RchiOBHm_Chr2g0127631

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001946
Physical Location & Seq
Reverse (-)
42495057 .. 42501700
6644 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49948

Sequence Viewer

Length: 1038 bp
ATGAGGTTTGTTGCGACAGCTTTTGTGGCGATTCTGTTTGGCTTCTTTCTAGGAGTGTCATTTCCAACCATTTCGTTAACTAAGATGAATTTCCCACCCAGCCATTTTTCTTCCATTGATATTTCATACATAGAGGAGAAGTACTCGGGGTTCTCAACCCAAGCACTGGTGAATGCCTGGTCTTCTTTGAAGAGCAACAGAGATATCTCTGTAAAATACATCCCTAATGATGCAAAGGCAGATTTGGGTTCCAAACAAATCCTCCTTGGCATCGTAGAATCTGAGTCAGATTTATATCTTCATCAATTATGGGGTCTGCCCAGTGAAGACTTAACCATCAAGCCAAAATATCTTGTAACCTTTACTGTAGGCCATGCTCAGAAAAAAAATATAGATGCCGCAGTTAAAAATACAAGTGAATGGGATCAGTTTGAGGGGTCAAAGCAGGCTATCCATGTGAGCATTCAGAAGCAAACTAAATGGTGGTGTGCCAAGCGTTTTTTGCATCCTGACATTGTGGCATCCTATGAATACATATTAATTTGGGATGAGGATATCGGTGTGGAGCACTTTAATGCAGAGGAATACATAAAACTAGTAAGGAAATATGGGTTGGAAGTATCACAGTCTGGTTTAGAACCAAATAATGGGCTAACATGGCAGATGACAAAGGAGAGGCAGACAGAGGAGAAACCTGGTTGGTGTAATGATTTGCATTTGCCGCCCTGTGCAGCGTTTGTAGAAATTATGGCGCCTGTGTTTTCTCGGGATGCATGGTGTTGTGTTTGGCATATGATTCAGAATGACCTGGTCCATGTTAGGGGTCTGGATTTTGCTCTTAGACGCTGTGTAGAGCCTGCACATGAGAAAATAGGAGTCGTAGATGCACAGTGGATTGTCCATCAAGGTGTTCCTTCACTTCTAAACCAGGCCCAAGCAGAGCACTTAGAGCTCCATGGGAAGGGGTCGGAATGGTTGGTGCAGAAAGCATATTTTGAAGAAATGGGAATTGATCCCCCAAATTCAACAGCACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

345

Amino Acids

39.27

Weight (kDa)

5.72

Isoelectric Point (pI)

33.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 82 - 335 5e-93 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 751
AccB7I CCANNNNNTGG 2 cut(s) 166, 647
AciI CCGC 2 cut(s) 399, 722
AclWI GGATC 2 cut(s) 432, 1007
AcsI RAATTY 2 cut(s) 88, 1021
AcyI GRCGYC 1 cut(s) 752
AfaI GTAC 1 cut(s) 143
AfiI CCNNNNNNNGG 4 cut(s) 166, 647, 820, 961
AgsI TTSAA 3 cut(s) 190, 998, 1026
AhlI ACTAGT 1 cut(s) 595
AjnI CCWGG 4 cut(s) 176, 694, 807, 927
AjuI GAANNNNNNNTTGG 2 cut(s) 596, 628
AluBI AGCT 2 cut(s) 20, 952
AluI AGCT 2 cut(s) 20, 952
Alw21I GWGCWC 3 cut(s) 570, 945, 954
AlwI GGATC 2 cut(s) 432, 1007
Ama87I CYCGRG 2 cut(s) 145, 765
AoxI GGCC 2 cut(s) 370, 930
ApeKI GCWGC 1 cut(s) 731
ApoI RAATTY 2 cut(s) 88, 1021
AseI ATTAAT 1 cut(s) 539
AspLEI GCGC 1 cut(s) 754
AspS9I GGNCC 2 cut(s) 811, 931
AsuHPI GGTGA 1 cut(s) 181
AvaI CYCGRG 2 cut(s) 145, 765
AvaII GGWCC 1 cut(s) 811
BanI GGYRCC 1 cut(s) 751
BanII GRGCYC 1 cut(s) 954
BbsI GAAGAC 2 cut(s) 174, 333
Bbv12I GWGCWC 3 cut(s) 570, 945, 954
BbvI GCAGC 1 cut(s) 743
BccI CCATC 2 cut(s) 344, 909
BciT130I CCWGG 4 cut(s) 178, 696, 809, 929
BcuI ACTAGT 1 cut(s) 595
BfaI CTAG 2 cut(s) 50, 596
BfmI CTRYAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 755
BisI GCNGC 3 cut(s) 399, 722, 732
BlsI GCNGC 3 cut(s) 400, 723, 733
BmcAI AGTACT 1 cut(s) 143
Bme1390I CCNGG 4 cut(s) 178, 696, 809, 929
Bme18I GGWCC 1 cut(s) 811
BmeT110I CYCGRG 2 cut(s) 145, 765
BmgT120I GGNCC 2 cut(s) 811, 931
BmiI GGNNCC 2 cut(s) 250, 753
BmrFI CCNGG 4 cut(s) 178, 696, 809, 929
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 7 cut(s) 220, 279, 385, 514, 530, 760, 874
BmuI ACTGGG 1 cut(s) 315
BpiI GAAGAC 2 cut(s) 174, 333
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BsaBI GATNNNNATC 1 cut(s) 294
BsaHI GRCGYC 1 cut(s) 752
BsaJI CCNNGG 2 cut(s) 265, 955
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bsc4I CCNNNNNNNGG 4 cut(s) 166, 647, 820, 961
Bse1I ACTGG 2 cut(s) 171, 321
Bse8I GATNNNNATC 1 cut(s) 294
BseBI CCWGG 4 cut(s) 178, 696, 809, 929
BseDI CCNNGG 2 cut(s) 265, 955
BseGI GGATG 5 cut(s) 219, 505, 521, 553, 775
BseJI GATNNNNATC 1 cut(s) 294
BseLI CCNNNNNNNGG 4 cut(s) 166, 647, 820, 961
BseMII CTCAG 2 cut(s) 273, 392
BseNI ACTGG 2 cut(s) 171, 321
BseRI GAGGAG 2 cut(s) 149, 701
BseXI GCAGC 1 cut(s) 743
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 3 cut(s) 750, 843, 1001
BshFI GGCC 2 cut(s) 372, 932
BshNI GGYRCC 1 cut(s) 751
BsiHKAI GWGCWC 3 cut(s) 570, 945, 954
BsiHKCI CYCGRG 2 cut(s) 145, 765
BslI CCNNNNNNNGG 4 cut(s) 166, 647, 820, 961
BsmI GAATGC 2 cut(s) 178, 462
BsnI GGCC 2 cut(s) 372, 932
BsoBI CYCGRG 2 cut(s) 145, 765
Bsp1286I GDGCHC 3 cut(s) 570, 945, 954
Bsp143I GATC 2 cut(s) 424, 1012
Bsp19I CCATGG 1 cut(s) 955
BspACI CCGC 2 cut(s) 399, 722
BspANI GGCC 2 cut(s) 372, 932
BspCNI CTCAG 2 cut(s) 274, 391
BspLI GGNNCC 2 cut(s) 250, 753
BspPI GGATC 2 cut(s) 432, 1007
BspQI GCTCTTC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 751
BsrI ACTGG 2 cut(s) 171, 321
BssECI CCNNGG 2 cut(s) 265, 955
BssMI GATC 2 cut(s) 424, 1012
BssNI GRCGYC 1 cut(s) 752
BssT1I CCWWGG 2 cut(s) 265, 955
Bst2UI CCWGG 4 cut(s) 178, 696, 809, 929
Bst4CI ACNGT 3 cut(s) 367, 627, 891
Bst6I CTCTTC 1 cut(s) 185
BstACI GRCGYC 1 cut(s) 752
BstC8I GCNNGC 2 cut(s) 447, 858
BstDEI CTNAG 5 cut(s) 81, 282, 378, 839, 946
BstDSI CCRYGG 1 cut(s) 955
BstF5I GGATG 5 cut(s) 219, 505, 521, 553, 775
BstH2I RGCGCY 1 cut(s) 755
BstHHI GCGC 1 cut(s) 754
BstKTI GATC 2 cut(s) 427, 1015
BstMBI GATC 2 cut(s) 424, 1012
BstMWI GCNNNNNNNGC 5 cut(s) 26, 502, 658, 721, 949
BstNI CCWGG 4 cut(s) 178, 696, 809, 929
BstSCI CCNGG 4 cut(s) 176, 694, 807, 927
BstSFI CTRYAG 1 cut(s) 366
BstV1I GCAGC 1 cut(s) 743
BstV2I GAAGAC 2 cut(s) 174, 333
BsuRI GGCC 2 cut(s) 372, 932
BtgI CCRYGG 1 cut(s) 955
BtsCI GGATG 5 cut(s) 219, 505, 521, 553, 775
BtsIMutI CAGTG 3 cut(s) 164, 328, 896
Cac8I GCNNGC 2 cut(s) 447, 858
CfoI GCGC 1 cut(s) 754
Cfr13I GGNCC 2 cut(s) 811, 931
CseI GACGC 1 cut(s) 852
CsiI ACCWGGT 2 cut(s) 694, 807
Csp6I GTAC 1 cut(s) 142
CviAII CATG 7 cut(s) 374, 455, 657, 774, 815, 863, 956
CviQI GTAC 1 cut(s) 142
DdeI CTNAG 5 cut(s) 81, 282, 378, 839, 946
DinI GGCGCC 1 cut(s) 753
DpnI GATC 2 cut(s) 426, 1014
DpnII GATC 2 cut(s) 424, 1012
Eam1104I CTCTTC 1 cut(s) 185
EarI CTCTTC 1 cut(s) 185
Ecl136II GAGCTC 1 cut(s) 952
Eco130I CCWWGG 2 cut(s) 265, 955
Eco24I GRGCYC 1 cut(s) 954
Eco32I GATATC 2 cut(s) 205, 556
Eco47I GGWCC 1 cut(s) 811
Eco53kI GAGCTC 1 cut(s) 952
Eco88I CYCGRG 2 cut(s) 145, 765
EcoICRI GAGCTC 1 cut(s) 952
EcoRII CCWGG 4 cut(s) 176, 694, 807, 927
EcoRV GATATC 2 cut(s) 205, 556
EcoT14I CCWWGG 2 cut(s) 265, 955
EcoT22I ATGCAT 1 cut(s) 775
EcoT38I GRGCYC 1 cut(s) 954
EgeI GGCGCC 1 cut(s) 753
EheI GGCGCC 1 cut(s) 753
ErhI CCWWGG 2 cut(s) 265, 955
FaeI CATG 7 cut(s) 377, 458, 660, 777, 818, 866, 959
FatI CATG 7 cut(s) 373, 454, 656, 773, 814, 862, 955
FauNDI CATATG 1 cut(s) 792
Fnu4HI GCNGC 3 cut(s) 399, 722, 732
FokI GGATG 5 cut(s) 206, 492, 508, 560, 782
FriOI GRGCYC 1 cut(s) 954
Fsp4HI GCNGC 3 cut(s) 399, 722, 732
FspBI CTAG 2 cut(s) 50, 596
GlaI GCGC 1 cut(s) 753
GluI GCNGC 3 cut(s) 399, 722, 732
GsaI CCCAGC 1 cut(s) 102
HaeII RGCGCY 1 cut(s) 755
HaeIII GGCC 2 cut(s) 372, 932
HgaI GACGC 1 cut(s) 852
HhaI GCGC 1 cut(s) 754
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 7 cut(s) 377, 458, 660, 777, 818, 866, 959
Hin6I GCGC 1 cut(s) 752
HinP1I GCGC 1 cut(s) 752
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HinfI GANTC 5 cut(s) 31, 278, 284, 796, 876
HpaI GTTAAC 1 cut(s) 78
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 6 cut(s) 283, 289, 381, 468, 801, 970
Hpy188III TCNNGA 3 cut(s) 509, 767, 827
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 2 cut(s) 924, 955
HpyCH4III ACNGT 3 cut(s) 367, 627, 891
HpyCH4IV ACGT 1 cut(s) 1033
HpyCH4V TGCA 9 cut(s) 233, 505, 578, 715, 731, 773, 860, 887, 982
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 502, 658, 721, 949
HpyF3I CTNAG 5 cut(s) 81, 282, 378, 839, 946
HpySE526I ACGT 1 cut(s) 1033
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 7 cut(s) 377, 458, 660, 777, 818, 866, 959
HspAI GCGC 1 cut(s) 752
KasI GGCGCC 1 cut(s) 751
KspAI GTTAAC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 424, 1012
LguI GCTCTTC 1 cut(s) 185
LmnI GCTCC 2 cut(s) 565, 957
Lsp1109I GCAGC 1 cut(s) 743
LweI GCATC 7 cut(s) 220, 279, 385, 514, 530, 760, 874
MabI ACCWGGT 2 cut(s) 694, 807
MaeI CTAG 2 cut(s) 50, 596
MaeII ACGT 1 cut(s) 1033
MaeIII GTNAC 1 cut(s) 355
MalI GATC 2 cut(s) 426, 1014
MboI GATC 2 cut(s) 424, 1012
MboII GAAGA 6 cut(s) 102, 174, 202, 290, 338, 1010
MhlI GDGCHC 3 cut(s) 570, 945, 954
MluCI AATT 6 cut(s) 88, 305, 540, 744, 1008, 1021
Mly113I GGCGCC 1 cut(s) 752
MlyI GAGTC 2 cut(s) 293, 885
MmeI TCCRAC 3 cut(s) 89, 594, 948
MnlI CCTC 7 cut(s) 127, 272, 427, 544, 574, 669, 679
Mph1103I ATGCAT 1 cut(s) 775
MseI TTAA 5 cut(s) 77, 332, 405, 539, 573
MslI CAYNNNNRTG 2 cut(s) 573, 906
MspR9I CCNGG 4 cut(s) 178, 696, 809, 929
Mva1269I GAATGC 2 cut(s) 178, 462
MvaI CCWGG 4 cut(s) 178, 696, 809, 929
MwoI GCNNNNNNNGC 5 cut(s) 26, 502, 658, 721, 949
NarI GGCGCC 1 cut(s) 752
NcoI CCATGG 1 cut(s) 955
NdeI CATATG 1 cut(s) 792
NdeII GATC 2 cut(s) 424, 1012
NlaIII CATG 7 cut(s) 377, 458, 660, 777, 818, 866, 959
NlaIV GGNNCC 2 cut(s) 250, 753
NsiI ATGCAT 1 cut(s) 775
PciSI GCTCTTC 1 cut(s) 185
PctI GAATGC 2 cut(s) 178, 462
PfeI GAWTC 3 cut(s) 31, 278, 796
PflFI GACNNNGTC 1 cut(s) 809
PflMI CCANNNNNTGG 2 cut(s) 166, 647
PkrI GCNGC 3 cut(s) 400, 723, 733
PleI GAGTC 2 cut(s) 292, 884
PluTI GGCGCC 1 cut(s) 755
PpsI GAGTC 2 cut(s) 292, 884
PshBI ATTAAT 1 cut(s) 539
Psp124BI GAGCTC 1 cut(s) 954
Psp6I CCWGG 4 cut(s) 176, 694, 807, 927
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 4 cut(s) 176, 694, 807, 927
PspN4I GGNNCC 2 cut(s) 250, 753
PspPI GGNCC 2 cut(s) 811, 931
PsrI GAACNNNNNNTAC 2 cut(s) 134, 166
PsyI GACNNNGTC 1 cut(s) 809
RsaI GTAC 1 cut(s) 143
RsaNI GTAC 1 cut(s) 142
RseI CAYNNNNRTG 2 cut(s) 573, 906
SacI GAGCTC 1 cut(s) 954
SapI GCTCTTC 1 cut(s) 185
SaqAI TTAA 5 cut(s) 77, 332, 405, 539, 573
SatI GCNGC 3 cut(s) 399, 722, 732
Sau3AI GATC 2 cut(s) 424, 1012
Sau96I GGNCC 2 cut(s) 811, 931
ScaI AGTACT 1 cut(s) 143
SchI GAGTC 2 cut(s) 293, 885
ScrFI CCNGG 4 cut(s) 178, 696, 809, 929
SduI GDGCHC 3 cut(s) 570, 945, 954
SetI ASST 8 cut(s) 8, 22, 362, 697, 810, 910, 954, 1036
SexAI ACCWGGT 2 cut(s) 694, 807
SfaNI GCATC 7 cut(s) 220, 279, 385, 514, 530, 760, 874
SfcI CTRYAG 1 cut(s) 366
SfoI GGCGCC 1 cut(s) 753
SinI GGWCC 1 cut(s) 811
SmiMI CAYNNNNRTG 2 cut(s) 573, 906
SpeI ACTAGT 1 cut(s) 595
Sse9I AATT 6 cut(s) 88, 305, 540, 744, 1008, 1021
SsiI CCGC 2 cut(s) 399, 722
SspDI GGCGCC 1 cut(s) 751
SspMI CTAG 2 cut(s) 50, 596
SstI GAGCTC 1 cut(s) 954
StyD4I CCNGG 4 cut(s) 176, 694, 807, 927
StyI CCWWGG 2 cut(s) 265, 955
TaaI ACNGT 3 cut(s) 367, 627, 891
TaiI ACGT 1 cut(s) 1036
TasI AATT 6 cut(s) 88, 305, 540, 744, 1008, 1021
TatI WGTACW 1 cut(s) 141
TauI GCSGC 2 cut(s) 401, 724
TfiI GAWTC 3 cut(s) 31, 278, 796
Tru1I TTAA 5 cut(s) 77, 332, 405, 539, 573
Tru9I TTAA 5 cut(s) 77, 332, 405, 539, 573
TscAI CASTG 3 cut(s) 171, 328, 896
TseI GCWGC 1 cut(s) 731
TspDTI ATGAA 4 cut(s) 101, 114, 290, 543
TspRI CASTG 3 cut(s) 171, 328, 896
Tth111I GACNNNGTC 1 cut(s) 809
Van91I CCANNNNNTGG 2 cut(s) 166, 647
VpaK11BI GGWCC 1 cut(s) 811
VspI ATTAAT 1 cut(s) 539
XapI RAATTY 2 cut(s) 88, 1021
XspI CTAG 2 cut(s) 50, 596
ZrmI AGTACT 1 cut(s) 143
Zsp2I ATGCAT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.