Rh2DG672000

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0001946
Physical Location & Seq
Reverse (-)
89425868 .. 89430326
4459 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG672000.1

Sequence Viewer

Length: 903 bp
ATGGGCAGTCCCACACGCGTTGGGAATATAAGAAAACCCAAAGAGAAAATGAGGTTTGTTGCGACGGCTTTTGTGGCGATTCTGTTTGGCTTCTTTCTAGGAGTGTCATTTCCAACGGTTTCGTTAACTAAGATGAATCTCCCATCCAGCCTTTTACCTTCCATTGATCTTTCATACATAGAGGACAAGTACTCGGGGTTCTCAACCCAAGCACTGGTGAATGCCTGGTCTTCTTTGAAGAGTAACAGAGATATCTCTGTAAAATACATCCCTACTGATGCAAAGATTTGGGTTCCAACAAATCCTCCGGGGGCTGAAAGACTACCCCCTGGCATCGTAGAATCTGAGTCAGATCTATATCTTCGTCGATTATGGGGTCTGCCCAGTGAGGACTTAACCATCAAGCCAAAGTATCTTGTAACCTTTACTGTAGGCCTTGCTCAGAAACAAAATATAAATGCAGCAGTTAAAAAGTTCTCAGAGAATTTCACAGTTGTTTTATTTCACTATGATGGTCGGACAAGTGAATGGGATGAGTTTGAGTGGTCAAAGCGGGCCATCCATGTGAGCATTCGGAAGCAAACTAAATGGTGGTATGCCAAGCGTTTTTTGCATCCTGACATTGTGGCATCCTATGAATACATATTTATTTGGGATGAGGATCTCGGTGTGGAGCACTTTAACGCAGAGGAATACATAAAACTAGTAAGGAAACATGGGTTGGAAATATCACAGCCTGGTTTAGAACCAAATAATGGGCTAACATGGCAGATGACAAAGCGGAGAGGTCATAGTGAAGTTCACATGCAGACAGAGGAGAAACCTGGTTGGTGTAATGATCCGCATTTGCCACCCTGTGCAGCGTATGTAACTATATCTTATCCTTCACCCTCTGGGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

300

Amino Acids

34.32

Weight (kDa)

8.84

Isoelectric Point (pI)

45.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 100 - 295 1.4e-92 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 214, 755
AccII CGCG 1 cut(s) 18
AciI CCGC 3 cut(s) 553, 781, 842
AclWI GGATC 2 cut(s) 669, 833
AcsI RAATTY 1 cut(s) 484
AdeI CACNNNGTG 1 cut(s) 857
AfaI GTAC 1 cut(s) 191
AfiI CCNNNNNNNGG 2 cut(s) 214, 755
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 1 cut(s) 238
AhlI ACTAGT 1 cut(s) 703
AjnI CCWGG 4 cut(s) 224, 328, 736, 823
AjuI GAANNNNNNNTTGG 2 cut(s) 704, 736
Alw21I GWGCWC 1 cut(s) 678
AlwI GGATC 2 cut(s) 669, 833
Ama87I CYCGRG 1 cut(s) 193
AoxI GGCC 2 cut(s) 433, 555
ApeKI GCWGC 2 cut(s) 461, 860
ApoI RAATTY 1 cut(s) 484
AspS9I GGNCC 1 cut(s) 555
AsuC2I CCSGG 1 cut(s) 309
AsuHPI GGTGA 2 cut(s) 229, 879
AvaI CYCGRG 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 678
BbvI GCAGC 2 cut(s) 473, 872
BccI CCATC 4 cut(s) 151, 407, 506, 566
BceAI ACGGC 1 cut(s) 81
BciT130I CCWGG 4 cut(s) 226, 330, 738, 825
BcnI CCSGG 1 cut(s) 309
BcuI ACTAGT 1 cut(s) 703
BfaI CTAG 2 cut(s) 98, 704
BfmI CTRYAG 1 cut(s) 429
BglII AGATCT 1 cut(s) 352
BisI GCNGC 2 cut(s) 462, 861
BlsI GCNGC 2 cut(s) 463, 862
BmcAI AGTACT 1 cut(s) 191
Bme1390I CCNGG 5 cut(s) 226, 309, 330, 738, 825
BmeT110I CYCGRG 1 cut(s) 193
BmgT120I GGNCC 1 cut(s) 555
BmiI GGNNCC 1 cut(s) 294
BmrFI CCNGG 5 cut(s) 226, 309, 330, 738, 825
BmrI ACTGGG 1 cut(s) 378
BmsI GCATC 4 cut(s) 268, 342, 622, 638
BmuI ACTGGG 1 cut(s) 378
BpiI GAAGAC 1 cut(s) 222
BpuMI CCSGG 1 cut(s) 309
BsaBI GATNNNNATC 2 cut(s) 357, 660
BsaJI CCNNGG 2 cut(s) 308, 328
BsaXI ACNNNNNCTCC 2 cut(s) 289, 319
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 755
Bse1I ACTGG 2 cut(s) 219, 384
Bse8I GATNNNNATC 2 cut(s) 357, 660
BseBI CCWGG 4 cut(s) 226, 330, 738, 825
BseDI CCNNGG 2 cut(s) 308, 328
BseGI GGATG 7 cut(s) 143, 267, 538, 558, 613, 629, 661
BseJI GATNNNNATC 2 cut(s) 357, 660
BseLI CCNNNNNNNGG 2 cut(s) 214, 755
BseMII CTCAG 3 cut(s) 336, 455, 492
BseNI ACTGG 2 cut(s) 219, 384
BseRI GAGGAG 1 cut(s) 830
BseXI GCAGC 2 cut(s) 473, 872
BsgI GTGCAG 1 cut(s) 879
Bsh1236I CGCG 1 cut(s) 18
BshFI GGCC 2 cut(s) 435, 557
BsiHKAI GWGCWC 1 cut(s) 678
BsiHKCI CYCGRG 1 cut(s) 193
BsiSI CCGG 1 cut(s) 308
BslI CCNNNNNNNGG 2 cut(s) 214, 755
BsmI GAATGC 2 cut(s) 226, 570
BsnI GGCC 2 cut(s) 435, 557
BsoBI CYCGRG 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 678
Bsp143I GATC 4 cut(s) 166, 352, 661, 838
BspACI CCGC 3 cut(s) 553, 781, 842
BspANI GGCC 2 cut(s) 435, 557
BspCNI CTCAG 3 cut(s) 337, 454, 491
BspFNI CGCG 1 cut(s) 18
BspLI GGNNCC 1 cut(s) 294
BspPI GGATC 2 cut(s) 669, 833
BsrI ACTGG 2 cut(s) 219, 384
BssECI CCNNGG 2 cut(s) 308, 328
BssMI GATC 4 cut(s) 166, 352, 661, 838
Bst2UI CCWGG 4 cut(s) 226, 330, 738, 825
Bst4CI ACNGT 3 cut(s) 118, 430, 493
Bst6I CTCTTC 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 555
BstDEI CTNAG 4 cut(s) 129, 345, 441, 478
BstF5I GGATG 7 cut(s) 143, 267, 538, 558, 613, 629, 661
BstFNI CGCG 1 cut(s) 18
BstKTI GATC 4 cut(s) 169, 355, 664, 841
BstMBI GATC 4 cut(s) 166, 352, 661, 838
BstMWI GCNNNNNNNGC 3 cut(s) 74, 610, 766
BstNI CCWGG 4 cut(s) 226, 330, 738, 825
BstNSI RCATGY 1 cut(s) 808
BstSCI CCNGG 5 cut(s) 224, 307, 328, 736, 823
BstSFI CTRYAG 1 cut(s) 429
BstUI CGCG 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 473, 872
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 2 cut(s) 352, 661
BstYI RGATCY 2 cut(s) 352, 661
BsuRI GGCC 2 cut(s) 435, 557
BtsCI GGATG 7 cut(s) 143, 267, 538, 558, 613, 629, 661
BtsIMutI CAGTG 2 cut(s) 212, 391
Cac8I GCNNGC 1 cut(s) 555
Cfr13I GGNCC 1 cut(s) 555
CsiI ACCWGGT 1 cut(s) 823
Csp6I GTAC 1 cut(s) 190
CspCI CAANNNNNGTGG 1 cut(s) 36
CviAII CATG 4 cut(s) 563, 716, 765, 805
CviJI RGCY 9 cut(s) 68, 90, 150, 314, 406, 435, 557, 736, 760
CviKI_1 RGCY 9 cut(s) 68, 90, 150, 314, 406, 435, 557, 736, 760
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 4 cut(s) 129, 345, 441, 478
DpnI GATC 4 cut(s) 168, 354, 663, 840
DpnII GATC 4 cut(s) 166, 352, 661, 838
DraIII CACNNNGTG 1 cut(s) 857
Eam1104I CTCTTC 1 cut(s) 233
EarI CTCTTC 1 cut(s) 233
Eco147I AGGCCT 1 cut(s) 435
Eco32I GATATC 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 193
EcoRII CCWGG 4 cut(s) 224, 328, 736, 823
EcoRV GATATC 1 cut(s) 253
FaeI CATG 4 cut(s) 566, 719, 768, 808
FatI CATG 4 cut(s) 562, 715, 764, 804
FauI CCCGC 1 cut(s) 546
Fnu4HI GCNGC 2 cut(s) 462, 861
FokI GGATG 7 cut(s) 130, 254, 545, 545, 600, 616, 668
Fsp4HI GCNGC 2 cut(s) 462, 861
FspBI CTAG 2 cut(s) 98, 704
GluI GCNGC 2 cut(s) 462, 861
HaeIII GGCC 2 cut(s) 435, 557
HapII CCGG 1 cut(s) 308
Hin1II CATG 4 cut(s) 566, 719, 768, 808
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 4 cut(s) 79, 136, 341, 347
HpaI GTTAAC 1 cut(s) 126
HpaII CCGG 1 cut(s) 308
HphI GGTGA 2 cut(s) 229, 879
Hpy166II GTNNAC 2 cut(s) 126, 802
Hpy188I TCNGA 6 cut(s) 346, 352, 444, 481, 519, 576
Hpy188III TCNNGA 1 cut(s) 617
Hpy8I GTNNAC 2 cut(s) 126, 802
Hpy99I CGWCG 2 cut(s) 67, 369
HpyAV CCTTC 2 cut(s) 168, 894
HpyCH4III ACNGT 3 cut(s) 118, 430, 493
HpyCH4V TGCA 5 cut(s) 281, 461, 613, 808, 860
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 610, 766
HpyF3I CTNAG 4 cut(s) 129, 345, 441, 478
Hsp92II CATG 4 cut(s) 566, 719, 768, 808
KspAI GTTAAC 1 cut(s) 126
Kzo9I GATC 4 cut(s) 166, 352, 661, 838
LmnI GCTCC 1 cut(s) 673
Lsp1109I GCAGC 2 cut(s) 473, 872
LweI GCATC 4 cut(s) 268, 342, 622, 638
MabI ACCWGGT 1 cut(s) 823
MaeI CTAG 2 cut(s) 98, 704
MaeIII GTNAC 3 cut(s) 242, 418, 868
MalI GATC 4 cut(s) 168, 354, 663, 840
MboI GATC 4 cut(s) 166, 352, 661, 838
MboII GAAGA 3 cut(s) 222, 250, 353
MflI RGATCY 2 cut(s) 352, 661
MhlI GDGCHC 1 cut(s) 678
MluCI AATT 1 cut(s) 484
MluI ACGCGT 1 cut(s) 16
MlyI GAGTC 1 cut(s) 356
MmeI TCCRAC 4 cut(s) 137, 320, 497, 702
MnlI CCTC 9 cut(s) 45, 175, 315, 382, 652, 682, 779, 808, 901
MseI TTAA 4 cut(s) 125, 395, 468, 681
MslI CAYNNNNRTG 2 cut(s) 510, 563
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 5 cut(s) 226, 309, 330, 738, 825
Mva1269I GAATGC 2 cut(s) 226, 570
MvaI CCWGG 4 cut(s) 226, 330, 738, 825
MvnI CGCG 1 cut(s) 18
MwoI GCNNNNNNNGC 3 cut(s) 74, 610, 766
NciI CCSGG 1 cut(s) 309
NdeII GATC 4 cut(s) 166, 352, 661, 838
NlaIII CATG 4 cut(s) 566, 719, 768, 808
NlaIV GGNNCC 1 cut(s) 294
NspI RCATGY 1 cut(s) 808
PceI AGGCCT 1 cut(s) 435
PctI GAATGC 2 cut(s) 226, 570
PfeI GAWTC 3 cut(s) 79, 136, 341
PflMI CCANNNNNTGG 2 cut(s) 214, 755
PkrI GCNGC 2 cut(s) 463, 862
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
Psp6I CCWGG 4 cut(s) 224, 328, 736, 823
PspGI CCWGG 4 cut(s) 224, 328, 736, 823
PspN4I GGNNCC 1 cut(s) 294
PspPI GGNCC 1 cut(s) 555
PsrI GAACNNNNNNTAC 2 cut(s) 182, 214
PsuI RGATCY 2 cut(s) 352, 661
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
RseI CAYNNNNRTG 2 cut(s) 510, 563
SaqAI TTAA 4 cut(s) 125, 395, 468, 681
SatI GCNGC 2 cut(s) 462, 861
Sau3AI GATC 4 cut(s) 166, 352, 661, 838
Sau96I GGNCC 1 cut(s) 555
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 5 cut(s) 226, 309, 330, 738, 825
SduI GDGCHC 1 cut(s) 678
SetI ASST 5 cut(s) 56, 160, 425, 790, 826
SexAI ACCWGGT 1 cut(s) 823
SfaNI GCATC 4 cut(s) 268, 342, 622, 638
SfcI CTRYAG 1 cut(s) 429
SmiMI CAYNNNNRTG 2 cut(s) 510, 563
SpeI ACTAGT 1 cut(s) 703
Sse9I AATT 1 cut(s) 484
SseBI AGGCCT 1 cut(s) 435
SsiI CCGC 3 cut(s) 553, 781, 842
SspMI CTAG 2 cut(s) 98, 704
StuI AGGCCT 1 cut(s) 435
StyD4I CCNGG 5 cut(s) 224, 307, 328, 736, 823
TaaI ACNGT 3 cut(s) 118, 430, 493
TaqI TCGA 1 cut(s) 367
TasI AATT 1 cut(s) 484
TatI WGTACW 1 cut(s) 189
TfiI GAWTC 3 cut(s) 79, 136, 341
Tru1I TTAA 4 cut(s) 125, 395, 468, 681
Tru9I TTAA 4 cut(s) 125, 395, 468, 681
TscAI CASTG 2 cut(s) 219, 391
TseI GCWGC 2 cut(s) 461, 860
TspDTI ATGAA 3 cut(s) 149, 162, 651
TspRI CASTG 2 cut(s) 219, 391
Van91I CCANNNNNTGG 2 cut(s) 214, 755
XapI RAATTY 1 cut(s) 484
XceI RCATGY 1 cut(s) 808
XspI CTAG 2 cut(s) 98, 704
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.