Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001946

Physical Location & Seq

Genomic Coordinates Forward (+)

46652998 .. 46655716

Gene Structure 2719 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG324300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGATGCAAAGTGTCAATAAATCTGAGTCAGATTTATATCTTCATCAATTATGGGGTCTGCCCAGTGAGGACTTAACCATCAAGCCAAAATATCTTGTAACCTTTAGTGTAGGCCATGCTCAGAAAAAAAATATAGATGCCGCAGTTAAAAAGACAAGTGAATGGCATGAGTTTGAGAGGTCAAAGCAGGCTATCCATGGGAGCATTCAGAAGCAAACTAAATGGTGGTGTGCCAAGCGTTTTTTGCATCCTGAAATTGTGGCATCCTATGAATACATATTAATTTGGGATGAGGATCTCGGTGTGGAGCACTTTAATGCAGAGGAATACATAAAACTAGTAAGGAAATATGGGAGAGGTCATAGTGAAGTTCACATGCAGACAGAGGAGAAACCTGGTTGGTGTAATGATCCGCATTTGCCGCCCTGTGCAGCGTTTGTAGAAATTATGGCGCCTGTGTTTTCTCGGGATGCATGGTGTTGTGTTTGGCATATGATTCAGAATGACCTGGTCCATGGTTGGGGTCTGGATTTTGCTCTTAGACGCTGTGTAGAGCCTGCACATGAGAAAATAGGAGTCGTAGATGCACAGTGGATTGTCCATCAAGGTGTTCCTTCACTTCTAAACCAGGCCCAAGCAGAGAGTGGTAGAGCGCCATGGGAAGGGGTAGGGGAGAGGTGTAGAAGAGAATGGACTATGTTTCAAGTAGGAATGGTTGGTGCAGAGAGCATATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

245

Amino Acids

28.25

Weight (kDa)

6.11

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF707	PF05212	3 - 118	2.9e-39	Protein of unknown function (DUF707)
DUF707	PF05212	121 - 239	1.3e-47	Protein of unknown function (DUF707)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001946)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G27470 AT3G27470 AT3G27470 AT3G27470 AT3G27470
fragaria_vesca	FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770 FvH4_6g51770
malus_domestica	MD09G1022800.v1.1 MD17G1022000.v1.1
prunus_persica	Prupe.3G294100_v2.0.a1 Prupe.3G294100_v2.0.a1 Prupe.3G294100_v2.0.a1 Prupe.3G294100_v2.0.a1
pyrus_communis	pycom111g01910 pycom17g01910
rosa_chinensis	RchiOBHm_Chr2g0127631 RchiOBHm_Chr2g0173331
rosa_laevigata	RLG00000018948 RLG00000022179
rosa_multiflora	Rmu_co8312885.1_g000001 Rmu_sc0010961.1_g000004 Rmu_sc0033776.1_g000002 Rmu_ssc0000200.1_g000010
rosa_roxburghii	Rroxscaffold_2G00079050 Rroxscaffold_2G00116590 Rroxscaffold_2G00116600
rosa_rugosa	Rorug02G0272400 Rorug02G0567400 Rorug02G0567500
rosa_samantha	Rh2AG324300 Rh2AG647700 Rh2BG658200 Rh2CG311800 Rh2CG623700 Rh2DG351800 Rh2DG672000
rosa_wichuraiana	Rw2G026330 Rw2G053170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	451
AciI	CCGC	3 cut(s)	141, 413, 422
AclWI	GGATC	2 cut(s)	303, 404
AcyI	GRCGYC	1 cut(s)	452
AfiI	CCNNNNNNNGG	2 cut(s)	520, 662
AgsI	TTSAA	1 cut(s)	704
AhlI	ACTAGT	1 cut(s)	337
AjnI	CCWGG	3 cut(s)	394, 507, 627
Alw21I	GWGCWC	1 cut(s)	312
AlwI	GGATC	2 cut(s)	303, 404
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	2 cut(s)	112, 630
ApeKI	GCWGC	1 cut(s)	431
AseI	ATTAAT	1 cut(s)	281
AspLEI	GCGC	2 cut(s)	454, 655
AspS9I	GGNCC	2 cut(s)	511, 631
AvaI	CYCGRG	1 cut(s)	465
AvaII	GGWCC	1 cut(s)	511
BanI	GGYRCC	1 cut(s)	451
Bbv12I	GWGCWC	1 cut(s)	312
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	2 cut(s)	86, 609
BciT130I	CCWGG	3 cut(s)	396, 509, 629
BcuI	ACTAGT	1 cut(s)	337
BfaI	CTAG	1 cut(s)	338
BfoI	RGCGCY	2 cut(s)	455, 656
BisI	GCNGC	3 cut(s)	141, 422, 432
BlsI	GCNGC	3 cut(s)	142, 423, 433
Bme1390I	CCNGG	3 cut(s)	396, 509, 629
Bme18I	GGWCC	1 cut(s)	511
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	2 cut(s)	511, 631
BmiI	GGNNCC	1 cut(s)	453
BmrFI	CCNGG	3 cut(s)	396, 509, 629
BmrI	ACTGGG	1 cut(s)	57
BmsI	GCATC	5 cut(s)	127, 256, 272, 460, 574
BmuI	ACTGGG	1 cut(s)	57
BsaBI	GATNNNNATC	2 cut(s)	36, 294
BsaHI	GRCGYC	1 cut(s)	452
BsaJI	CCNNGG	3 cut(s)	196, 514, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	520, 662
Bse1I	ACTGG	1 cut(s)	63
Bse8I	GATNNNNATC	2 cut(s)	36, 294
BseBI	CCWGG	3 cut(s)	396, 509, 629
BseDI	CCNNGG	3 cut(s)	196, 514, 656
BseGI	GGATG	4 cut(s)	247, 263, 295, 475
BseJI	GATNNNNATC	2 cut(s)	36, 294
BseLI	CCNNNNNNNGG	2 cut(s)	520, 662
BseMII	CTCAG	2 cut(s)	15, 134
BseNI	ACTGG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	401
BseXI	GCAGC	1 cut(s)	443
BsgI	GTGCAG	2 cut(s)	450, 543
BshFI	GGCC	2 cut(s)	114, 632
BshNI	GGYRCC	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	312
BsiHKCI	CYCGRG	1 cut(s)	465
BslI	CCNNNNNNNGG	2 cut(s)	520, 662
BsmI	GAATGC	1 cut(s)	204
BsnI	GGCC	2 cut(s)	114, 632
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	295, 409
Bsp19I	CCATGG	3 cut(s)	196, 514, 656
BspACI	CCGC	3 cut(s)	141, 413, 422
BspANI	GGCC	2 cut(s)	114, 632
BspCNI	CTCAG	2 cut(s)	16, 133
BspLI	GGNNCC	1 cut(s)	453
BspPI	GGATC	2 cut(s)	303, 404
BspT107I	GGYRCC	1 cut(s)	451
BsrI	ACTGG	1 cut(s)	63
BssECI	CCNNGG	3 cut(s)	196, 514, 656
BssMI	GATC	2 cut(s)	295, 409
BssNI	GRCGYC	1 cut(s)	452
BssT1I	CCWWGG	3 cut(s)	196, 514, 656
Bst2UI	CCWGG	3 cut(s)	396, 509, 629
Bst4CI	ACNGT	1 cut(s)	591
Bst6I	CTCTTC	1 cut(s)	679
BstACI	GRCGYC	1 cut(s)	452
BstC8I	GCNNGC	2 cut(s)	189, 558
BstDEI	CTNAG	3 cut(s)	24, 120, 539
BstDSI	CCRYGG	3 cut(s)	196, 514, 656
BstF5I	GGATG	4 cut(s)	247, 263, 295, 475
BstH2I	RGCGCY	2 cut(s)	455, 656
BstHHI	GCGC	2 cut(s)	454, 655
BstKTI	GATC	2 cut(s)	298, 412
BstMBI	GATC	2 cut(s)	295, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	244, 421
BstNI	CCWGG	3 cut(s)	396, 509, 629
BstNSI	RCATGY	1 cut(s)	379
BstSCI	CCNGG	3 cut(s)	394, 507, 627
BstV1I	GCAGC	1 cut(s)	443
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	2 cut(s)	114, 632
BtgI	CCRYGG	3 cut(s)	196, 514, 656
BtsCI	GGATG	4 cut(s)	247, 263, 295, 475
BtsIMutI	CAGTG	2 cut(s)	70, 596
Cac8I	GCNNGC	2 cut(s)	189, 558
CfoI	GCGC	2 cut(s)	454, 655
Cfr13I	GGNCC	2 cut(s)	511, 631
CseI	GACGC	1 cut(s)	552
CsiI	ACCWGGT	2 cut(s)	394, 507
CviAII	CATG	8 cut(s)	116, 167, 197, 376, 474, 515, 563, 657
CviJI	RGCY	5 cut(s)	85, 114, 191, 556, 632
CviKI_1	RGCY	5 cut(s)	85, 114, 191, 556, 632
DdeI	CTNAG	3 cut(s)	24, 120, 539
DinI	GGCGCC	1 cut(s)	453
DpnI	GATC	2 cut(s)	297, 411
DpnII	GATC	2 cut(s)	295, 409
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
Eco130I	CCWWGG	3 cut(s)	196, 514, 656
Eco47I	GGWCC	1 cut(s)	511
Eco88I	CYCGRG	1 cut(s)	465
EcoRII	CCWGG	3 cut(s)	394, 507, 627
EcoT14I	CCWWGG	3 cut(s)	196, 514, 656
EcoT22I	ATGCAT	1 cut(s)	475
EgeI	GGCGCC	1 cut(s)	453
EheI	GGCGCC	1 cut(s)	453
ErhI	CCWWGG	3 cut(s)	196, 514, 656
FaeI	CATG	8 cut(s)	119, 170, 200, 379, 477, 518, 566, 660
FatI	CATG	8 cut(s)	115, 166, 196, 375, 473, 514, 562, 656
FauNDI	CATATG	1 cut(s)	492
Fnu4HI	GCNGC	3 cut(s)	141, 422, 432
FokI	GGATG	4 cut(s)	234, 250, 302, 482
Fsp4HI	GCNGC	3 cut(s)	141, 422, 432
FspBI	CTAG	1 cut(s)	338
GlaI	GCGC	2 cut(s)	453, 654
GluI	GCNGC	3 cut(s)	141, 422, 432
HaeII	RGCGCY	2 cut(s)	455, 656
HaeIII	GGCC	2 cut(s)	114, 632
HgaI	GACGC	1 cut(s)	552
HhaI	GCGC	2 cut(s)	454, 655
Hin1I	GRCGYC	1 cut(s)	452
Hin1II	CATG	8 cut(s)	119, 170, 200, 379, 477, 518, 566, 660
Hin6I	GCGC	2 cut(s)	452, 653
HinP1I	GCGC	2 cut(s)	452, 653
HinfI	GANTC	3 cut(s)	26, 496, 576
Hpy166II	GTNNAC	1 cut(s)	373
Hpy188I	TCNGA	5 cut(s)	25, 31, 123, 210, 501
Hpy188III	TCNNGA	4 cut(s)	251, 467, 527, 735
Hpy8I	GTNNAC	1 cut(s)	373
HpyAV	CCTTC	2 cut(s)	624, 656
HpyCH4III	ACNGT	1 cut(s)	591
HpyCH4V	TGCA	9 cut(s)	7, 247, 320, 379, 431, 473, 560, 587, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	244, 421
HpyF3I	CTNAG	3 cut(s)	24, 120, 539
Hsp92I	GRCGYC	1 cut(s)	452
Hsp92II	CATG	8 cut(s)	119, 170, 200, 379, 477, 518, 566, 660
HspAI	GCGC	2 cut(s)	452, 653
KasI	GGCGCC	1 cut(s)	451
Kzo9I	GATC	2 cut(s)	295, 409
LmnI	GCTCC	2 cut(s)	201, 307
Lsp1109I	GCAGC	1 cut(s)	443
LweI	GCATC	5 cut(s)	127, 256, 272, 460, 574
MabI	ACCWGGT	2 cut(s)	394, 507
MaeI	CTAG	1 cut(s)	338
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	2 cut(s)	297, 411
MboI	GATC	2 cut(s)	295, 409
MboII	GAAGA	2 cut(s)	32, 696
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	4 cut(s)	47, 255, 282, 444
Mly113I	GGCGCC	1 cut(s)	452
MlyI	GAGTC	2 cut(s)	35, 585
MnlI	CCTC	7 cut(s)	61, 171, 286, 316, 350, 379, 669
Mph1103I	ATGCAT	1 cut(s)	475
MseI	TTAA	4 cut(s)	74, 147, 281, 315
MslI	CAYNNNNRTG	2 cut(s)	315, 606
MspR9I	CCNGG	3 cut(s)	396, 509, 629
Mva1269I	GAATGC	1 cut(s)	204
MvaI	CCWGG	3 cut(s)	396, 509, 629
MwoI	GCNNNNNNNGC	2 cut(s)	244, 421
NarI	GGCGCC	1 cut(s)	452
NcoI	CCATGG	3 cut(s)	196, 514, 656
NdeI	CATATG	1 cut(s)	492
NdeII	GATC	2 cut(s)	295, 409
NlaIII	CATG	8 cut(s)	119, 170, 200, 379, 477, 518, 566, 660
NlaIV	GGNNCC	1 cut(s)	453
NsiI	ATGCAT	1 cut(s)	475
NspI	RCATGY	1 cut(s)	379
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	496
PflFI	GACNNNGTC	1 cut(s)	509
PkrI	GCNGC	3 cut(s)	142, 423, 433
PleI	GAGTC	2 cut(s)	34, 584
PluTI	GGCGCC	1 cut(s)	455
PpsI	GAGTC	2 cut(s)	34, 584
PshBI	ATTAAT	1 cut(s)	281
Psp6I	CCWGG	3 cut(s)	394, 507, 627
PspGI	CCWGG	3 cut(s)	394, 507, 627
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	2 cut(s)	511, 631
PsuI	RGATCY	1 cut(s)	295
PsyI	GACNNNGTC	1 cut(s)	509
RseI	CAYNNNNRTG	2 cut(s)	315, 606
SaqAI	TTAA	4 cut(s)	74, 147, 281, 315
SatI	GCNGC	3 cut(s)	141, 422, 432
Sau3AI	GATC	2 cut(s)	295, 409
Sau96I	GGNCC	2 cut(s)	511, 631
SchI	GAGTC	2 cut(s)	35, 585
ScrFI	CCNGG	3 cut(s)	396, 509, 629
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	7 cut(s)	104, 182, 361, 397, 510, 610, 680
SexAI	ACCWGGT	2 cut(s)	394, 507
SfaNI	GCATC	5 cut(s)	127, 256, 272, 460, 574
SfoI	GGCGCC	1 cut(s)	453
SinI	GGWCC	1 cut(s)	511
SmiMI	CAYNNNNRTG	2 cut(s)	315, 606
SpeI	ACTAGT	1 cut(s)	337
Sse9I	AATT	4 cut(s)	47, 255, 282, 444
SsiI	CCGC	3 cut(s)	141, 413, 422
SspDI	GGCGCC	1 cut(s)	451
SspMI	CTAG	1 cut(s)	338
StyD4I	CCNGG	3 cut(s)	394, 507, 627
StyI	CCWWGG	3 cut(s)	196, 514, 656
TaaI	ACNGT	1 cut(s)	591
TasI	AATT	4 cut(s)	47, 255, 282, 444
TauI	GCSGC	2 cut(s)	143, 424
TfiI	GAWTC	1 cut(s)	496
Tru1I	TTAA	4 cut(s)	74, 147, 281, 315
Tru9I	TTAA	4 cut(s)	74, 147, 281, 315
TscAI	CASTG	2 cut(s)	70, 596
TseI	GCWGC	1 cut(s)	431
TspDTI	ATGAA	2 cut(s)	32, 285
TspRI	CASTG	2 cut(s)	70, 596
Tth111I	GACNNNGTC	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	511
VspI	ATTAAT	1 cut(s)	281
XceI	RCATGY	1 cut(s)	379
XcmI	CCANNNNNNNNNTGG	1 cut(s)	641
XspI	CTAG	1 cut(s)	338
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.