RchiOBHm_Chr2g0173331

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001946
Physical Location & Seq
Reverse (-)
86354762 .. 86359051
4290 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54055

Sequence Viewer

Length: 1209 bp
ATGGGCAGTCCCACACGCGTTGGGAATATAAGAAAACCCAAAGAGAAAATGAGGTTTGTTGCGACGGCTTTTGTGGCGATTCTGTTTGGCTTCTTTCTAGGAGTGTCATTTCCAACGGTTTCGTTAACTAAGATGAATCTCCCATCCAGCCTTTTACCTTCCATTGATCTTTCATACATAGAGGACAAGTACTCGGGGTTCTCAACCCAAGCACTGGTGAATGCCTGGTCTTCTTTGAAGAGCAACAGAGATATCTCTGTAAAACACATCCCTAATGATGCAAAGATTTGGGTTCCAACAAATCCTCCAGGGGCTGAAAGACTACCCCCTGGCATCGTAGAATCTGAGTCAGATCTATATCTTCGTCGATTATGGGGTCTGCCCAGTGAGGACTTAACCATCAAGCCAAAGTATCTTGTAACCTTTACTGTAGGCCTTGCTCAGAAACAAAATATAAATGCAGCAGTTAAAAAGTTCTCAGAGAATTTCACAATTGTTTTATTTCACTATGATGGTCGGACAAGTGAATGGGATGAGTTTGAGTGGTCAAAGCGGGCCATCCATGTGAGCAGTCGGAAGCAAACTAAATGGTGGTATGCCAAGCGTTTTTTGCATCCTGACATTGTGGCATCCTATGAATACATATTTATTTGGGATGAGGATCTCGGTGTGGAGCACTTTAACGCAGAGGAATACATAAAACTAGTAAGGAAACATGGGTTGGAAATATCACAGCCTGGTTTAGAACCAAATAATGGGCTAACATGGCAGATGACAAAGCGGAGAGGTCATAGTGAAGTTCACATGCAGACAGAGGAGAAACCTGGTTGGTGTAATGATCCGCATTTGCCGCCCTGTGCAGCGTTTGTAGAAATTATGGCGCCTGTATTTTCTCAGGATGCATGGCGTTGTGTTTGGCATATGATTCAGAATGACCTGGTCCATGGTTGGGGTCTGGATTTTGCTCTTAGACGCTGTGTAGAGCCTGCTCATGAGAAAATAGGAGTTGTAGATGCACAGTGGATTGTCCATCAAGGTGTTCCTTCACTTGGAAACCAGGGGCAAGCAGGGAGTGGGAGAGCGCCATGGGAAGGGGTGAGGGAGAGGTGTAGAAGAGAATGGACTATGTTTCAAGCACGAATGGTTGGTGCAGAGAGAGCATATTTTGAAGAAATGGGAATTGATCCCCCAAATTCAACAGCACGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

402

Amino Acids

46.01

Weight (kDa)

7.72

Isoelectric Point (pI)

42.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 100 - 386 1.4e-140 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 880
AccB7I CCANNNNNTGG 2 cut(s) 214, 755
AccII CGCG 1 cut(s) 18
AciI CCGC 4 cut(s) 553, 781, 842, 851
AclWI GGATC 3 cut(s) 669, 833, 1178
AcsI RAATTY 2 cut(s) 484, 1192
AcyI GRCGYC 1 cut(s) 881
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 5 cut(s) 214, 755, 949, 1049, 1091
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 4 cut(s) 238, 1133, 1169, 1197
AhlI ACTAGT 1 cut(s) 703
AjnI CCWGG 7 cut(s) 224, 307, 328, 736, 823, 936, 1056
AjuI GAANNNNNNNTTGG 2 cut(s) 704, 736
Alw21I GWGCWC 1 cut(s) 678
AlwI GGATC 3 cut(s) 669, 833, 1178
AlwNI CAGNNNCTG 1 cut(s) 314
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 2 cut(s) 433, 555
ApeKI GCWGC 2 cut(s) 461, 860
ApoI RAATTY 2 cut(s) 484, 1192
AspLEI GCGC 2 cut(s) 883, 1084
AspS9I GGNCC 2 cut(s) 555, 940
AsuHPI GGTGA 2 cut(s) 229, 1108
AvaI CYCGRG 1 cut(s) 193
AvaII GGWCC 1 cut(s) 940
BanI GGYRCC 1 cut(s) 880
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 678
BbvI GCAGC 2 cut(s) 473, 872
BccI CCATC 5 cut(s) 151, 407, 506, 566, 1038
BceAI ACGGC 1 cut(s) 81
BciT130I CCWGG 7 cut(s) 226, 309, 330, 738, 825, 938, 1058
BcuI ACTAGT 1 cut(s) 703
BfaI CTAG 2 cut(s) 98, 704
BfmI CTRYAG 1 cut(s) 429
BfoI RGCGCY 2 cut(s) 884, 1085
BglII AGATCT 1 cut(s) 352
BisI GCNGC 3 cut(s) 462, 851, 861
BlsI GCNGC 3 cut(s) 463, 852, 862
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 7 cut(s) 226, 309, 330, 738, 825, 938, 1058
Bme18I GGWCC 1 cut(s) 940
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 2 cut(s) 555, 940
BmiI GGNNCC 2 cut(s) 294, 882
BmrFI CCNGG 7 cut(s) 226, 309, 330, 738, 825, 938, 1058
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 6 cut(s) 268, 342, 622, 638, 889, 1003
BmuI ACTGGG 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 291
BsaBI GATNNNNATC 2 cut(s) 357, 660
BsaHI GRCGYC 1 cut(s) 881
BsaJI CCNNGG 5 cut(s) 308, 328, 943, 1057, 1085
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 5 cut(s) 214, 755, 949, 1049, 1091
Bse1I ACTGG 2 cut(s) 219, 384
Bse8I GATNNNNATC 2 cut(s) 357, 660
BseBI CCWGG 7 cut(s) 226, 309, 330, 738, 825, 938, 1058
BseDI CCNNGG 5 cut(s) 308, 328, 943, 1057, 1085
BseGI GGATG 8 cut(s) 143, 267, 538, 558, 613, 629, 661, 904
BseJI GATNNNNATC 2 cut(s) 357, 660
BseLI CCNNNNNNNGG 5 cut(s) 214, 755, 949, 1049, 1091
BseMII CTCAG 4 cut(s) 336, 455, 492, 908
BseNI ACTGG 2 cut(s) 219, 384
BseRI GAGGAG 1 cut(s) 830
BseXI GCAGC 2 cut(s) 473, 872
BsgI GTGCAG 2 cut(s) 879, 1170
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 2 cut(s) 435, 557
BshNI GGYRCC 1 cut(s) 880
BsiHKAI GWGCWC 1 cut(s) 678
BsiHKCI CYCGRG 1 cut(s) 193
BslI CCNNNNNNNGG 5 cut(s) 214, 755, 949, 1049, 1091
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 2 cut(s) 435, 557
BsoBI CYCGRG 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 678
Bsp143I GATC 5 cut(s) 166, 352, 661, 838, 1183
Bsp19I CCATGG 2 cut(s) 943, 1085
BspACI CCGC 4 cut(s) 553, 781, 842, 851
BspANI GGCC 2 cut(s) 435, 557
BspCNI CTCAG 4 cut(s) 337, 454, 491, 907
BspFNI CGCG 1 cut(s) 18
BspHI TCATGA 1 cut(s) 991
BspLI GGNNCC 2 cut(s) 294, 882
BspPI GGATC 3 cut(s) 669, 833, 1178
BspQI GCTCTTC 1 cut(s) 233
BspT107I GGYRCC 1 cut(s) 880
BsrI ACTGG 2 cut(s) 219, 384
BssECI CCNNGG 5 cut(s) 308, 328, 943, 1057, 1085
BssMI GATC 5 cut(s) 166, 352, 661, 838, 1183
BssNI GRCGYC 1 cut(s) 881
BssT1I CCWWGG 2 cut(s) 943, 1085
Bst2UI CCWGG 7 cut(s) 226, 309, 330, 738, 825, 938, 1058
Bst4CI ACNGT 3 cut(s) 118, 430, 1020
Bst6I CTCTTC 2 cut(s) 233, 1108
BstACI GRCGYC 1 cut(s) 881
BstC8I GCNNGC 3 cut(s) 555, 987, 1065
BstDEI CTNAG 6 cut(s) 129, 345, 441, 478, 894, 968
BstDSI CCRYGG 2 cut(s) 943, 1085
BstF5I GGATG 8 cut(s) 143, 267, 538, 558, 613, 629, 661, 904
BstFNI CGCG 1 cut(s) 18
BstH2I RGCGCY 2 cut(s) 884, 1085
BstHHI GCGC 2 cut(s) 883, 1084
BstKTI GATC 5 cut(s) 169, 355, 664, 841, 1186
BstMBI GATC 5 cut(s) 166, 352, 661, 838, 1183
BstMWI GCNNNNNNNGC 5 cut(s) 74, 610, 766, 850, 1157
BstNI CCWGG 7 cut(s) 226, 309, 330, 738, 825, 938, 1058
BstNSI RCATGY 1 cut(s) 808
BstSCI CCNGG 7 cut(s) 224, 307, 328, 736, 823, 936, 1056
BstSFI CTRYAG 1 cut(s) 429
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 473, 872
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 2 cut(s) 352, 661
BstYI RGATCY 2 cut(s) 352, 661
BsuRI GGCC 2 cut(s) 435, 557
BtgI CCRYGG 2 cut(s) 943, 1085
BtsCI GGATG 8 cut(s) 143, 267, 538, 558, 613, 629, 661, 904
BtsIMutI CAGTG 3 cut(s) 212, 391, 1025
Cac8I GCNNGC 3 cut(s) 555, 987, 1065
CaiI CAGNNNCTG 1 cut(s) 314
CciI TCATGA 1 cut(s) 991
CfoI GCGC 2 cut(s) 883, 1084
Cfr13I GGNCC 2 cut(s) 555, 940
CseI GACGC 1 cut(s) 981
CsiI ACCWGGT 2 cut(s) 823, 936
Csp6I GTAC 1 cut(s) 190
CspCI CAANNNNNGTGG 1 cut(s) 36
CviAII CATG 8 cut(s) 563, 716, 765, 805, 903, 944, 992, 1086
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 6 cut(s) 129, 345, 441, 478, 894, 968
DinI GGCGCC 1 cut(s) 882
DpnI GATC 5 cut(s) 168, 354, 663, 840, 1185
DpnII GATC 5 cut(s) 166, 352, 661, 838, 1183
Eam1104I CTCTTC 2 cut(s) 233, 1108
EarI CTCTTC 2 cut(s) 233, 1108
Eco130I CCWWGG 2 cut(s) 943, 1085
Eco147I AGGCCT 1 cut(s) 435
Eco32I GATATC 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 940
Eco88I CYCGRG 1 cut(s) 193
EcoRII CCWGG 7 cut(s) 224, 307, 328, 736, 823, 936, 1056
EcoRV GATATC 1 cut(s) 253
EcoT14I CCWWGG 2 cut(s) 943, 1085
EcoT22I ATGCAT 1 cut(s) 904
EgeI GGCGCC 1 cut(s) 882
EheI GGCGCC 1 cut(s) 882
ErhI CCWWGG 2 cut(s) 943, 1085
FaeI CATG 8 cut(s) 566, 719, 768, 808, 906, 947, 995, 1089
FatI CATG 8 cut(s) 562, 715, 764, 804, 902, 943, 991, 1085
FauI CCCGC 1 cut(s) 546
FauNDI CATATG 1 cut(s) 921
Fnu4HI GCNGC 3 cut(s) 462, 851, 861
FokI GGATG 8 cut(s) 130, 254, 545, 545, 600, 616, 668, 911
Fsp4HI GCNGC 3 cut(s) 462, 851, 861
FspBI CTAG 2 cut(s) 98, 704
GlaI GCGC 2 cut(s) 882, 1083
GluI GCNGC 3 cut(s) 462, 851, 861
GsuI CTGGAG 1 cut(s) 291
HaeII RGCGCY 2 cut(s) 884, 1085
HaeIII GGCC 2 cut(s) 435, 557
HgaI GACGC 1 cut(s) 981
HhaI GCGC 2 cut(s) 883, 1084
Hin1I GRCGYC 1 cut(s) 881
Hin1II CATG 8 cut(s) 566, 719, 768, 808, 906, 947, 995, 1089
Hin6I GCGC 2 cut(s) 881, 1082
HinP1I GCGC 2 cut(s) 881, 1082
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 5 cut(s) 79, 136, 341, 347, 925
HpaI GTTAAC 1 cut(s) 126
HphI GGTGA 2 cut(s) 229, 1108
Hpy166II GTNNAC 2 cut(s) 126, 802
Hpy188I TCNGA 7 cut(s) 346, 352, 444, 481, 519, 576, 930
Hpy188III TCNNGA 4 cut(s) 617, 896, 956, 992
Hpy8I GTNNAC 2 cut(s) 126, 802
Hpy99I CGWCG 2 cut(s) 67, 369
HpyAV CCTTC 3 cut(s) 168, 1053, 1085
HpyCH4III ACNGT 3 cut(s) 118, 430, 1020
HpyCH4IV ACGT 1 cut(s) 1204
HpyCH4V TGCA 8 cut(s) 281, 461, 613, 808, 860, 902, 1016, 1151
HpyF10VI GCNNNNNNNGC 5 cut(s) 74, 610, 766, 850, 1157
HpyF3I CTNAG 6 cut(s) 129, 345, 441, 478, 894, 968
HpySE526I ACGT 1 cut(s) 1204
Hsp92I GRCGYC 1 cut(s) 881
Hsp92II CATG 8 cut(s) 566, 719, 768, 808, 906, 947, 995, 1089
HspAI GCGC 2 cut(s) 881, 1082
KasI GGCGCC 1 cut(s) 880
KspAI GTTAAC 1 cut(s) 126
Kzo9I GATC 5 cut(s) 166, 352, 661, 838, 1183
LguI GCTCTTC 1 cut(s) 233
LmnI GCTCC 1 cut(s) 673
Lsp1109I GCAGC 2 cut(s) 473, 872
LweI GCATC 6 cut(s) 268, 342, 622, 638, 889, 1003
MabI ACCWGGT 2 cut(s) 823, 936
MaeI CTAG 2 cut(s) 98, 704
MaeII ACGT 1 cut(s) 1204
MaeIII GTNAC 1 cut(s) 418
MalI GATC 5 cut(s) 168, 354, 663, 840, 1185
MboI GATC 5 cut(s) 166, 352, 661, 838, 1183
MboII GAAGA 5 cut(s) 222, 250, 353, 1125, 1181
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 2 cut(s) 352, 661
MhlI GDGCHC 1 cut(s) 678
MluCI AATT 5 cut(s) 484, 492, 873, 1179, 1192
MluI ACGCGT 1 cut(s) 16
Mly113I GGCGCC 1 cut(s) 881
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 5 cut(s) 137, 320, 497, 554, 702
Mph1103I ATGCAT 1 cut(s) 904
MseI TTAA 4 cut(s) 125, 395, 468, 681
MslI CAYNNNNRTG 3 cut(s) 510, 563, 1035
MspR9I CCNGG 7 cut(s) 226, 309, 330, 738, 825, 938, 1058
MunI CAATTG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 7 cut(s) 226, 309, 330, 738, 825, 938, 1058
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 5 cut(s) 74, 610, 766, 850, 1157
NarI GGCGCC 1 cut(s) 881
NcoI CCATGG 2 cut(s) 943, 1085
NdeI CATATG 1 cut(s) 921
NdeII GATC 5 cut(s) 166, 352, 661, 838, 1183
NlaIII CATG 8 cut(s) 566, 719, 768, 808, 906, 947, 995, 1089
NlaIV GGNNCC 2 cut(s) 294, 882
NsiI ATGCAT 1 cut(s) 904
NspI RCATGY 1 cut(s) 808
PagI TCATGA 1 cut(s) 991
PceI AGGCCT 1 cut(s) 435
PciSI GCTCTTC 1 cut(s) 233
PctI GAATGC 1 cut(s) 226
PfeI GAWTC 4 cut(s) 79, 136, 341, 925
PflFI GACNNNGTC 1 cut(s) 938
PflMI CCANNNNNTGG 2 cut(s) 214, 755
PkrI GCNGC 3 cut(s) 463, 852, 862
PleI GAGTC 1 cut(s) 355
PluTI GGCGCC 1 cut(s) 884
PpsI GAGTC 1 cut(s) 355
Psp6I CCWGG 7 cut(s) 224, 307, 328, 736, 823, 936, 1056
PspGI CCWGG 7 cut(s) 224, 307, 328, 736, 823, 936, 1056
PspN4I GGNNCC 2 cut(s) 294, 882
PspPI GGNCC 2 cut(s) 555, 940
PsrI GAACNNNNNNTAC 2 cut(s) 182, 214
PstNI CAGNNNCTG 1 cut(s) 314
PsuI RGATCY 2 cut(s) 352, 661
PsyI GACNNNGTC 1 cut(s) 938
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 3 cut(s) 510, 563, 1035
SapI GCTCTTC 1 cut(s) 233
SaqAI TTAA 4 cut(s) 125, 395, 468, 681
SatI GCNGC 3 cut(s) 462, 851, 861
Sau3AI GATC 5 cut(s) 166, 352, 661, 838, 1183
Sau96I GGNCC 2 cut(s) 555, 940
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 7 cut(s) 226, 309, 330, 738, 825, 938, 1058
SduI GDGCHC 1 cut(s) 678
SetI ASST 9 cut(s) 56, 160, 425, 790, 826, 939, 1039, 1109, 1207
SexAI ACCWGGT 2 cut(s) 823, 936
SfaNI GCATC 6 cut(s) 268, 342, 622, 638, 889, 1003
SfcI CTRYAG 1 cut(s) 429
SfoI GGCGCC 1 cut(s) 882
SinI GGWCC 1 cut(s) 940
SmiMI CAYNNNNRTG 3 cut(s) 510, 563, 1035
SpeI ACTAGT 1 cut(s) 703
Sse9I AATT 5 cut(s) 484, 492, 873, 1179, 1192
SseBI AGGCCT 1 cut(s) 435
SsiI CCGC 4 cut(s) 553, 781, 842, 851
SspDI GGCGCC 1 cut(s) 880
SspMI CTAG 2 cut(s) 98, 704
StuI AGGCCT 1 cut(s) 435
StyD4I CCNGG 7 cut(s) 224, 307, 328, 736, 823, 936, 1056
StyI CCWWGG 2 cut(s) 943, 1085
TaaI ACNGT 3 cut(s) 118, 430, 1020
TaiI ACGT 1 cut(s) 1207
TaqI TCGA 1 cut(s) 367
TasI AATT 5 cut(s) 484, 492, 873, 1179, 1192
TatI WGTACW 1 cut(s) 189
TauI GCSGC 1 cut(s) 853
TfiI GAWTC 4 cut(s) 79, 136, 341, 925
Tru1I TTAA 4 cut(s) 125, 395, 468, 681
Tru9I TTAA 4 cut(s) 125, 395, 468, 681
TscAI CASTG 3 cut(s) 219, 391, 1025
TseI GCWGC 2 cut(s) 461, 860
TspDTI ATGAA 3 cut(s) 149, 162, 651
TspRI CASTG 3 cut(s) 219, 391, 1025
Tth111I GACNNNGTC 1 cut(s) 938
Van91I CCANNNNNTGG 2 cut(s) 214, 755
VpaK11BI GGWCC 1 cut(s) 940
XapI RAATTY 2 cut(s) 484, 1192
XceI RCATGY 1 cut(s) 808
XspI CTAG 2 cut(s) 98, 704
ZrmI AGTACT 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.