(s) 1070
EcoT38I GRGCYC 1 cut(s) 747
ErhI CCWWGG 1 cut(s) 1070
Esp3I CGTCTC 1 cut(s) 765
FaeI CATG 7 cut(s) 551, 704, 753, 797, 891, 932, 1074
FatI CATG 7 cut(s) 547, 700, 749, 793, 887, 928, 1070
FauI CCCGC 1 cut(s) 887
FauNDI CATATG 3 cut(s) 635, 736, 906
FbaI TGATCA 1 cut(s) 424
FblI GTMKAC 1 cut(s) 352
Fnu4HI GCNGC 2 cut(s) 392, 846
FokI GGATG 7 cut(s) 25, 103, 221, 585, 653, 945, 1142
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 2 cut(s) 392, 846
FspBI CTAG 2 cut(s) 12, 401
GlaI GCGC 1 cut(s) 893
GluI GCNGC 2 cut(s) 392, 846
HaeII RGCGCY 1 cut(s) 895
HaeIII GGCC 3 cut(s) 216, 501, 1186
HapII CCGG 1 cut(s) 502
HhaI GCGC 1 cut(s) 894
Hin1II CATG 7 cut(s) 551, 704, 753, 797, 891, 932, 1074
Hin6I GCGC 1 cut(s) 892
HinP1I GCGC 1 cut(s) 892
HincII GTYRAC 1 cut(s) 353
HindII GTYRAC 1 cut(s) 353
HindIII AAGCTT 1 cut(s) 1143
HinfI GANTC 6 cut(s) 109, 332, 668, 910, 925, 1039
HpaII CCGG 1 cut(s) 502
HphI GGTGA 2 cut(s) 703, 1093
Hpy166II GTNNAC 4 cut(s) 353, 787, 819, 1107
Hpy188I TCNGA 9 cut(s) 169, 337, 429, 466, 561, 673, 915, 957, 969
Hpy188III TCNNGA 5 cut(s) 177, 226, 602, 941, 1118
Hpy8I GTNNAC 4 cut(s) 353, 787, 819, 1107
Hpy99I CGWCG 1 cut(s) 354
HpyAV CCTTC 2 cut(s) 734, 1070
HpyCH4III ACNGT 4 cut(s) 357, 385, 415, 448
HpyCH4V TGCA 4 cut(s) 146, 819, 845, 1095
HpyF10VI GCNNNNNNNGC 2 cut(s) 507, 1142
HpyF3I CTNAG 6 cut(s) 102, 267, 300, 463, 585, 798
Hsp92II CATG 7 cut(s) 551, 704, 753, 797, 891, 932, 1074
HspAI GCGC 1 cut(s) 892
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 4 cut(s) 139, 424, 646, 823
LmnI GCTCC 1 cut(s) 871
Lsp1109I GCAGC 2 cut(s) 403, 857
LweI GCATC 4 cut(s) 988, 1082, 1123, 1166
MaeI CTAG 2 cut(s) 12, 401
MaeIII GTNAC 2 cut(s) 322, 403
MalI GATC 4 cut(s) 141, 426, 648, 825
MboI GATC 4 cut(s) 139, 424, 646, 823
MboII GAAGA 9 cut(s) 18, 104, 195, 466, 530, 587, 622, 706, 1170
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 2 cut(s) 747, 821
MluCI AATT 2 cut(s) 829, 984
MmeI TCCRAC 1 cut(s) 110
MroXI GAANNNNTTC 1 cut(s) 458
MseI TTAA 3 cut(s) 35, 98, 380
MslI CAYNNNNRTG 5 cut(s) 495, 548, 792, 1020, 1170
MspA1I CMGCKG 1 cut(s) 394
MspI CCGG 1 cut(s) 502
MspR9I CCNGG 2 cut(s) 503, 723
Mva1269I GAATGC 2 cut(s) 555, 1177
MvaI CCWGG 1 cut(s) 723
MwoI GCNNNNNNNGC 2 cut(s) 507, 1142
NciI CCSGG 1 cut(s) 503
NcoI CCATGG 1 cut(s) 1070
NdeI CATATG 3 cut(s) 635, 736, 906
NdeII GATC 4 cut(s) 139, 424, 646, 823
NlaIII CATG 7 cut(s) 551, 704, 753, 797, 891, 932, 1074
NlaIV GGNNCC 1 cut(s) 867
NmuCI GTSAC 1 cut(s) 322
NspI RCATGY 1 cut(s) 797
PaeI GCATGC 1 cut(s) 797
PceI AGGCCT 1 cut(s) 216
PctI GAATGC 2 cut(s) 555, 1177
PdmI GAANNNNTTC 1 cut(s) 458
PfeI GAWTC 6 cut(s) 109, 332, 668, 910, 925, 1039
PflFI GACNNNGTC 1 cut(s) 12
PkrI GCNGC 2 cut(s) 393, 847
Psp6I CCWGG 1 cut(s) 721
PspGI CCWGG 1 cut(s) 721
PspN4I GGNNCC 1 cut(s) 867
PspPI GGNCC 1 cut(s) 531
PsuI RGATCY 1 cut(s) 646
PsyI GACNNNGTC 1 cut(s) 12
RsaI GTAC 1 cut(s) 581
RsaNI GTAC 1 cut(s) 580
RseI CAYNNNNRTG 5 cut(s) 495, 548, 792, 1020, 1170
SalI GTCGAC 1 cut(s) 351
SaqAI TTAA 3 cut(s) 35, 98, 380
SatI GCNGC 2 cut(s) 392, 846
Sau3AI GATC 4 cut(s) 139, 424, 646, 823
Sau96I GGNCC 1 cut(s) 531
ScrFI CCNGG 2 cut(s) 503, 723
SduI GDGCHC 2 cut(s) 747, 821
SetI ASST 5 cut(s) 13, 92, 348, 1024, 1147
SfaNI GCATC 4 cut(s) 988, 1082, 1123, 1166
SinI GGWCC 1 cut(s) 531
SmiMI CAYNNNNRTG 5 cut(s) 495, 548, 792, 1020, 1170
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
SphI GCATGC 1 cut(s) 797
Sse9I AATT 2 cut(s) 829, 984
SseBI AGGCCT 1 cut(s) 216
SsiI CCGC 3 cut(s) 394, 686, 880
SspMI CTAG 2 cut(s) 12, 401
StuI AGGCCT 1 cut(s) 216
StyD4I CCNGG 2 cut(s) 501, 721
StyI CCWWGG 1 cut(s) 1070
TaaI ACNGT 4 cut(s) 357, 385, 415, 448
TaqI TCGA 4 cut(s) 134, 206, 281, 352
TasI AATT 2 cut(s) 829, 984
TfiI GAWTC 6 cut(s) 109, 332, 668, 910, 925, 1039
Tru1I TTAA 3 cut(s) 35, 98, 380
Tru9I TTAA 3 cut(s) 35, 98, 380
TscAI CASTG 3 cut(s) 451, 784, 826
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 2 cut(s) 391, 845
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 7 cut(s) 122, 536, 587, 622, 636, 753, 917
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 3 cut(s) 451, 784, 826
Tth111I GACNNNGTC 1 cut(s) 12
VneI GTGCAC 1 cut(s) 817
VpaK11BI GGWCC 1 cut(s) 531
XceI RCATGY 1 cut(s) 797
XmiI GTMKAC 1 cut(s) 352
XmnI GAANNNNTTC 1 cut(s) 458
XspI CTAG 2 cut(s) 12, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.