Rh2AG647700

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001946
Physical Location & Seq
Reverse (-)
86753938 .. 86759165
5228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG647700.1

Sequence Viewer

Length: 909 bp
ATGGACCCTGTTTTGAGCCTTTGCAGTGGGAATATAAGAAAACCCAAAGAGAAAATGAGGTTTGTTGCGACAGCTTTTGTGGCGATTCTGTTTGGCTTCTTTCTAGGAGTGTCATTTCCAACGGTTTCATTAACTAAGATGAATCTCCCATCCAGCCTTTTACCTTCCATTGATCTTTCATACATAGAGGACAAGTACTCGGGGTTCTCAACCCAAGCACTGGTGAATGCCTGGTCTTCTTTGAAGAGCAACAGAGATATCTCTGTAAAATACATCCCTAATGATGCAAAGATTTGGGTTCCAACAAATCCTCCAGGGGCTGAAAGACTACCCCCTGGCATCGTAGAATCTGAGTCAGATCTATATCTTCGTCGATTATGGGGTCTGCCCAGTGAGGACTTAACCATCAAGCCAAAGTATCTTGTAACCTTTACTGTAGGCCTTGCTCAGAAACAAAATATAAATGCAGCAGTTAAAAAGTTCTCAGAGAATTTCACAATTGTTTTATTTCACTATGATGGTCGGACAAGTGAATGGGATGAGTTTGAGTGGTCAAAGCGGGCCATCCATGTGAGCATTCGGAAGCAAACTAAATGGTGGTATGCCAAGCGTTTTTTGCATCCTGACATTGTGGCATCCTATGAATACATATTTATTTGGGATGAGGATCTCGGTGTGGAGCACTTTAACGCAGAGGAATACATAAAACTAGTAAGGAAACATGGGTTGGAAATATCACAGCCTGGTTTAGAACCAAATAATGGGCTAACATGGCAGATGACAAAGCGGAGAGGTCATAGTGAAGTTCACATGCAGACAGAGGAGAAACCTGGTTGGTGTAATGATCCGCATTTACCGCCCTGTGCAGCGTATGTAACTATATCTTATCCTTCACCCTCTGGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

302

Amino Acids

34.56

Weight (kDa)

8.27

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 102 - 297 1.8e-92 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 220, 761
AciI CCGC 4 cut(s) 559, 787, 848, 857
AclWI GGATC 2 cut(s) 675, 839
AcsI RAATTY 1 cut(s) 490
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 220, 761
AgsI TTSAA 1 cut(s) 244
AhlI ACTAGT 1 cut(s) 709
AjnI CCWGG 5 cut(s) 230, 313, 334, 742, 829
AjuI GAANNNNNNNTTGG 2 cut(s) 710, 742
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw21I GWGCWC 1 cut(s) 684
AlwI GGATC 2 cut(s) 675, 839
AlwNI CAGNNNCTG 1 cut(s) 320
Ama87I CYCGRG 1 cut(s) 199
AoxI GGCC 2 cut(s) 439, 561
ApeKI GCWGC 2 cut(s) 467, 866
ApoI RAATTY 1 cut(s) 490
AspS9I GGNCC 2 cut(s) 4, 561
AsuHPI GGTGA 2 cut(s) 235, 885
AvaI CYCGRG 1 cut(s) 199
AvaII GGWCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 2 cut(s) 479, 878
BccI CCATC 4 cut(s) 157, 413, 512, 572
BciT130I CCWGG 5 cut(s) 232, 315, 336, 744, 831
BcuI ACTAGT 1 cut(s) 709
BfaI CTAG 2 cut(s) 104, 710
BfmI CTRYAG 1 cut(s) 435
BglII AGATCT 1 cut(s) 358
BisI GCNGC 2 cut(s) 468, 867
BlsI GCNGC 2 cut(s) 469, 868
BmcAI AGTACT 1 cut(s) 197
Bme1390I CCNGG 5 cut(s) 232, 315, 336, 744, 831
Bme18I GGWCC 1 cut(s) 4
BmeT110I CYCGRG 1 cut(s) 199
BmgT120I GGNCC 2 cut(s) 4, 561
BmiI GGNNCC 2 cut(s) 6, 300
BmrFI CCNGG 5 cut(s) 232, 315, 336, 744, 831
BmrI ACTGGG 1 cut(s) 384
BmsI GCATC 4 cut(s) 274, 348, 628, 644
BmuI ACTGGG 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 228
BpmI CTGGAG 1 cut(s) 297
BsaBI GATNNNNATC 2 cut(s) 363, 666
BsaJI CCNNGG 2 cut(s) 314, 334
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bsc4I CCNNNNNNNGG 2 cut(s) 220, 761
Bse1I ACTGG 2 cut(s) 225, 390
Bse8I GATNNNNATC 2 cut(s) 363, 666
BseBI CCWGG 5 cut(s) 232, 315, 336, 744, 831
BseDI CCNNGG 2 cut(s) 314, 334
BseGI GGATG 7 cut(s) 149, 273, 544, 564, 619, 635, 667
BseJI GATNNNNATC 2 cut(s) 363, 666
BseLI CCNNNNNNNGG 2 cut(s) 220, 761
BseMII CTCAG 3 cut(s) 342, 461, 498
BseNI ACTGG 2 cut(s) 225, 390
BseRI GAGGAG 1 cut(s) 836
BseXI GCAGC 2 cut(s) 479, 878
BsgI GTGCAG 1 cut(s) 885
BshFI GGCC 2 cut(s) 441, 563
BsiHKAI GWGCWC 1 cut(s) 684
BsiHKCI CYCGRG 1 cut(s) 199
BslI CCNNNNNNNGG 2 cut(s) 220, 761
BsmI GAATGC 2 cut(s) 232, 576
BsnI GGCC 2 cut(s) 441, 563
BsoBI CYCGRG 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 684
Bsp143I GATC 4 cut(s) 172, 358, 667, 844
BspACI CCGC 4 cut(s) 559, 787, 848, 857
BspANI GGCC 2 cut(s) 441, 563
BspCNI CTCAG 3 cut(s) 343, 460, 497
BspLI GGNNCC 2 cut(s) 6, 300
BspPI GGATC 2 cut(s) 675, 839
BspQI GCTCTTC 1 cut(s) 239
BsrI ACTGG 2 cut(s) 225, 390
BssECI CCNNGG 2 cut(s) 314, 334
BssMI GATC 4 cut(s) 172, 358, 667, 844
Bst2UI CCWGG 5 cut(s) 232, 315, 336, 744, 831
Bst4CI ACNGT 2 cut(s) 124, 436
Bst6I CTCTTC 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 561
BstDEI CTNAG 4 cut(s) 135, 351, 447, 484
BstF5I GGATG 7 cut(s) 149, 273, 544, 564, 619, 635, 667
BstKTI GATC 4 cut(s) 175, 361, 670, 847
BstMBI GATC 4 cut(s) 172, 358, 667, 844
BstMWI GCNNNNNNNGC 4 cut(s) 80, 616, 772, 856
BstNI CCWGG 5 cut(s) 232, 315, 336, 744, 831
BstNSI RCATGY 1 cut(s) 814
BstSCI CCNGG 5 cut(s) 230, 313, 334, 742, 829
BstSFI CTRYAG 1 cut(s) 435
BstV1I GCAGC 2 cut(s) 479, 878
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 2 cut(s) 358, 667
BstYI RGATCY 2 cut(s) 358, 667
BsuRI GGCC 2 cut(s) 441, 563
BtsCI GGATG 7 cut(s) 149, 273, 544, 564, 619, 635, 667
BtsI GCAGTG 1 cut(s) 31
BtsIMutI CAGTG 3 cut(s) 31, 218, 397
Cac8I GCNNGC 1 cut(s) 561
CaiI CAGNNNCTG 1 cut(s) 320
Cfr13I GGNCC 2 cut(s) 4, 561
CsiI ACCWGGT 1 cut(s) 829
Csp6I GTAC 1 cut(s) 196
CviAII CATG 4 cut(s) 569, 722, 771, 811
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 4 cut(s) 135, 351, 447, 484
DpnI GATC 4 cut(s) 174, 360, 669, 846
DpnII GATC 4 cut(s) 172, 358, 667, 844
Eam1104I CTCTTC 1 cut(s) 239
EarI CTCTTC 1 cut(s) 239
Eco147I AGGCCT 1 cut(s) 441
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 4
Eco88I CYCGRG 1 cut(s) 199
EcoRII CCWGG 5 cut(s) 230, 313, 334, 742, 829
EcoRV GATATC 1 cut(s) 259
FaeI CATG 4 cut(s) 572, 725, 774, 814
FatI CATG 4 cut(s) 568, 721, 770, 810
FauI CCCGC 1 cut(s) 552
Fnu4HI GCNGC 2 cut(s) 468, 867
FokI GGATG 7 cut(s) 136, 260, 551, 551, 606, 622, 674
Fsp4HI GCNGC 2 cut(s) 468, 867
FspBI CTAG 2 cut(s) 104, 710
GluI GCNGC 2 cut(s) 468, 867
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 2 cut(s) 441, 563
Hin1II CATG 4 cut(s) 572, 725, 774, 814
HinfI GANTC 4 cut(s) 85, 142, 347, 353
HphI GGTGA 2 cut(s) 235, 885
Hpy166II GTNNAC 1 cut(s) 808
Hpy188I TCNGA 6 cut(s) 352, 358, 450, 487, 525, 582
Hpy188III TCNNGA 1 cut(s) 623
Hpy8I GTNNAC 1 cut(s) 808
Hpy99I CGWCG 1 cut(s) 375
HpyAV CCTTC 2 cut(s) 174, 900
HpyCH4III ACNGT 2 cut(s) 124, 436
HpyCH4V TGCA 6 cut(s) 24, 287, 467, 619, 814, 866
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 616, 772, 856
HpyF3I CTNAG 4 cut(s) 135, 351, 447, 484
Hsp92II CATG 4 cut(s) 572, 725, 774, 814
Kzo9I GATC 4 cut(s) 172, 358, 667, 844
LguI GCTCTTC 1 cut(s) 239
LmnI GCTCC 1 cut(s) 679
Lsp1109I GCAGC 2 cut(s) 479, 878
LweI GCATC 4 cut(s) 274, 348, 628, 644
MabI ACCWGGT 1 cut(s) 829
MaeI CTAG 2 cut(s) 104, 710
MaeIII GTNAC 2 cut(s) 424, 874
MalI GATC 4 cut(s) 174, 360, 669, 846
MboI GATC 4 cut(s) 172, 358, 667, 844
MboII GAAGA 3 cut(s) 228, 256, 359
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 2 cut(s) 358, 667
MhlI GDGCHC 1 cut(s) 684
MluCI AATT 2 cut(s) 490, 498
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 4 cut(s) 143, 326, 503, 708
MnlI CCTC 9 cut(s) 51, 181, 321, 388, 658, 688, 785, 814, 907
MseI TTAA 4 cut(s) 131, 401, 474, 687
MslI CAYNNNNRTG 2 cut(s) 516, 569
MspR9I CCNGG 5 cut(s) 232, 315, 336, 744, 831
MunI CAATTG 1 cut(s) 498
Mva1269I GAATGC 2 cut(s) 232, 576
MvaI CCWGG 5 cut(s) 232, 315, 336, 744, 831
MwoI GCNNNNNNNGC 4 cut(s) 80, 616, 772, 856
NdeII GATC 4 cut(s) 172, 358, 667, 844
NlaIII CATG 4 cut(s) 572, 725, 774, 814
NlaIV GGNNCC 2 cut(s) 6, 300
NspI RCATGY 1 cut(s) 814
PceI AGGCCT 1 cut(s) 441
PciSI GCTCTTC 1 cut(s) 239
PctI GAATGC 2 cut(s) 232, 576
PfeI GAWTC 3 cut(s) 85, 142, 347
PflMI CCANNNNNTGG 2 cut(s) 220, 761
PkrI GCNGC 2 cut(s) 469, 868
PleI GAGTC 1 cut(s) 361
PpsI GAGTC 1 cut(s) 361
Psp6I CCWGG 5 cut(s) 230, 313, 334, 742, 829
PspGI CCWGG 5 cut(s) 230, 313, 334, 742, 829
PspN4I GGNNCC 2 cut(s) 6, 300
PspPI GGNCC 2 cut(s) 4, 561
PsrI GAACNNNNNNTAC 2 cut(s) 188, 220
PstNI CAGNNNCTG 1 cut(s) 320
PsuI RGATCY 2 cut(s) 358, 667
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 2 cut(s) 516, 569
SapI GCTCTTC 1 cut(s) 239
SaqAI TTAA 4 cut(s) 131, 401, 474, 687
SatI GCNGC 2 cut(s) 468, 867
Sau3AI GATC 4 cut(s) 172, 358, 667, 844
Sau96I GGNCC 2 cut(s) 4, 561
ScaI AGTACT 1 cut(s) 197
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 5 cut(s) 232, 315, 336, 744, 831
SduI GDGCHC 1 cut(s) 684
SetI ASST 6 cut(s) 62, 76, 166, 431, 796, 832
SexAI ACCWGGT 1 cut(s) 829
SfaNI GCATC 4 cut(s) 274, 348, 628, 644
SfcI CTRYAG 1 cut(s) 435
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 2 cut(s) 516, 569
SpeI ACTAGT 1 cut(s) 709
Sse9I AATT 2 cut(s) 490, 498
SseBI AGGCCT 1 cut(s) 441
SsiI CCGC 4 cut(s) 559, 787, 848, 857
SspMI CTAG 2 cut(s) 104, 710
StuI AGGCCT 1 cut(s) 441
StyD4I CCNGG 5 cut(s) 230, 313, 334, 742, 829
TaaI ACNGT 2 cut(s) 124, 436
TaqI TCGA 1 cut(s) 373
TasI AATT 2 cut(s) 490, 498
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 3 cut(s) 85, 142, 347
Tru1I TTAA 4 cut(s) 131, 401, 474, 687
Tru9I TTAA 4 cut(s) 131, 401, 474, 687
TscAI CASTG 3 cut(s) 31, 225, 397
TseI GCWGC 2 cut(s) 467, 866
TspDTI ATGAA 4 cut(s) 117, 155, 168, 657
TspRI CASTG 3 cut(s) 31, 225, 397
Van91I CCANNNNNTGG 2 cut(s) 220, 761
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 490
XceI RCATGY 1 cut(s) 814
XspI CTAG 2 cut(s) 104, 710
ZrmI AGTACT 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.