Rw2G026330

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0001946
Physical Location & Seq
Forward (+)
40562180 .. 40567064
4885 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G026330.1

Sequence Viewer

Length: 1110 bp
ATGGGATGCTCCAGAGTTGGGAATATAAGAAAACCCAAAGAGAAAATGAGGTTTGTTGCGACTGCTTTTGTGGCGATTCTGTTTGGCTTCTTTCTAGGAGTGTCATTCCCAACCATTTCGTTAACTAAGGTCCATTTTTCTTCCATTGATATTTCATACATAGAGGAGAAGTACTCGGGGTTCTCAACCCAAGCATGGTCTTCTTTGAAGAGCAACAGAGATATCTCTGTAAAATACATCCCTAATGATGCAAAGGCAGATTTGGGTTCCAAACAAATCCTCCTTGGCATCGTGGAATCTGAGTCAGATTTATATCTTCATCAATTATGGGGTCTGCCCAGTGAGGACTTAACCATCAAGCCAAAATATCTTGTAACCTTTACTGTAGGCCATGCTCAGAAAAAAAATATAGATGCCGCAGTTAAAAAGTTCTCAGAGAATTTCACAATTGTTTTATTTCACTGTGATGGTCAGACAAGTGAATGGGATCAGTTTGAGGGGTCAAAGCAGGCTATCCATGTGAGCATTCAGAAGCAAACTAAATGGTGGTGTGCCAAGCGTTTTTTGCATCCTGACATTGTGGCATCCTATGAATACATATTAATTTGGGATGGATACATAAAACTAGTAAGGAAATATGGGTTGGAAGTATCACAGTCTGGTTTAGAACCAAATAATGGGCTAACATGGCAGATGACAAAGGAGAGGCAGACAGAGGAGAAACCTGGTTGGTGTAATGATTTGCATTTGCCGCCCTGTGCAGCGTTTGTAGAAATTATGGCGCCTGTGTTTTCTCGGGATGCATGGTGTTGTGTTTGGCATATGATTCAGAATGACCTGGTCCATGTTAGGGGTCTGGATTTTGCTCTTAGACGCTGTGTAGAGCCTGCACATGAGAAAATAGGAGTCGTAGATGCACAGTGGATTGTCCATCAAGGTGTTCCTTCACTTCTAAACCAGGTAAACCCTAGCCCGAGCAGAGCACTTAGAGCTCCATGGGAAGGGAGCCTGAAAACTGCAAATTATTTTCGTGTCAGGTCGGAATGGTTGGTGCAGAAAGCATATTTTGAAGAAATGGGAATTGATCCCCCAAATTCAACAGCACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

369

Amino Acids

42.11

Weight (kDa)

8.31

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 88 - 324 6e-96 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 781
AccB7I CCANNNNNTGG 1 cut(s) 677
AciI CCGC 2 cut(s) 417, 752
AclWI GGATC 2 cut(s) 495, 1079
AcsI RAATTY 2 cut(s) 439, 1093
AcyI GRCGYC 1 cut(s) 782
AfaI GTAC 1 cut(s) 173
AfiI CCNNNNNNNGG 5 cut(s) 18, 195, 677, 850, 1001
AgsI TTSAA 3 cut(s) 208, 1070, 1098
AhlI ACTAGT 1 cut(s) 625
AjnI CCWGG 3 cut(s) 724, 837, 957
AjuI GAANNNNNNNTTGG 2 cut(s) 626, 658
AluBI AGCT 1 cut(s) 992
AluI AGCT 1 cut(s) 992
Alw21I GWGCWC 2 cut(s) 985, 994
AlwI GGATC 2 cut(s) 495, 1079
Ama87I CYCGRG 3 cut(s) 175, 795, 973
AoxI GGCC 1 cut(s) 388
ApeKI GCWGC 1 cut(s) 761
ApoI RAATTY 2 cut(s) 439, 1093
AseI ATTAAT 1 cut(s) 602
AspLEI GCGC 1 cut(s) 784
AspS9I GGNCC 2 cut(s) 130, 841
AvaI CYCGRG 3 cut(s) 175, 795, 973
AvaII GGWCC 2 cut(s) 130, 841
BanI GGYRCC 1 cut(s) 781
BanII GRGCYC 1 cut(s) 994
BbsI GAAGAC 1 cut(s) 192
Bbv12I GWGCWC 2 cut(s) 985, 994
BbvI GCAGC 1 cut(s) 773
BccI CCATC 4 cut(s) 362, 461, 605, 939
BciT130I CCWGG 3 cut(s) 726, 839, 959
BciVI GTATCC 1 cut(s) 608
BcuI ACTAGT 1 cut(s) 625
BfaI CTAG 3 cut(s) 95, 626, 969
BfmI CTRYAG 1 cut(s) 384
BfoI RGCGCY 1 cut(s) 785
BfuI GTATCC 1 cut(s) 608
BisI GCNGC 3 cut(s) 417, 752, 762
BlsI GCNGC 3 cut(s) 418, 753, 763
BmcAI AGTACT 1 cut(s) 173
Bme1390I CCNGG 3 cut(s) 726, 839, 959
Bme18I GGWCC 2 cut(s) 130, 841
BmeT110I CYCGRG 3 cut(s) 175, 795, 973
BmgT120I GGNCC 2 cut(s) 130, 841
BmiI GGNNCC 3 cut(s) 268, 783, 1007
BmrFI CCNGG 3 cut(s) 726, 839, 959
BmrI ACTGGG 1 cut(s) 333
BmsI GCATC 7 cut(s) 238, 297, 403, 577, 593, 790, 904
BmuI ACTGGG 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 192
BplI GAGNNNNNCTC 2 cut(s) 158, 190
BsaBI GATNNNNATC 1 cut(s) 312
BsaHI GRCGYC 1 cut(s) 782
BsaJI CCNNGG 2 cut(s) 283, 995
BsaXI ACNNNNNCTCC 2 cut(s) 264, 294
Bsc4I CCNNNNNNNGG 5 cut(s) 18, 195, 677, 850, 1001
Bse1I ACTGG 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 312
BseBI CCWGG 3 cut(s) 726, 839, 959
BseDI CCNNGG 2 cut(s) 283, 995
BseGI GGATG 6 cut(s) 11, 237, 568, 584, 616, 805
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 5 cut(s) 18, 195, 677, 850, 1001
BseMII CTCAG 3 cut(s) 291, 410, 447
BseNI ACTGG 1 cut(s) 339
BseRI GAGGAG 2 cut(s) 179, 731
BseXI GCAGC 1 cut(s) 773
BsgI GTGCAG 3 cut(s) 780, 873, 1073
BshFI GGCC 1 cut(s) 390
BshNI GGYRCC 1 cut(s) 781
BsiHKAI GWGCWC 2 cut(s) 985, 994
BsiHKCI CYCGRG 3 cut(s) 175, 795, 973
BslI CCNNNNNNNGG 5 cut(s) 18, 195, 677, 850, 1001
BsmI GAATGC 1 cut(s) 525
BsnI GGCC 1 cut(s) 390
BsoBI CYCGRG 3 cut(s) 175, 795, 973
Bsp1286I GDGCHC 2 cut(s) 985, 994
Bsp143I GATC 2 cut(s) 487, 1084
Bsp19I CCATGG 1 cut(s) 995
BspACI CCGC 2 cut(s) 417, 752
BspANI GGCC 1 cut(s) 390
BspCNI CTCAG 3 cut(s) 292, 409, 446
BspLI GGNNCC 3 cut(s) 268, 783, 1007
BspPI GGATC 2 cut(s) 495, 1079
BspQI GCTCTTC 1 cut(s) 203
BspT107I GGYRCC 1 cut(s) 781
BsrI ACTGG 1 cut(s) 339
BssECI CCNNGG 2 cut(s) 283, 995
BssMI GATC 2 cut(s) 487, 1084
BssNI GRCGYC 1 cut(s) 782
BssT1I CCWWGG 2 cut(s) 283, 995
Bst2UI CCWGG 3 cut(s) 726, 839, 959
Bst4CI ACNGT 4 cut(s) 385, 464, 657, 921
Bst6I CTCTTC 1 cut(s) 203
BstACI GRCGYC 1 cut(s) 782
BstC8I GCNNGC 2 cut(s) 510, 888
BstDEI CTNAG 6 cut(s) 126, 300, 396, 433, 869, 986
BstDSI CCRYGG 1 cut(s) 995
BstF5I GGATG 6 cut(s) 11, 237, 568, 584, 616, 805
BstH2I RGCGCY 1 cut(s) 785
BstHHI GCGC 1 cut(s) 784
BstKTI GATC 2 cut(s) 490, 1087
BstMBI GATC 2 cut(s) 487, 1084
BstMWI GCNNNNNNNGC 5 cut(s) 71, 565, 688, 751, 989
BstNI CCWGG 3 cut(s) 726, 839, 959
BstSCI CCNGG 3 cut(s) 724, 837, 957
BstSFI CTRYAG 1 cut(s) 384
BstV1I GCAGC 1 cut(s) 773
BstV2I GAAGAC 1 cut(s) 192
BsuI GTATCC 1 cut(s) 608
BsuRI GGCC 1 cut(s) 390
BtgI CCRYGG 1 cut(s) 995
BtsCI GGATG 6 cut(s) 11, 237, 568, 584, 616, 805
BtsIMutI CAGTG 3 cut(s) 346, 460, 926
Cac8I GCNNGC 2 cut(s) 510, 888
CfoI GCGC 1 cut(s) 784
Cfr13I GGNCC 2 cut(s) 130, 841
CseI GACGC 1 cut(s) 882
CsiI ACCWGGT 3 cut(s) 724, 837, 957
Csp6I GTAC 1 cut(s) 172
CviAII CATG 8 cut(s) 195, 392, 518, 687, 804, 845, 893, 996
CviJI RGCY 9 cut(s) 87, 361, 390, 512, 682, 886, 972, 992, 1008
CviKI_1 RGCY 9 cut(s) 87, 361, 390, 512, 682, 886, 972, 992, 1008
CviQI GTAC 1 cut(s) 172
DdeI CTNAG 6 cut(s) 126, 300, 396, 433, 869, 986
DinI GGCGCC 1 cut(s) 783
DpnI GATC 2 cut(s) 489, 1086
DpnII GATC 2 cut(s) 487, 1084
Eam1104I CTCTTC 1 cut(s) 203
EarI CTCTTC 1 cut(s) 203
Ecl136II GAGCTC 1 cut(s) 992
Eco130I CCWWGG 2 cut(s) 283, 995
Eco24I GRGCYC 1 cut(s) 994
Eco32I GATATC 1 cut(s) 223
Eco47I GGWCC 2 cut(s) 130, 841
Eco53kI GAGCTC 1 cut(s) 992
Eco88I CYCGRG 3 cut(s) 175, 795, 973
EcoICRI GAGCTC 1 cut(s) 992
EcoRII CCWGG 3 cut(s) 724, 837, 957
EcoRV GATATC 1 cut(s) 223
EcoT14I CCWWGG 2 cut(s) 283, 995
EcoT22I ATGCAT 1 cut(s) 805
EcoT38I GRGCYC 1 cut(s) 994
EgeI GGCGCC 1 cut(s) 783
EheI GGCGCC 1 cut(s) 783
ErhI CCWWGG 2 cut(s) 283, 995
FaeI CATG 8 cut(s) 198, 395, 521, 690, 807, 848, 896, 999
FatI CATG 8 cut(s) 194, 391, 517, 686, 803, 844, 892, 995
FauNDI CATATG 1 cut(s) 822
Fnu4HI GCNGC 3 cut(s) 417, 752, 762
FokI GGATG 6 cut(s) 18, 224, 555, 571, 623, 812
FriOI GRGCYC 1 cut(s) 994
Fsp4HI GCNGC 3 cut(s) 417, 752, 762
FspBI CTAG 3 cut(s) 95, 626, 969
GlaI GCGC 1 cut(s) 783
GluI GCNGC 3 cut(s) 417, 752, 762
HaeII RGCGCY 1 cut(s) 785
HaeIII GGCC 1 cut(s) 390
HgaI GACGC 1 cut(s) 882
HhaI GCGC 1 cut(s) 784
Hin1I GRCGYC 1 cut(s) 782
Hin1II CATG 8 cut(s) 198, 395, 521, 690, 807, 848, 896, 999
Hin6I GCGC 1 cut(s) 782
HinP1I GCGC 1 cut(s) 782
HincII GTYRAC 1 cut(s) 123
HindII GTYRAC 1 cut(s) 123
HinfI GANTC 5 cut(s) 76, 296, 302, 826, 906
HpaI GTTAAC 1 cut(s) 123
Hpy166II GTNNAC 2 cut(s) 123, 964
Hpy188I TCNGA 8 cut(s) 301, 307, 399, 436, 474, 531, 831, 1042
Hpy188III TCNNGA 4 cut(s) 12, 572, 797, 857
Hpy8I GTNNAC 2 cut(s) 123, 964
HpyAV CCTTC 2 cut(s) 954, 995
HpyCH4III ACNGT 4 cut(s) 385, 464, 657, 921
HpyCH4IV ACGT 1 cut(s) 1105
HpyCH4V TGCA 9 cut(s) 251, 568, 745, 761, 803, 890, 917, 1019, 1054
HpyF10VI GCNNNNNNNGC 5 cut(s) 71, 565, 688, 751, 989
HpyF3I CTNAG 6 cut(s) 126, 300, 396, 433, 869, 986
HpySE526I ACGT 1 cut(s) 1105
Hsp92I GRCGYC 1 cut(s) 782
Hsp92II CATG 8 cut(s) 198, 395, 521, 690, 807, 848, 896, 999
HspAI GCGC 1 cut(s) 782
KasI GGCGCC 1 cut(s) 781
KspAI GTTAAC 1 cut(s) 123
Kzo9I GATC 2 cut(s) 487, 1084
LguI GCTCTTC 1 cut(s) 203
LmnI GCTCC 3 cut(s) 14, 997, 1005
Lsp1109I GCAGC 1 cut(s) 773
LweI GCATC 7 cut(s) 238, 297, 403, 577, 593, 790, 904
MabI ACCWGGT 3 cut(s) 724, 837, 957
MaeI CTAG 3 cut(s) 95, 626, 969
MaeII ACGT 1 cut(s) 1105
MaeIII GTNAC 1 cut(s) 373
MalI GATC 2 cut(s) 489, 1086
MboI GATC 2 cut(s) 487, 1084
MboII GAAGA 5 cut(s) 132, 192, 220, 308, 1082
MfeI CAATTG 1 cut(s) 447
MhlI GDGCHC 2 cut(s) 985, 994
MluCI AATT 8 cut(s) 323, 439, 447, 603, 774, 1021, 1080, 1093
Mly113I GGCGCC 1 cut(s) 782
MlyI GAGTC 2 cut(s) 311, 915
MmeI TCCRAC 2 cut(s) 624, 1020
MnlI CCTC 7 cut(s) 42, 157, 290, 337, 490, 699, 709
Mph1103I ATGCAT 1 cut(s) 805
MseI TTAA 4 cut(s) 122, 350, 423, 602
MslI CAYNNNNRTG 2 cut(s) 465, 936
MspR9I CCNGG 3 cut(s) 726, 839, 959
MunI CAATTG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 525
MvaI CCWGG 3 cut(s) 726, 839, 959
MwoI GCNNNNNNNGC 5 cut(s) 71, 565, 688, 751, 989
NarI GGCGCC 1 cut(s) 782
NcoI CCATGG 1 cut(s) 995
NdeI CATATG 1 cut(s) 822
NdeII GATC 2 cut(s) 487, 1084
NlaIII CATG 8 cut(s) 198, 395, 521, 690, 807, 848, 896, 999
NlaIV GGNNCC 3 cut(s) 268, 783, 1007
NsiI ATGCAT 1 cut(s) 805
PciSI GCTCTTC 1 cut(s) 203
PctI GAATGC 1 cut(s) 525
PfeI GAWTC 3 cut(s) 76, 296, 826
PflFI GACNNNGTC 1 cut(s) 839
PflMI CCANNNNNTGG 1 cut(s) 677
PkrI GCNGC 3 cut(s) 418, 753, 763
PleI GAGTC 2 cut(s) 310, 914
PluTI GGCGCC 1 cut(s) 785
PpsI GAGTC 2 cut(s) 310, 914
PshBI ATTAAT 1 cut(s) 602
Psp124BI GAGCTC 1 cut(s) 994
Psp6I CCWGG 3 cut(s) 724, 837, 957
PspGI CCWGG 3 cut(s) 724, 837, 957
PspN4I GGNNCC 3 cut(s) 268, 783, 1007
PspPI GGNCC 2 cut(s) 130, 841
PsrI GAACNNNNNNTAC 2 cut(s) 164, 196
PsyI GACNNNGTC 1 cut(s) 839
RsaI GTAC 1 cut(s) 173
RsaNI GTAC 1 cut(s) 172
RseI CAYNNNNRTG 2 cut(s) 465, 936
SacI GAGCTC 1 cut(s) 994
SapI GCTCTTC 1 cut(s) 203
SaqAI TTAA 4 cut(s) 122, 350, 423, 602
SatI GCNGC 3 cut(s) 417, 752, 762
Sau3AI GATC 2 cut(s) 487, 1084
Sau96I GGNCC 2 cut(s) 130, 841
ScaI AGTACT 1 cut(s) 173
SchI GAGTC 2 cut(s) 311, 915
ScrFI CCNGG 3 cut(s) 726, 839, 959
SduI GDGCHC 2 cut(s) 985, 994
SexAI ACCWGGT 3 cut(s) 724, 837, 957
SfaNI GCATC 7 cut(s) 238, 297, 403, 577, 593, 790, 904
SfcI CTRYAG 1 cut(s) 384
SfoI GGCGCC 1 cut(s) 783
SinI GGWCC 2 cut(s) 130, 841
SmiMI CAYNNNNRTG 2 cut(s) 465, 936
SpeI ACTAGT 1 cut(s) 625
Sse9I AATT 8 cut(s) 323, 439, 447, 603, 774, 1021, 1080, 1093
SsiI CCGC 2 cut(s) 417, 752
SspDI GGCGCC 1 cut(s) 781
SspMI CTAG 3 cut(s) 95, 626, 969
SstI GAGCTC 1 cut(s) 994
StyD4I CCNGG 3 cut(s) 724, 837, 957
StyI CCWWGG 2 cut(s) 283, 995
TaaI ACNGT 4 cut(s) 385, 464, 657, 921
TaiI ACGT 1 cut(s) 1108
TasI AATT 8 cut(s) 323, 439, 447, 603, 774, 1021, 1080, 1093
TatI WGTACW 1 cut(s) 171
TauI GCSGC 2 cut(s) 419, 754
TfiI GAWTC 3 cut(s) 76, 296, 826
Tru1I TTAA 4 cut(s) 122, 350, 423, 602
Tru9I TTAA 4 cut(s) 122, 350, 423, 602
TscAI CASTG 3 cut(s) 346, 467, 926
TseI GCWGC 1 cut(s) 761
TspDTI ATGAA 3 cut(s) 144, 308, 606
TspRI CASTG 3 cut(s) 346, 467, 926
Tth111I GACNNNGTC 1 cut(s) 839
Van91I CCANNNNNTGG 1 cut(s) 677
VpaK11BI GGWCC 2 cut(s) 130, 841
VspI ATTAAT 1 cut(s) 602
XapI RAATTY 2 cut(s) 439, 1093
XspI CTAG 3 cut(s) 95, 626, 969
ZrmI AGTACT 1 cut(s) 173
Zsp2I ATGCAT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.