Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001946

Physical Location & Seq

Genomic Coordinates Forward (+)

1200363 .. 1203113

Gene Structure 2751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g01910.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGTGTCTCCCATACGCATCGGAAATTTGAGAAACCCTAATGAGACAATGAGGCTTGTGGTGACGATCTTTGTTGGTGTTGTAATCGGATTCTTTGTAGGAGTATCTTTTCCAACACTTTCGTTAACTAAGATGAATCTTCCTTCCACCCTTTTCCCTTCGATTGATCTTTCGTACATAGAGGAAAAGTACTATGGGTTTTCAACCCAAGCACTGTTGAATGCCTGGTCTTCTTTGAAGGGAAACGAAGTGCGCACTGAAAAATATGTATCTCAGGAGACAAAGATTTGGGTTCCAACTAATCCTCGAGGGGCTGAAAGCCTACCGCCTGGTATCGTTGCATCTGAATCGGATTTCTATCTTCGCCGACTATGGGGCCTGCCCAGTGAGGACTTACTTGTCAAGCCAAAGTATCTTGTAACCTTTACTGTAGGTTATGCTCAGAAAAAAAATGTTGATGCAGCTGTTAAAAAGTTTTCAGAGAATTTCACCATACTCTTGTTTCACTATGATGGTTTGACAAGTGAATGGGATGAATTTGAATGGTCGAAGCGGGCTATCCACGTGAGCATACAGAAGCAAACTAAATGGTGGTATGCCAAGCGGTTTTTGCATCCTGACATTGTGGCACCCTACGAATACATATTTATTTGGGATGAGGATCTCGGTTTGGAGCACTTTAATGCAGAGAAATACATAAAGTTGGTCAAGAAACATGGTTTGGAAATATCACAGCCTGGTTTAGAACCGAATAGCGGGCTAACATGGCAGATGACGAAGCGGAGAGGTGATAGTGAAGTTCACATGCAGACAGAGGAGAAACCTGGTTGGTGCAACGATCCGCATTTGCCACCATGTGCAGCGTTTGTTGAAATTATGGCACCTGTGTTTTCTCGCAACGCATGGCGTTGTGTTTGGCATATGATTCAGAATGACCTGGTCCATGGCTGGGGTCTGGATTTTGCTCTTAGACATTGTGTAGCGCCTGCACATAAGAAAATAGGAGTCGTGGATGCGCAGTGGATTGTCCATCAAGGCGTTCCTTCACTCGGGAACCAAGGGAAAGCGGAGGGTGGAAGAGCGCCATGGGAAGGGGTAAGGGAGAGGTGCAGAAGAGAATGGACGATGTTTCAGGCACGAATGGCAAGCGCCGAGAAAGCATATTTTGAGGAAATGGGAATTGATCCTCCAAGTTCAACAGCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

403

Amino Acids

46.05

Weight (kDa)

7.22

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27470 AT3G27470 AT3G27470 AT3G27470 AT3G27470
fragaria_vesca	FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770
malus_domestica	MD09G1022800.v1.1 MD17G1022000.v1.1
prunus_persica	Prupe.3G294100_v2.0.a1 Prupe.3G294100_v2.0.a1 Prupe.3G294100_v2.0.a1 Prupe.3G294100_v2.0.a1
pyrus_communis	pycom111g01910 pycom17g01910
rosa_chinensis	RchiOBHm_Chr2g0127631 RchiOBHm_Chr2g0173331
rosa_laevigata	RLG00000018948 RLG00000022179
rosa_multiflora	Rmu_co8312885.1_g000001 Rmu_sc0010961.1_g000004 Rmu_sc0033776.1_g000002 Rmu_ssc0000200.1_g000010
rosa_roxburghii	Rroxscaffold_2G00079050 Rroxscaffold_2G00116590 Rroxscaffold_2G00116600
rosa_rugosa	Rorug02G0272400 Rorug02G0567400 Rorug02G0567500
rosa_samantha	Rh2AG324300 Rh2AG647700 Rh2BG658200 Rh2CG311800 Rh2CG623700 Rh2DG351800 Rh2DG672000
rosa_wichuraiana	Rw2G026330 Rw2G053170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	398
AbsI	CCTCGAGG	1 cut(s)	306
Acc16I	TGCGCA	2 cut(s)	254, 1017
AccB1I	GGYRCC	2 cut(s)	628, 880
AciI	CCGC	7 cut(s)	326, 553, 604, 756, 781, 842, 1067
AclWI	GGATC	3 cut(s)	669, 833, 1178
AcsI	RAATTY	3 cut(s)	25, 484, 536
AcvI	CACGTG	1 cut(s)	565
AdeI	CACNNNGTG	1 cut(s)	857
AfaI	GTAC	2 cut(s)	176, 191
AfiI	CCNNNNNNNGG	5 cut(s)	373, 755, 949, 1049, 1091
AgsI	TTSAA	6 cut(s)	204, 220, 238, 542, 872, 1197
AjnI	CCWGG	5 cut(s)	224, 328, 736, 823, 936
AjuI	GAANNNNNNNTTGG	2 cut(s)	704, 736
AluBI	AGCT	2 cut(s)	464, 1202
AluI	AGCT	2 cut(s)	464, 1202
Alw21I	GWGCWC	1 cut(s)	678
Alw26I	GTCTC	3 cut(s)	12, 38, 272
AlwI	GGATC	3 cut(s)	669, 833, 1178
Ama87I	CYCGRG	2 cut(s)	306, 1049
AoxI	GGCC	1 cut(s)	376
ApeKI	GCWGC	2 cut(s)	461, 860
ApoI	RAATTY	3 cut(s)	25, 484, 536
AspLEI	GCGC	5 cut(s)	255, 985, 1018, 1084, 1151
AspS9I	GGNCC	2 cut(s)	376, 940
AsuHPI	GGTGA	3 cut(s)	73, 481, 800
AvaI	CYCGRG	2 cut(s)	306, 1049
AvaII	GGWCC	1 cut(s)	940
BanI	GGYRCC	2 cut(s)	628, 880
BbrPI	CACGTG	1 cut(s)	565
BbsI	GAAGAC	1 cut(s)	222
Bbv12I	GWGCWC	1 cut(s)	678
BbvI	GCAGC	2 cut(s)	473, 872
BccI	CCATC	2 cut(s)	506, 1038
BcgI	CGANNNNNNTGC	2 cut(s)	330, 364
BciT130I	CCWGG	5 cut(s)	226, 330, 738, 825, 938
BcoDI	GTCTC	3 cut(s)	12, 38, 272
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	3 cut(s)	986, 1085, 1152
BisI	GCNGC	2 cut(s)	462, 861
BlsI	GCNGC	2 cut(s)	463, 862
BmcAI	AGTACT	1 cut(s)	191
Bme1390I	CCNGG	5 cut(s)	226, 330, 738, 825, 938
Bme18I	GGWCC	1 cut(s)	940
BmeT110I	CYCGRG	2 cut(s)	306, 1049
BmgT120I	GGNCC	2 cut(s)	376, 940
BmiI	GGNNCC	5 cut(s)	294, 377, 630, 882, 1055
BmrFI	CCNGG	5 cut(s)	226, 330, 738, 825, 938
BmrI	ACTGGG	1 cut(s)	378
BmsI	GCATC	5 cut(s)	27, 350, 448, 622, 1003
BmuI	ACTGGG	1 cut(s)	378
BpiI	GAAGAC	1 cut(s)	222
BsaAI	YACGTR	1 cut(s)	565
BsaBI	GATNNNNATC	2 cut(s)	357, 660
BsaJI	CCNNGG	3 cut(s)	943, 1057, 1085
Bsc4I	CCNNNNNNNGG	5 cut(s)	373, 755, 949, 1049, 1091
Bse1I	ACTGG	1 cut(s)	384
Bse8I	GATNNNNATC	2 cut(s)	357, 660
BseBI	CCWGG	5 cut(s)	226, 330, 738, 825, 938
BseDI	CCNNGG	3 cut(s)	943, 1057, 1085
BseGI	GGATG	4 cut(s)	538, 613, 661, 1018
BseJI	GATNNNNATC	2 cut(s)	357, 660
BseLI	CCNNNNNNNGG	5 cut(s)	373, 755, 949, 1049, 1091
BseMII	CTCAG	2 cut(s)	287, 455
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	830
BseXI	GCAGC	2 cut(s)	473, 872
BseYI	CCCAGC	1 cut(s)	948
BsgI	GTGCAG	3 cut(s)	879, 972, 1129
BshFI	GGCC	1 cut(s)	378
BshNI	GGYRCC	2 cut(s)	628, 880
BsiHKAI	GWGCWC	1 cut(s)	678
BsiHKCI	CYCGRG	2 cut(s)	306, 1049
BslI	CCNNNNNNNGG	5 cut(s)	373, 755, 949, 1049, 1091
BsmAI	GTCTC	3 cut(s)	12, 38, 272
BsmI	GAATGC	1 cut(s)	226
BsnI	GGCC	1 cut(s)	378
BsoBI	CYCGRG	2 cut(s)	306, 1049
Bsp1286I	GDGCHC	1 cut(s)	678
Bsp143I	GATC	5 cut(s)	66, 166, 661, 838, 1183
Bsp19I	CCATGG	2 cut(s)	943, 1085
BspACI	CCGC	7 cut(s)	326, 553, 604, 756, 781, 842, 1067
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	2 cut(s)	286, 454
BspLI	GGNNCC	5 cut(s)	294, 377, 630, 882, 1055
BspPI	GGATC	3 cut(s)	669, 833, 1178
BspQI	GCTCTTC	1 cut(s)	1072
BspT107I	GGYRCC	2 cut(s)	628, 880
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	3 cut(s)	943, 1057, 1085
BssMI	GATC	5 cut(s)	66, 166, 661, 838, 1183
BssT1I	CCWWGG	3 cut(s)	943, 1057, 1085
Bst2UI	CCWGG	5 cut(s)	226, 330, 738, 825, 938
Bst4CI	ACNGT	2 cut(s)	216, 430
Bst6I	CTCTTC	2 cut(s)	1072, 1108
BstBAI	YACGTR	1 cut(s)	565
BstC8I	GCNNGC	5 cut(s)	380, 555, 758, 987, 1147
BstDEI	CTNAG	4 cut(s)	129, 273, 441, 968
BstDSI	CCRYGG	2 cut(s)	943, 1085
BstF5I	GGATG	4 cut(s)	538, 613, 661, 1018
BstH2I	RGCGCY	3 cut(s)	986, 1085, 1152
BstHHI	GCGC	5 cut(s)	255, 985, 1018, 1084, 1151
BstKTI	GATC	5 cut(s)	69, 169, 664, 841, 1186
BstMAI	GTCTC	3 cut(s)	12, 38, 272
BstMBI	GATC	5 cut(s)	66, 166, 661, 838, 1183
BstMWI	GCNNNNNNNGC	4 cut(s)	610, 766, 1142, 1157
BstNI	CCWGG	5 cut(s)	226, 330, 738, 825, 938
BstNSI	RCATGY	1 cut(s)	808
BstSCI	CCNGG	5 cut(s)	224, 328, 736, 823, 936
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	473, 872
BstV2I	GAAGAC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	661
BsuRI	GGCC	1 cut(s)	378
BtgI	CCRYGG	2 cut(s)	943, 1085
BtsCI	GGATG	4 cut(s)	538, 613, 661, 1018
BtsI	GCAGTG	1 cut(s)	1025
BtsIMutI	CAGTG	4 cut(s)	212, 255, 391, 1025
Cac8I	GCNNGC	5 cut(s)	380, 555, 758, 987, 1147
CfoI	GCGC	5 cut(s)	255, 985, 1018, 1084, 1151
Cfr13I	GGNCC	2 cut(s)	376, 940
CsiI	ACCWGGT	2 cut(s)	823, 936
Csp6I	GTAC	2 cut(s)	175, 190
CviAII	CATG	7 cut(s)	716, 765, 805, 855, 903, 944, 1086
CviQI	GTAC	2 cut(s)	175, 190
DdeI	CTNAG	4 cut(s)	129, 273, 441, 968
DpnI	GATC	5 cut(s)	68, 168, 663, 840, 1185
DpnII	GATC	5 cut(s)	66, 166, 661, 838, 1183
DraIII	CACNNNGTG	1 cut(s)	857
DrdI	GACNNNNNNGTC	1 cut(s)	398
DseDI	GACNNNNNNGTC	1 cut(s)	398
Eam1104I	CTCTTC	2 cut(s)	1072, 1108
EarI	CTCTTC	2 cut(s)	1072, 1108
Eco130I	CCWWGG	3 cut(s)	943, 1057, 1085
Eco47I	GGWCC	1 cut(s)	940
Eco72I	CACGTG	1 cut(s)	565
Eco88I	CYCGRG	2 cut(s)	306, 1049
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	5 cut(s)	224, 328, 736, 823, 936
EcoT14I	CCWWGG	3 cut(s)	943, 1057, 1085
ErhI	CCWWGG	3 cut(s)	943, 1057, 1085
FaeI	CATG	7 cut(s)	719, 768, 808, 858, 906, 947, 1089
FatI	CATG	7 cut(s)	715, 764, 804, 854, 902, 943, 1085
FauI	CCCGC	2 cut(s)	546, 749
FauNDI	CATATG	1 cut(s)	921
Fnu4HI	GCNGC	2 cut(s)	462, 861
FokI	GGATG	4 cut(s)	545, 600, 668, 1025
Fsp4HI	GCNGC	2 cut(s)	462, 861
FspAI	RTGCGCAY	1 cut(s)	254
FspI	TGCGCA	2 cut(s)	254, 1017
GlaI	GCGC	5 cut(s)	254, 984, 1017, 1083, 1150
GluI	GCNGC	2 cut(s)	462, 861
GsaI	CCCAGC	1 cut(s)	952
HaeII	RGCGCY	3 cut(s)	986, 1085, 1152
HaeIII	GGCC	1 cut(s)	378
HhaI	GCGC	5 cut(s)	255, 985, 1018, 1084, 1151
Hin1II	CATG	7 cut(s)	719, 768, 808, 858, 906, 947, 1089
Hin6I	GCGC	5 cut(s)	253, 983, 1016, 1082, 1149
HinP1I	GCGC	5 cut(s)	253, 983, 1016, 1082, 1149
HincII	GTYRAC	1 cut(s)	126
HindII	GTYRAC	1 cut(s)	126
HinfI	GANTC	5 cut(s)	90, 136, 347, 925, 1005
HpaI	GTTAAC	1 cut(s)	126
HphI	GGTGA	3 cut(s)	73, 481, 800
Hpy166II	GTNNAC	2 cut(s)	126, 802
Hpy188I	TCNGA	7 cut(s)	23, 89, 346, 352, 444, 481, 930
Hpy188III	TCNNGA	5 cut(s)	275, 617, 709, 956, 1051
Hpy8I	GTNNAC	2 cut(s)	126, 802
HpyAV	CCTTC	5 cut(s)	153, 168, 232, 1053, 1085
HpyCH4III	ACNGT	2 cut(s)	216, 430
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	9 cut(s)	341, 461, 613, 686, 808, 834, 860, 989, 1110
HpyF10VI	GCNNNNNNNGC	4 cut(s)	610, 766, 1142, 1157
HpyF3I	CTNAG	4 cut(s)	129, 273, 441, 968
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	7 cut(s)	719, 768, 808, 858, 906, 947, 1089
HspAI	GCGC	5 cut(s)	253, 983, 1016, 1082, 1149
KspAI	GTTAAC	1 cut(s)	126
Kzo9I	GATC	5 cut(s)	66, 166, 661, 838, 1183
LguI	GCTCTTC	1 cut(s)	1072
LmnI	GCTCC	1 cut(s)	673
Lsp1109I	GCAGC	2 cut(s)	473, 872
LweI	GCATC	5 cut(s)	27, 350, 448, 622, 1003
MabI	ACCWGGT	2 cut(s)	823, 936
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	2 cut(s)	61, 418
MalI	GATC	5 cut(s)	68, 168, 663, 840, 1185
MboI	GATC	5 cut(s)	66, 166, 661, 838, 1183
MboII	GAAGA	5 cut(s)	131, 222, 353, 1089, 1125
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	1 cut(s)	678
MluCI	AATT	5 cut(s)	25, 484, 536, 873, 1179
MlyI	GAGTC	1 cut(s)	1014
MmeI	TCCRAC	2 cut(s)	137, 320
MseI	TTAA	3 cut(s)	125, 468, 681
MslI	CAYNNNNRTG	2 cut(s)	510, 681
MspA1I	CMGCKG	1 cut(s)	464
MspR9I	CCNGG	5 cut(s)	226, 330, 738, 825, 938
Mva1269I	GAATGC	1 cut(s)	226
MvaI	CCWGG	5 cut(s)	226, 330, 738, 825, 938
MwoI	GCNNNNNNNGC	4 cut(s)	610, 766, 1142, 1157
NcoI	CCATGG	2 cut(s)	943, 1085
NdeI	CATATG	1 cut(s)	921
NdeII	GATC	5 cut(s)	66, 166, 661, 838, 1183
NlaIII	CATG	7 cut(s)	719, 768, 808, 858, 906, 947, 1089
NlaIV	GGNNCC	5 cut(s)	294, 377, 630, 882, 1055
NmeAIII	GCCGAG	1 cut(s)	1177
NmuCI	GTSAC	1 cut(s)	61
NsbI	TGCGCA	2 cut(s)	254, 1017
NspI	RCATGY	1 cut(s)	808
PaeR7I	CTCGAG	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	1072
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	4 cut(s)	90, 136, 347, 925
PflFI	GACNNNGTC	1 cut(s)	938
PkrI	GCNGC	2 cut(s)	463, 862
PleI	GAGTC	1 cut(s)	1013
PmaCI	CACGTG	1 cut(s)	565
PmlI	CACGTG	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	1013
Ppu21I	YACGTR	1 cut(s)	565
Psp6I	CCWGG	5 cut(s)	224, 328, 736, 823, 936
PspCI	CACGTG	1 cut(s)	565
PspFI	CCCAGC	1 cut(s)	948
PspGI	CCWGG	5 cut(s)	224, 328, 736, 823, 936
PspN4I	GGNNCC	5 cut(s)	294, 377, 630, 882, 1055
PspPI	GGNCC	2 cut(s)	376, 940
PspXI	VCTCGAGB	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	661
PsyI	GACNNNGTC	1 cut(s)	938
PvuII	CAGCTG	1 cut(s)	464
RsaI	GTAC	2 cut(s)	176, 191
RsaNI	GTAC	2 cut(s)	175, 190
RseI	CAYNNNNRTG	2 cut(s)	510, 681
SapI	GCTCTTC	1 cut(s)	1072
SaqAI	TTAA	3 cut(s)	125, 468, 681
SatI	GCNGC	2 cut(s)	462, 861
Sau3AI	GATC	5 cut(s)	66, 166, 661, 838, 1183
Sau96I	GGNCC	2 cut(s)	376, 940
ScaI	AGTACT	1 cut(s)	191
SchI	GAGTC	1 cut(s)	1014
ScrFI	CCNGG	5 cut(s)	226, 330, 738, 825, 938
SduI	GDGCHC	1 cut(s)	678
SexAI	ACCWGGT	2 cut(s)	823, 936
SfaNI	GCATC	5 cut(s)	27, 350, 448, 622, 1003
SfcI	CTRYAG	1 cut(s)	429
Sfr274I	CTCGAG	1 cut(s)	306
SinI	GGWCC	1 cut(s)	940
SlaI	CTCGAG	1 cut(s)	306
SmiMI	CAYNNNNRTG	2 cut(s)	510, 681
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
Sse9I	AATT	5 cut(s)	25, 484, 536, 873, 1179
SsiI	CCGC	7 cut(s)	326, 553, 604, 756, 781, 842, 1067
StyD4I	CCNGG	5 cut(s)	224, 328, 736, 823, 936
StyI	CCWWGG	3 cut(s)	943, 1057, 1085
TaaI	ACNGT	2 cut(s)	216, 430
TaiI	ACGT	1 cut(s)	567
TaqI	TCGA	3 cut(s)	161, 307, 548
TasI	AATT	5 cut(s)	25, 484, 536, 873, 1179
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	4 cut(s)	90, 136, 347, 925
Tru1I	TTAA	3 cut(s)	125, 468, 681
Tru9I	TTAA	3 cut(s)	125, 468, 681
TscAI	CASTG	4 cut(s)	219, 262, 391, 1025
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	2 cut(s)	461, 860
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	2 cut(s)	149, 549
TspRI	CASTG	4 cut(s)	219, 262, 391, 1025
Tth111I	GACNNNGTC	1 cut(s)	938
VpaK11BI	GGWCC	1 cut(s)	940
XapI	RAATTY	3 cut(s)	25, 484, 536
XceI	RCATGY	1 cut(s)	808
XhoI	CTCGAG	1 cut(s)	306
ZrmI	AGTACT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.